XLOC_033057 (ppil1)


Basic Information

Item Value
gene id XLOC_033057
gene name ppil1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40647788 ~ 40659100 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064241
AGGAGATTGTGTTTCTCCTCATGCTCGAGACTCCATTACTCTTGCCCTTGTGTCTTCATCAGGCATCTTCAGACTGGTTTGAGAGGTATGGCCCTGCATGGAAGAAGCAACATTTAACAAGTGGAAGGAGCAGGAAGTGATCTACATCTGCTGAAGCGACACTGCGACACAATGGCATCTCTTGTCCATGACTTCACACTGAACGACTGCAACTGGAACTGAAAGGATATGGCTGGAATACCGCCGGATTCATGGCAACCTCCTACTGTTTCGCTGGACACAACGATGGGAACTATTGTGCTTGAGCTGTACTGGAATCATGCGCCAAAAACATGCAAGAATTTCGCAGAGCTGGGCAGAAGAGGATATTACAACAGCACAAAGTTTCATCGAATTATTAAAGACTTCATGGTTCAAGGAGGCGATCCAACAGGCACAGGTCGTGGTGGTGCATCAATATATGGCAAGCAGTTTGAGGATGAATTTCATCCAGAGTTGAAATTTACAGgtgCTGGAATTCTGGCTATGGCCAATGCAGGGCCGGATACAAACGGAAGCCAGTTCTTTCTCTCGTTGGCTCCCACACAATGGCTGGATGGGAAACACACTATATTTGGACGGGTCTGCCAGGGCATTGGTGTTCTTAATCGAATCGGCATGGTGGAAACCAACAGTCAGGACCGCCCTGTGGATGACATTAAAATCCTCAGAGTGAATCTGCCCAGCTAAGACGTTTGTGCTTGCACAATGTTTTACGCTTTATTTTTGTACAgccattttattacattaaacgTTCGGAATTCTCAGAAAAA
>TCONS_00064242
tacattataaacgAGTAAGCCAGACGGGACTGCTGCTTCCTCATCACGCTTTGCGGCACAATTCAAAATCAAAAGTAATATATTTAGACGTATATTTGTTAAATTGCAGATATGGCTGGAATACCGCCGGATTCATGGCAACCTCCTACTGTTTCGCTGGACACAACGATGGGAACTATTGTGCTTGAGCTGTACTGGAATCATGCGCCAAAAACATGCAAGAATTTCGCAGAGCTGGGCAGAAGAGGATATTACAACAGCACAAAGTTTCATCGAATTATTAAAGACTTCATGGTTCAAGGAGGCGATCCAACAGGCACAGGTCGTGGTGGTGCATCAATATATGGCAAGCAGTTTGAGGATGAATTTCATCCAGAGTTGAAATTTACAGgtgCTGGAATTCTGGCTATGGCCAATGCAGGGCCGGATACAAACGGAAGCCAGTTCTTTCTCTCGTTGGCTCCCACACAATGGCTGGATGGGAAACACACTATATTTGGACGGGTCTGCCAGGGCATTGGTGTTCTTAATCGAATCGGCATGGTGGAAACCAACAGTCAGGACCGCCCTGTGGATGACATTAAAATCCTCAGAGTGAATCTGCCCAGCTAAGACGTTTGTGCTTGCACAATGTTTTACGCTTTATTTTTGTACAgccattttattacattaaacgTTCGGAATTCTC
>TCONS_00065211
TATAAAAatactgggtttcacacaattccttcacgttatcccaacacaaatctattaatataacttaataattttcacaaatttgagtggattaagcataaaacaattacattgtcCCCCCCAAAATAACCCTAAGAATAGTGCTGGTTcaacccattttaaataagtagtttgaacaagcaactaaagtcatttttgagtgtatactGTAAAAATCGATAACTTAAACAAGTTAGTCAATCTGTTaccttaaaagtgacaagttgattttacttcaAAAATGTAAGTAATGATGCTGTAACTGTAGGgttctctatttttttttatattacacacatagttaatttacttaaaaGTGTTAAGGCaatagatttactcactttttaaagtaaagtcaactaaacagtttttacagtgtagcacagTTATATCCATTAGTTCCTGCATTAACTAAAATCCAGTGAAATGCATTTGTTGCAGCATTTATTATTCTCTTGTTATTAGTTAATAAATATACAACTGTTTACTGTTAGCTAagttacattaaataatatatatatatatatacactgtaaaaaatgatgggtttcagacaattccttcatgttgtctaaacacaaactgattaagtgaacttaattgtttttaaattttaagtggattgaacataaaacaaggaAGTTGTCCCTCCAAAAACtcaaaattgtgttgattcagctcattttaaacaagcagattgaacaagtagcaaaaacagtttttgattgtattattaaaatcaaacattGCATTGGTGTTTGAAATTAACATAACctaaaaataatacacatttttaaaatatttttttaagtatgtaaATCAATGGATGTATCAACTGATGCTAACAATGGAATCTTATTGGAAagtgttaatatatatttttattttaaatttgtatggTCAAATGAGTAAATAACGTTGAGTAAAAATTCAGTTAGGCCTTGTGTTTAATTTCAGCTATTTTCATATTGTGTGTTCATCACCAGGAGgagtttattttcagtgtaaacaaTGCACAGAGTATAATCAGAGGATCTCACAGAGGACATATTTACAACTTACCAAATGCGTTTCAAAACTCTTATCTAATGATGAACAATAGAGAGAGAAAAAGTAAGCCTGAACAGCAAGATAGAGGTTTATTCTTGCCTGTTGCCCTAAAGTCTGACCCAGAACAAGAGACAGCGCAAGTGAGGCGTGGTCTTTTTGAAGGTTAAAAGCTTGTGTACTCAGAAACCCAGAGGCACTTCAACACCAAACCAGCCAATCAAAGAGCACAAGACACACCTACGCATAGAAGCAGGACAGGGATTGGCCACAACGTAAAAATGACACCTGGGCAGGGCTCCAAGGCATCTTCAGACTGGTTTGAGAGGTATGGCCCTGCATGGAAGAAGCAACATTTAACAAGTGGAAGGAGCAGGAAGTGATCTACATCTGCTGAAGCGACACTGCGACACAATGGCATCTCTTGTCCATGACTTCACACTGAACGACTGCAACTGGAACTGAAAGGATGACACCTGAGATCTGTGTGACAAACACTAATTGAACTGCGCCTACACAGTTCGTCTTTCCTGTTCGCTGTGCTGGAGGAGGAAGTAATGCCAGTcggtaaaatattaaaatgactgGTAGACATGCGGCTCTCATGTTAGTGATTTGACACTTATATTACAGGTCTATGTGTTGTCTGATGGAATGTGCAAAgaaaattcacattttaaaagAGATTTGATTTACTTCAAAATGAAAAGTCATTATTTGCTCACTTTCAACTTGATCTCAACCCCATTTgagtttttttgcttttttccaATACATGTTTACGGTCTCATTTTAGTGTAAACTAGCCATTTAAATGATAAAGAAGAAACCGACTGTCAGCTCAtttgaacatttttgttttttatgaataaatatgtgccaccaataaaaatgtttgtttttggaaGATGGAAATAATGTTATTTTCTTCTCGTTAAATAATTTAGGGATGTGTTGGtcgttctgtcatcatttaatcacatACAAACCTACATGACACAAACAAACCCAGcaaccttttttttgttttcagaagaTGTCTGATAGATGCCTTATAGACGTCTAAACATGGTCGTCTtgcctaaaacaaggctaaatttgggctgtttgtcaaaatctaatagatgtccaaTAGATGTCTAAAAGACGTCTAAACAttgttgtcttggctaaaacaaagctaaacttgggctgttagTCTAAATCTAATAGATATCTAATAGATTTCTAATAGTCATCttaacatagtcgtcttggctaaaacaaagctaaatttgggctgttagtctaaatctaatagacgtctaatagatctCTTAACATAGTCGTCTTAGCTAAAACAATGCTACATTTAGTCTGTTAGtcaaaatctaatagatgtctaataaatgtctaatagacgtctaaacatagtcgtcttggctaaaacaaagctaaatttgggctgttggtcaaaatctaatagacgtctaatagatgtctaaacatagtcatcttagCTAAAACAATGCTACATTTAGTCTGTTAGtcaaaatctaatagatgtctaataaatgtctaatagacgtctaaacatagtcgtcttggctaaaacaaagctaaatttggg
>TCONS_00064244
TCTTCGCTTCAGGAGCTTTAGGAGATTGTGTTTCTCCTCATGCTCGAGACTCCATTACTCTTGCCCTTGTGTCTTCATCAGGCATCTTCAGACTGGTTTGAGAGGTATGGCCCTGCATGGAAGAAGCAACATTTAACAAGTGGAAGGAGCAGGAAGTGATCTACATCTGCTGAAGCGACACTGCGACACAATGGCATCTCTTGTCCATGACTTCACACTGAACGACTGCAACTGGAACTGAAAGGATGACACCTGAGATCTGTGTGACAAACACTAATTGAACTGCGCCTACACAGTTCGTCTTTCCTGTTCGCTGTGCTGGAGGAGGAAGTAATGCCAGTcggtaaaatattaaaatgactgGTAGACATGCGGCTCTCATGTTAGTGATTTGACACTTATATTACAGGTCTATGTGTTGTCTGATGGAATGTGCAAAgaaaattcacattttaaaagAGATTTGATTTACTTCAAAATGAAAAGTCATTATTTGCTCACTTTCAACTTGATCTCAACCCCATTTgagtttttttgcttttttccaATACATGTTTACGGTCTCATTTTAGTGTAAACTAGCCATTTAAATGATAAAGAAGAAACCGACTGTCAGCTCAtttgaacatttttgttttttatgaataaatatgtgccaccaataaaaatgtttgtttttggaaGATGG

