G1407612


Basic Information

Item Value
gene id G1407612
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 72131627 ~ 72142024 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1607949
gctttgtaaagcctacataggctgtgaaagtgatgtgcacaagctggataaacacttttcatattggtctcgataatgaatgaAGTGAAGAAACAGTCGAGCTTTacacattcaaaaagtgccctttttccgtgacattggaatatctcaattgcatcctcctcacatcatctctaattctctaaaccgatTGGTGAGAAAatctgagtgccctcccctctgaccttctccaccaatgtgtacaataaaatgcttgaaaaggtgctgctgagatttgaactcaggatctcctgtttactagacaggcactttaaccaactaagccacagcacccatgaaAGAGATATATTTTGCAGAtttgaacacccacacctatttgaatcaaaccagtctcattaatttaaccaacATCTCTGTCttacaaaatcacatcacaaaagagatgtcttttactaatattggtcattcgaggacagtacatttttcacttgggtctcgagatgaataaactcaagaacctctgacatggattcttaaactatgatttgggacccaaagcagttattaacatgtcataggtgggtcgcgagatatgagtaaacattcagaatcatacactatttcttcataatgttggtcgttcgaggacactgcatttctcatttggctctcgagcttaaaaatggtaaaaacctctgaaacagcagatgaatcagttcgtgtaagtaattaaccggggaactttgtcaaaaccGGGGAACTTTATCAAaaggcagagttgctgagtttcttagctttcagagtaagtcttaacctgttcaaaaaacaacccttctgaaagtacattgcagtgccgtgacccggattcgaaccggggttgctgcggccacaacgcagagtactaaccactatacgatcacggctggCTAAAacagctggctttgtaaagcctacataggctgtgaaagtgatgtgcacaagctggataaacacttttcatattggtctcgataatgaataaagtgAAGAAACAGTCGAGCTTTacacattcaaaaagtgccctttttccgtgacattggaatatctcaattgcatcctcctcacgtcatctctaattctctaaaccgatTGGTGAGAAAatctgagtgccctcccctctgaccttctccaccaatgtgtacaataaaatgcttgaaagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1607949 True 1199 lncRNA 0.41 2 72131627 72142024

Neighbor

gene id symbol gene type direction distance location
trnat-agu-136 NA coding downstream 97005 72034549 ~ 72034622 (-)
trnah-gug-89 NA coding downstream 97353 72034203 ~ 72034274 (-)
trnat-cgu-54 NA coding downstream 97930 72033624 ~ 72033697 (-)
trnat-cgu-53 NA coding downstream 98855 72032699 ~ 72032772 (-)
trnah-gug-88 NA coding downstream 99203 72032353 ~ 72032424 (-)
LOC110492679 LOC106592833 coding upstream 60753 72202777 ~ 72207681 (-)
LOC118936314 nattl coding upstream 74290 72216314 ~ 72224253 (-)
LOC110492680 nattl coding upstream 136691 72278715 ~ 72285363 (-)
LOC110492684 NA coding upstream 182621 72324645 ~ 72326840 (-)
kcnc4 kcnc4 coding upstream 324622 72466646 ~ 72533135 (-)
G1407603 NA non-coding downstream 16237 72115113 ~ 72115390 (-)
G1407602 NA non-coding downstream 16883 72114463 ~ 72114744 (-)
G1407181 NA non-coding downstream 33667 72097613 ~ 72097960 (-)
G1407141 NA non-coding downstream 58674 72072744 ~ 72072953 (-)
G1407134 NA non-coding downstream 69106 72061276 ~ 72062521 (-)
G1407619 NA non-coding upstream 10509 72152533 ~ 72152782 (-)
G1407646 NA non-coding upstream 36109 72178133 ~ 72184010 (-)
G1407631 NA non-coding upstream 58491 72200515 ~ 72201470 (-)
G1407719 NA non-coding upstream 222120 72364144 ~ 72423225 (-)
G1407728 LOC106566388 non-coding upstream 229524 72371548 ~ 72381911 (-)
G1406752 NA other downstream 585782 71501118 ~ 71547366 (-)
G1406760 NA other downstream 588158 71539958 ~ 71543469 (-)
G1406514 NA other downstream 870810 71260322 ~ 71260817 (-)
G1406228 NA other downstream 1389448 70735647 ~ 70742179 (-)
LOC110492660 LOC106566428 other downstream 1910371 70216538 ~ 70221552 (-)
G1407628 NA other upstream 189782 72331806 ~ 72332715 (-)
G1407755 NA other upstream 293405 72435429 ~ 72437847 (-)
G1408615 NA other upstream 1088788 73230812 ~ 73232954 (-)
ppdpfb LOC106566296 other upstream 1627832 73769856 ~ 73777432 (-)
rps21 LOC106572905 other upstream 2030849 74172873 ~ 74182639 (-)

Expression


Co-expression Network