G1407728 (LOC106566388)


Basic Information

Item Value
gene id G1407728
gene name LOC106566388
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 72371548 ~ 72381911 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1608086
TCCGTTCTTCTGACACAGGTAGGGGAACCTCCAGACATTGCCCAGCCCCACAGAGAACCCGACCTGGGCCAGGATGTACTGCAGCTTGCTGTTCCAGGCCGGCCTCCCCTCCTCGTCCCCTGGAGAAGGTAGCAGGCCCTTGCCCATAGCCGGCTGGGCCCCGGGGCTGAGACCCATACTCATTCGGCTGCTCTTATAGTCCAGGGGCTCGGCCAGGGTCAGGAGGTCCGCCACTGACTCAGTGACGGGATCACTGTGAGGGAGTCCCAGGGTCACCTTGCTGTTTTTAGGCATGGTGGCGGTGGATGGTGAGGGTGGTCTAGGGTCAGGGGTACGATGTCAGAAGGGGTCAGAGATGGTCAAAAGGTAGATTCCACAGATAGAGgcgtaaatatgttttttttgtcttgaaCCTGGAAAGAGACCTTATTCAAAGTACAACAGCAAAAGTATTTGTTCTCAAAGCAATTCAAAATTCACACATTTAGTAAGGCAAATCTTCATTCAGGCACAACCTCCGAAACCAGCATCTCTCTGCGCGCAGAGATGCAAAATCACCGCGAGTTCCTTGGTGGAAAATGACATGCGGTGATGCGCGTAAAGTCTgacgcagacagagacagacaccaatgGTTCTCATTGGCAAGTTTAACGGACAATAACGGTCACTTGTACACACATTAACGACAATGTATTGTATTACTTCATCAATCCAGCACTGATATTGT

Function

NR:

description
sodium-dependent neutral amino acid transporter SLC6A17-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1608086 True 728 lncRNA 0.51 2 72371548 72381911

Neighbor

gene id symbol gene type direction distance location
LOC110492684 NA coding downstream 44708 72324645 ~ 72326840 (-)
LOC110492680 nattl coding downstream 86185 72278715 ~ 72285363 (-)
LOC118936314 nattl coding downstream 147295 72216314 ~ 72224253 (-)
LOC110492679 LOC106592833 coding downstream 163867 72202777 ~ 72207681 (-)
trnat-agu-136 NA coding downstream 336926 72034549 ~ 72034622 (-)
kcnc4 kcnc4 coding upstream 84735 72466646 ~ 72533135 (-)
hspa1b LOC106566386 coding upstream 154517 72536428 ~ 72540025 (-)
LOC110492690 LOC106566363 coding upstream 158524 72540435 ~ 72611247 (-)
LOC110492693 LOC105029198 coding upstream 238815 72620726 ~ 72641373 (-)
LOC110492692 LOC106566365 coding upstream 264106 72646017 ~ 72683627 (-)
G1407631 NA non-coding downstream 170078 72200515 ~ 72201470 (-)
G1407646 NA non-coding downstream 187538 72178133 ~ 72184010 (-)
G1407619 NA non-coding downstream 218766 72152533 ~ 72152782 (-)
G1407612 NA non-coding downstream 229524 72131627 ~ 72142024 (-)
G1407603 NA non-coding downstream 256158 72115113 ~ 72115390 (-)
G1407717 NA non-coding upstream 44887 72426798 ~ 72428838 (-)
G1407755 NA non-coding upstream 53518 72435429 ~ 72437847 (-)
G1407763 NA non-coding upstream 66220 72448131 ~ 72448971 (-)
G1407797 NA non-coding upstream 113059 72494970 ~ 72496083 (-)
G1407878 LOC106566367 non-coding upstream 323657 72705568 ~ 72707233 (-)
G1407628 NA other downstream 38833 72331806 ~ 72332715 (-)
G1406752 NA other downstream 825703 71501118 ~ 71547366 (-)
G1406760 NA other downstream 828079 71539958 ~ 71543469 (-)
G1406514 NA other downstream 1110731 71260322 ~ 71260817 (-)
G1406228 NA other downstream 1629369 70735647 ~ 70742179 (-)
G1408615 NA other upstream 848901 73230812 ~ 73232954 (-)
ppdpfb LOC106566296 other upstream 1387945 73769856 ~ 73777432 (-)
rps21 LOC106572905 other upstream 1790962 74172873 ~ 74182639 (-)
G1409044 NA other upstream 1813614 74195525 ~ 74195951 (-)

Expression


Co-expression Network