Function

symbol description
ppil1 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein peptidyl-prolyl isomerization. Predicted to act upstream of or within protein folding. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human PPIL1 (peptidylprolyl isomerase like 1).

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0005634 nucleus cellular_component
GO:0016853 isomerase activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03041 Spliceosome
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-051009-1 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein peptidyl-prolyl isomerization. Predicted to act upstream of or within protein folding. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human PPIL1 (peptidylprolyl isomerase like 1).

Ensembl:

ensembl_id ENSDARG00000015422

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064241 False 812 mRNA 0.46 5 40647788 40657653
TCONS_00064242 False 688 mRNA 0.44 4 40647795 40651944
TCONS_00065211 False 2695 lncRNA 0.33 3 40654032 40659100
TCONS_00064244 True 688 processed_transcript 0.39 2 40654729 40657672

Neighbor

gene id symbol gene type direction distance location
XLOC_033056 NA coding downstream 18627 40625631 ~ 40629161 (-)
XLOC_033055 CU855953.1 coding downstream 22368 40625304 ~ 40625420 (-)
XLOC_033054 tspo coding downstream 64535 40578219 ~ 40583253 (-)
XLOC_033053 tomm6 coding downstream 74518 40572545 ~ 40573270 (-)
XLOC_033052 NA coding downstream 165590 40477430 ~ 40482198 (-)
XLOC_033061 NA coding upstream 854 40659954 ~ 40661324 (-)
XLOC_033062 CR450814.2 coding upstream 8247 40667347 ~ 40667463 (-)
XLOC_033063 si:ch211-157b11.14 coding upstream 30257 40689357 ~ 40697585 (-)
XLOC_033064 si:ch211-157b11.12 coding upstream 48062 40707162 ~ 40713204 (-)
XLOC_033065 kbtbd12 coding upstream 56537 40715637 ~ 40722480 (-)
XLOC_033046 NA non-coding downstream 238663 40383424 ~ 40409125 (-)
XLOC_033043 NA non-coding downstream 465268 40173228 ~ 40182520 (-)
XLOC_033070 CR450814.1 non-coding upstream 136798 40795898 ~ 40819766 (-)
XLOC_033074 NA non-coding upstream 197039 40856139 ~ 40864078 (-)
XLOC_033076 CR293534.1 non-coding upstream 287257 40946357 ~ 40946475 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G55461 NA non-coding CM030126.1 CM030126.1 29184921 ~ 29185184 (+)