G1407485 (LOC106566365)


Basic Information

Item Value
gene id G1407485
gene name LOC106566365
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 72671271 ~ 72683597 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1607778
CTCCAACCCAGGCCAGTGACACGGACCCACTCAGGTCATTGAAGGAACGGTTTGGGTGTTGTTAGTCAACTTGGTGTCGAATCCCTGGAGACGGTCACAGTCTCCTTGATCCGCACTTCTTCTGCTCCTAATGTGGTCGGATGATTCAGAATCAAACGGATCTAAATCTGGTGATCTCTTTTCGATATTCAAACTGGGATCTTTCACAAATTCATACTGACCGCTGTTATATTGTCCTTCTTTAAAATCATAAGATGACGTCAAATGCTGGAATATAAAAAGAATAACACAGTGCGCCAGAACTCCCATATTCACTGTTGGCCAAAAACACGACTATTATTGTACgatatatttttgttattctaGTAATCCTGACTATAAATCGTGGGTCGCTCCGGTTCGAACACGGCCGCCGATGACATCAACACAAACAGTAGTCCTGACAGCGAGTGGTAACCTACTTCGGGCTTTGTATGCTCTGCATGGGTCATAGACTATTTGAGGCGGTGCGCTCCAGTCTCCAGAGCGCTTAGTTTTACGTCCCGATGCGCGGAAAAAATGTCGGAAGTCCCCAGCTAACAACAAATCAGACGCAATAATGTGCCGAGATACATTAGGTCCAATTGTCCACCGTGCAACTCCTTGTCCAAAAATTATACAATGTAACGGTGCATGAAATTGTGTCTATGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1607778 True 690 lncRNA 0.45 2 72671271 72683597

Neighbor

gene id symbol gene type direction distance location
ngrn ngrn coding upstream 25263 72641881 ~ 72646008 (+)
LOC110491175 LOC106566388 coding upstream 251911 72371494 ~ 72419360 (+)
LOC110492916 LOC106592833 coding upstream 337939 72236985 ~ 72333332 (+)
LOC110492683 nattl coding upstream 406516 72263336 ~ 72264755 (+)
LOC118939586 NA coding upstream 408064 72235921 ~ 72263207 (+)
sypl2b LOC106566367 coding downstream 18841 72702438 ~ 72709614 (+)
LOC118939587 NA coding downstream 22736 72706333 ~ 72707004 (+)
amigo1 LOC106566368 coding downstream 70486 72754083 ~ 72768074 (+)
LOC118939588 NA coding downstream 82945 72766542 ~ 72769227 (+)
LOC110492598 LOC106566362 coding downstream 130750 72808730 ~ 72818165 (+)
G1407472 NA non-coding upstream 13909 72657010 ~ 72657362 (+)
G1407430 NA non-coding upstream 51637 72618638 ~ 72619634 (+)
G1407433 NA non-coding upstream 128480 72540436 ~ 72542791 (+)
G1407371 NA non-coding upstream 162110 72441633 ~ 72509161 (+)
G1407367 NA non-coding upstream 234260 72435238 ~ 72437011 (+)
G1407493 NA non-coding downstream 5063 72688660 ~ 72693547 (+)
G1407500 NA non-coding downstream 28233 72711830 ~ 72712090 (+)
G1407501 NA non-coding downstream 28851 72712448 ~ 72712702 (+)
G1407502 NA non-coding downstream 33181 72716778 ~ 72716979 (+)
G1407503 NA non-coding downstream 57626 72741223 ~ 72741727 (+)
G1407199 LOC106566391 other upstream 391716 72216313 ~ 72279555 (+)
G1407190 NA other upstream 567430 72103386 ~ 72103841 (+)
G1406555 NA other upstream 1254844 71413557 ~ 71416427 (+)
G1406510 NA other upstream 1414294 71255979 ~ 71256977 (+)
G1407509 NA other downstream 82305 72765902 ~ 72769218 (+)
LOC110491159 LOC105013496 other downstream 141924 72824995 ~ 72894201 (+)
G1407566 NA other downstream 228386 72911983 ~ 72929719 (+)
G1408176 NA other downstream 742150 73425747 ~ 73426266 (+)

Expression


Co-expression Network