XLOC_033067 (arpc4)


Basic Information

Item Value
gene id XLOC_033067
gene name arpc4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40743367 ~ 40778294 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064256
atgACGGCGACTCTGCGTCCGTACCTGAATGCGGTGCGTGCTACACTGCAGGCAGCTCTCTGTCTGGAGAACTTCTCCTCACAGGTGGTGGAAAGACACAACAAACCTGAGGTTGAAGTCCGGAGCAGTAAAGAGCTGTTGCTTCAGCCTGTTGTGATCAGTAGGAATGATAAAGAAAAGGTCCTAATAGAAGGTTCCATCAACTCTGTGCGGGTCAGCATTGCTGTCAAACAGGCTGATGAGATCGAAAAGATCCTGTGTCACAAGTTTATGCGCTTCATGATGATGAGAGCCGAGAACTTCTTCATCCTTAGGAGAAAACCTGTGGAGGGATATGACATCAGTTTCCTCATTACCAACTTCCACACAGAACAAATGTACAAGCATAAGTTAGTGGACTTTGTCATCCATTTCATGGAGGAGATCGACAAGGAAATCAGTGAGATGAAACTGTCAGTCAACGCCAGGGCTCGCATAGTTGCAGAGGAGTTCCTCAAAAACTTC
>TCONS_00064259
AAGTTGGTATCTTCCTATGAGTGGCGTTACTTGCGGAAGTCGCCCGGTGTTTGTAGCACTTCCGTCTTCTGCTCCAGCGGGTACACAGAAATGGACGGCGACTCTGCGTCCGTACCTGAATGCGGTGCGTGCTACACTGCAGGCAGCTCTCTGTCTGGAGAACTTCTCCTCACAGGTGGTGGAAAGACACAACAAACCTGAGGTTGAAGTCCGGAGCAGTAAAGAGCTGTTGCTTCAGCCTGTTGTGATCAGTAGGAATGATAAAGAAAAGGTCCTAATAGAAGGTTCCATCAACTCTGTGCGGGTCAGCATTGCTGTCAAACAGGCTGATGAGATCGAAAAGATCCTGTGTCACAAGTTTATGCGCTTCATGATGATGAGAGCCGAGAACTTCTTCATCCTTAGGAGAAAACCTGTGGAGGGATATGACATCAGTTTCCTCATTACCAACTTCCACACAGAACAAATGTACAAGCATAAGTTAGTGGACTTTGTCATCCATTTCATGGAGGAGATCGACAAGGAAATCAGTGAGATGAAACTGTCAGTCAACGCCAGGGCTCGCATAGTTGCAGAGGAGTTCCTCAAAAACTTTTAAGAAACGATCAGCACACCTTCTGCTGGCTGCAATACCCTATCACCGTAAAACACCTACGGAGAGCTTTGGGGCCATTGGGGAAGGAGCTAAGGTGTGTTTGATTCCTGGACCATCACCACAGCTGGATCCAGAAGGGTCACAGGAATGATTTCAGAGTATTGCATTATTGTAACTTGAGAGCAAAGTGACGGATTTAACAGACAGGCACGGTACTCCATTTGTTGTCTGTTCTActccttttttttttgccctgTTTTTTTAACTTTTGCTAATTgcctaatttttttaaagtatttgtttCTTCACATTCAGCAAATTTCTTTGCATTCCGTCTCTTTTCATCTTATCCCACATACCTTCGTTATTAtgcagtagtagcagtagtaaagTGCTTACAACTTTGCAATATTCTGAATATGCCTCAGCGTTCCCTtgtgctcatgaatattaatgagcaggTACTGTACATATTAAAAAGGATAGACTCATTTTACTTCTGCCTTTTTAACTAACTTTAAATCAGGGCGGGTCTATTGGATGAATGCGCATCTATGTTCACGAGCACAAAGGAAATGGTGTTCCAATAATTTAACAGATTATTTTGTCagtgttttttataaatatgtatactgTGTTCTGACGACCATTTTTTCATGTTGAGTTTTGATATAAAAATCCTCACGCTGGTGCACATGGATCTTACAAACCATATCATGATGATGATGCTAAATAAATCCCTTTATTGCTTATATTGTGTGGTGTACTGTGGGAATGAAAGCTTGTGGATCGGTTGATTTTTATGGTAAGGTTACCTGCAGTTTgcctacacttttttttttttgtattgatttcTTCTGATGCtcagacattttttaaagcaaGTGGTCAGACCAATACAAACTTAAATGGTAGGCAAATATCACCCCAGCTagcattttctgttttaaaagatgtctaatagacgtctaaacatggTCGTCTtgcctaaaacaaggctaaatttgggctgtcggTGAAAATCTAATAGGTGTCTAAGAAtaagccaaaactagactagtcatcaaataaacagaaatgaatgacttcacATATAAAGTGtctctatttgacgactagtctagttttaggcAAATTTATTCTTGTTTAAGCCAAGACGACCATTTTTAGACATCTATTGgacagattttcactgacagcccaagttagCCTTTGTTTTAgtcaagctgtctacgtttagatatCTATTAGGCGTCTATTAAACAAAACTGTTTGCTGGGAACTTTTTTCTTTCACATATGTAGAAACTGTAATGTTTTTCAcctattttaaaatgtagaaCAAAGTTTTCACAAATAATCTAGATCTATCATTTATTCCAGAGTTAAAGAGTCCAATCCTATTATACGGTTtacttttgacattttaaaatggttAGCGTTGCAGTTAAGTATTCCCTATTACCAATATATGTTTTAGCATAAGATAAAGCAATGGAGCTTATGTTTATACAACCTTTACttctttttacaataaaattagaTCAAAACGAA
>TCONS_00064260
TCCAGCGGGTACACAGAAATGACGGCGACTCTGCGTCCGTACCTGAATGCGGTGCGTGCTACACTGCAGGCAGCTCTCTGTCTGGAGAACTTCTCCTCACAGGTGGTGGAAAGACACAACAAACCTGAGGTTGAAGTCCGGAGCAGTAAAGAGCTGTTGCTTCAGCCTGTTGTGATCAGTAGGAATGATAAAGAAAAGGTCCTAATAGAAGGTTCCATCAACTCTGTGCGGGTCAGCATTGCTGTCAAACAGGCTGATGAGATCGAAAAGATCCTGTGTCACAAGTTTATGCGCTTCATGATGATGAGAGCCGAGAACTTCTTCATCCTTAGGAGAAAACCTGTGGAGGGATATGACATCAGTTTCCTCATTACCAACTTCCACACAGAACAAATGTACAAGCATAAGTTAGTGGACTTTGTCATCCATTTCATGGAGGAGATCGACAAGGAAATCAGTGAGATGAAACTGTCAGTCAACGCCAGGGCTCGCATAGTTGCAGAGGAGTTCCTCAAAAACTTTTAAGAAACGATCAGCACACCTTCTGCTGGCTGCAATACCCTATCACCGTAAAACACCTACGGAGAGCTTTGGGGCCATTGGGGAAGGAGCTAAGGTGTGTTTGATTCCTGGACCATCACCACAGCTGGATCCAGAAGGGTCACAGGAATGATTTCAGAGTATTGCATTATTGTAACTTGAGAGCAAAGTGACGGATTTAACAGACAGGCACGGTACTCCATTTGTTGTCTGTTCTActccttttttttttgccctgTTTTTTTAACTTTTGCTAATTgcctaatttttttaaagtatttgtttCTTCACATTCAGCAAATTTCTTTGCATTCCGTCTCTTTTCATCTTATCCCACATACCTTCGTTATTAtgcagtagtagcagtagtaaagTGCTTACAACTTTGCAATATTCTGAATATGCCTCAGCGTTCCCTtgtgctcatgaatattaatgagcaggTACTGTACATATTAAAAAGGATAGACTCATTTTACTTCTGCCTTTTTAACTAACTTTAAATCAGGGCGGGTCTATTGGATGAATGCGCATCTATGTTCACGAGCACAAAGGAAATGGTGTTCCAATAATTTAACAGATTATTTTGTCagtgttttttataaatatgtatactgTGTTCTGACGACCATTTTTTCATGTTGAGTTTTGATATAAAAATCCTCACGCTGGTGCACATGGATCTTACAAACCATATCATGATGATGATGCTAAATAAATCCCTTTATTGCT
>TCONS_00064261
GACGGCGACTCTGCGTCCGTACCTGAATGCGGTGCGTGCTACACTGCAGGCAGCTCTCTGTCTGGAGAACTTCTCCTCACAGGTGGTGGAAAGACACAACAAACCTGAGGTTGAAGTCCGGCTGATGAGATCGAAAAGATCCTGTGTCACAAGTTTATGCGCTTCATGATGATGAGAGCCGAGAACTTCTTCATCCTTAGGAGAAAACCTGTGGAGGGATATGACATCAGTTTCCTCATTACCAACTTCCACACAGAACAAATGTACAAGCATAAGTTAGTGGACTTTGTCATCCATTTCATGGAGGAGATCGACAAGGAAATCAGTGAGATGAAACTGTCAGTCAACGCCAGGGCTCGCATAGTTGCAGAGGAGTTCCTCAAAAACTTTTAAGAAACGATCAGCACACCTTCTGCTGGCTGCAATACCCTATCACCGTAAAACACCTACGGAGAGCTTTGGGGCCATTGGGGAAGGAGCTAAGGTGTGTTTGATTCCTGGACCATCACCACAGCTGGATCCAGAAGGGTCACAGGAATGATTTCAGAGTATTGCATTATTGTAACTTGAGAGCAAAGTGACGGATTTAACAGACAGGCACGGTACTCCATTTGTTGTCTGTTCTActccttttttttttgccctgTTTTTTTAACTTTTGCTAATTgcctaatttttttaaagtatttgtttCTTCACATTCAGCAAATTTCTTTGCATTCCGTCTCTTTTCATCTTATCCCACATACCTTCGTTATTAtgcagtagtagcagtagtaaagTGCTTACAACTTTGCAATATTCTGAATATG

