G1407717


Basic Information

Item Value
gene id G1407717
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 72426798 ~ 72428838 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1608073
TCATAAAAGTGCTAACTTTTATTTCATTTTCCCTCAATGTTTTGTCtaagacaaaaaaacattggTTGTTACTAGTATTGACGCTCCTGAATTCTCACACTATTTTATTCCATGTTCAAGTTGTAATTTGTGTGGAGAACAGAGAGTTGTCCCGTAGAGCAGCTGAAGAGACACAGAACACGTACAGATTGCTTAAAGAAGTCAGTGGTCCCAAGTCATTACGAGTGAGTCATATCTACTTGATTACAGTCAGTAAAGCTCACAGAACACTGAAGGTGCAAATCAAGAAACACACAACCAGTTTTAACAATGACATCTACATGAACACAGaatcacacactcactcacaccagacttacgcacacacgtacacgtaAGCACACcacatactcactcacacacaagagCACGCACGTTATTTGGATTGAAAACAACAATTTCACACTAATATTTTTTTACATCATAAATCTACAGACACAATAAGGGTACATTACGTACAAAAATCTGAAATATCTCAAAATATACAATTATTATATACAGCTCAAGTATTCTCCTGGTCACTTACACTATAGATAACTTCATTGTGAAGGGACAGAATGTACATCAATGCCTACAGAGTAAATATACAGAATAAAAGGGGTAGGTTCAGAATTCTACAACTTGATGTTCCatggttcctcaccctgaaagccgtctatgggccaggagaaactgtTTTCTTCAAACAGCTAATACAAACTGCAGCTAACTACAGCTACTACTAGCTATAACACTCAATGGAAGTGAATGGGGGCATAAGGACTCATTTCAGGGTGAGGAATCCTCTAACATCAAATGATACATTCCTGAGCTTCCCCTTGTAAGTACTGTAGTTTAGTTATTGATCAAATCACAGAATAAAGCATATTATCACTATAAAGTAAATGAATACACTATCACTGTCATTTTGAGAGAAATCGAGTTAGTCTACACATGTTTCATTTATTGTACTTGTACAAGGCAGTAATGAGACAGTGATGATAATACATACAGGCCATCTGGAGTTGACATTACATCACCTCAATAAGTGATTTAGGGAGCCAAATTGTCTAGTAAAAGCCCTGGCCCCTATTTCGATTCACATCGGTGCTATTCACACACTACTCGTTTAAGGGTGGAGATTGATGGTGTGCCTACAGATAGATGGTATTCTGACTTAATTCCCAAAGTAATTCTACCACCTTTATGTGCAAGGAAACCATTAATAAAAGGTGAGGGAAAGGTAtctcatttatttgtatttttttcagaTTGAAATAACACCAACAAGAGCTATCGACAAGAGTTAGGTATTTGAGTAATCCGTTTTGGATAAGGGAAATGTAAATATAAATGAGGCTTGTTTTAGAGCTATTGAACCATATGatcgctggagacaaatgtgaaaccagtcatatggcagGTCAAttggggcggcagggtagcctagtggttagagtgtagaggtggcagggtagcctagtggttacagcgtaggattagtaaccggaaggttgcaagatcgaatccccgagctgacaaggggaAAACAATCTGTAGTTCtacctctgaacaaggcagttaacctactcttcccaggtaggctgtcattgaaaataaggataggttcttagctgacttgccttgttaaataaagtttaTGCCGGTTTGGAATTGTACATCTTGCATGTATGTATGGGCACTCTCAAACATTATAGGCTACCTcaactttctctgtctctatcatgttAAACACCACTATTGACTGTCAGTAGGCCTAATAACCACACATATTACAATGCCAATTTAAACGGTTACTTCCcttcagttggtgtagcctacattatcattccatttaattactttttatttattttactaggcaagtcagttaagaacaaattcttattatcaatgacggcctaggaacagtgggttaactgcctgttcaggggcagaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1608073 True 1979 lncRNA 0.38 2 72426798 72428838

Neighbor

gene id symbol gene type direction distance location
LOC110492684 NA coding downstream 99958 72324645 ~ 72326840 (-)
LOC110492680 nattl coding downstream 141435 72278715 ~ 72285363 (-)
LOC118936314 nattl coding downstream 202545 72216314 ~ 72224253 (-)
LOC110492679 LOC106592833 coding downstream 219117 72202777 ~ 72207681 (-)
trnat-agu-136 NA coding downstream 392176 72034549 ~ 72034622 (-)
kcnc4 kcnc4 coding upstream 37808 72466646 ~ 72533135 (-)
hspa1b LOC106566386 coding upstream 107590 72536428 ~ 72540025 (-)
LOC110492690 LOC106566363 coding upstream 111597 72540435 ~ 72611247 (-)
LOC110492693 LOC105029198 coding upstream 191888 72620726 ~ 72641373 (-)
LOC110492692 LOC106566365 coding upstream 217179 72646017 ~ 72683627 (-)
G1407719 NA non-coding downstream 3573 72364144 ~ 72423225 (-)
G1407728 LOC106566388 non-coding downstream 44887 72371548 ~ 72381911 (-)
G1407631 NA non-coding downstream 225328 72200515 ~ 72201470 (-)
G1407646 NA non-coding downstream 242788 72178133 ~ 72184010 (-)
G1407619 NA non-coding downstream 274016 72152533 ~ 72152782 (-)
G1407755 NA non-coding upstream 6591 72435429 ~ 72437847 (-)
G1407763 NA non-coding upstream 19293 72448131 ~ 72448971 (-)
G1407797 NA non-coding upstream 66132 72494970 ~ 72496083 (-)
G1407878 LOC106566367 non-coding upstream 276730 72705568 ~ 72707233 (-)
G1407877 NA non-coding upstream 280507 72709345 ~ 72710717 (-)
G1407628 NA other downstream 94083 72331806 ~ 72332715 (-)
G1406752 NA other downstream 880953 71501118 ~ 71547366 (-)
G1406760 NA other downstream 883329 71539958 ~ 71543469 (-)
G1406514 NA other downstream 1165981 71260322 ~ 71260817 (-)
G1406228 NA other downstream 1684619 70735647 ~ 70742179 (-)
G1408615 NA other upstream 801974 73230812 ~ 73232954 (-)
ppdpfb LOC106566296 other upstream 1341018 73769856 ~ 73777432 (-)
rps21 LOC106572905 other upstream 1744035 74172873 ~ 74182639 (-)
G1409044 NA other upstream 1766687 74195525 ~ 74195951 (-)

Expression


Co-expression Network