Function

symbol description
arpc4 Predicted to enable actin binding activity. Predicted to act upstream of or within Arp2/3 complex-mediated actin nucleation and actin filament polymerization. Predicted to be located in actin cytoskeleton; cell projection; and cytoplasm. Predicted to be part of Arp2/3 protein complex. Orthologous to human ARPC4 (actin related protein 2/3 complex subunit 4).

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0030833 regulation of actin filament polymerization biological_process
GO:0030041 actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005885 Arp2/3 protein complex cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04138 Autophagy - yeast
ko04530 Tight junction
ko04810 Regulation of actin cytoskeleton
ko04666 Fc gamma R-mediated phagocytosis
ko05130 Pathogenic Escherichia coli infection
ko05132 Salmonella infection
ko05131 Shigellosis
ko05135 Yersinia infection
ko05100 Bacterial invasion of epithelial cells
ko04131 Membrane trafficking
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-010724-9 Predicted to enable actin binding activity. Predicted to act upstream of or within Arp2/3 complex-mediated actin nucleation and actin filament polymerization. Predicted to be located in actin cytoskeleton; cell projection; and cytoplasm. Predicted to be part of Arp2/3 protein complex. Orthologous to human ARPC4 (actin related protein 2/3 complex subunit 4).

Ensembl:

ensembl_id ENSDARG00000054063

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064256 False 504 mRNA 0.47 6 40743367 40778294
TCONS_00064259 False 2148 mRNA 0.39 6 40761626 40768726
TCONS_00064260 False 1272 mRNA 0.41 6 40762429 40768654
TCONS_00064261 True 812 processed_transcript 0.43 4 40762757 40767671

Neighbor

gene id symbol gene type direction distance location
XLOC_033065 kbtbd12 coding downstream 20887 40715637 ~ 40722480 (-)
XLOC_033064 si:ch211-157b11.12 coding downstream 30163 40707162 ~ 40713204 (-)
XLOC_033063 si:ch211-157b11.14 coding downstream 45782 40689357 ~ 40697585 (-)
XLOC_033062 CR450814.2 coding downstream 75904 40667347 ~ 40667463 (-)
XLOC_033061 NA coding downstream 82043 40659954 ~ 40661324 (-)
XLOC_033070 CR450814.1 coding upstream 17604 40795898 ~ 40819766 (-)
XLOC_033071 eefsec coding upstream 44293 40822587 ~ 40832245 (-)
XLOC_033072 mustn1a coding upstream 62862 40841156 ~ 40842768 (-)
XLOC_033073 rft1 coding upstream 65492 40843786 ~ 40854458 (-)
XLOC_033074 NA coding upstream 77845 40856139 ~ 40864078 (-)
XLOC_033060 dre-mir-200c non-coding downstream 87079 40656204 ~ 40656288 (-)
XLOC_033059 dre-mir-141 non-coding downstream 87282 40656003 ~ 40656085 (-)
XLOC_033058 dre-mir-429b non-coding downstream 90129 40653129 ~ 40653238 (-)
XLOC_033076 CR293534.1 non-coding upstream 168063 40946357 ~ 40946475 (-)
XLOC_033077 NA non-coding upstream 185392 40963686 ~ 40968341 (-)
XLOC_033085 NA non-coding upstream 673376 41451670 ~ 41452888 (-)

Expression


Co-expression Network