XLOC_033069 (h1-10)


Basic Information

Item Value
gene id XLOC_033069
gene name h1-10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40769517 ~ 40771813 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064262
TTTTATTTGACCACTTTTGCACTCCATCGGAAAGACTACCGTCTGGACTTTCCATATAAATAATCTGAAAGAGTAAAGTATGTCAAGATAATAAGAAAACAGTTCCAAAAGACGTGAAAGAAAACACAACTCCACAAGTGCCTCCGCTGACGATGTTGTTGTTCTCAATCACGTCCGCGTTCCGCCGTTAAATCTGTTGATACAAACTTCGTGATGATGCTCGCATATCTGACCTGATCTGATCTTGGGAAATACACTCTTATACGCATAAGCTTGATCATGCCTGCTGTCGTCGAAGAGTCAGCGCCCGCCCCAGCCCCTGCTCCAGCGGAGAAAAAAGCTAAACCTGCCGTGGCTGCTTCTCCAgctaaaaagaagaaaaagaagagcaAGGGCCCCGGGAAGTACAGCAAGCTTGTAACTGATGCTATCCGTACTCTGGGAGAGAAAAACGGCTCGTCGCTTTTCAAAATCTACAACGAAGCGAAGAAAGTGAGCTGGTTTGACCAGAAGAACGGACGCATGTATCTGCGCGCCTCCATCCGCGCGCTCGTGCTCAACGACACGCTCGTGCAGGTGAAGGGATTCGGAGCCAACGGGTCATTCAAGCTCAATAAGAAGAAACTTGAGAAAAAGCCAAAGAAAGCTGCGTCAAAAAAGGCGACCAAGAAGACGGAGAAGCCGACCTCCAAAAAAGCCGTGACCAAGAAAGTGAGTGCAAAGAAGAGCGCCAAAAAGAGCCCTGTTAAGAAGAAAACCCCGAAGAAGACGAGTGTGAAGAAGGCGACCGCCAAACCCAAGAAAACAGCTGCAAAAAAGCCAAAAGCTGCCGCAAAgaagaaaactaaatcaaaatagaCTTTCTGACGAAGAGGAGTTATATTTTTATAGCCTATTTAGTGTCTTAGCCAGACAAACCAGacgatttttatttttgatattctTGTTGATATTTGGGGACTGATGTATCGTCgatatacattttataaactgCATTGATGCTTTTCTGAAATGCATGTTAGTATTTGTTTTGTTGCACTGAACAGAATAGTTACTGGCTACAATCTAAGTGCAGCTGATAGTAGGCtatttaacttaacattaacaGGGTTTTTGCTTATTTCATTTACAAAACATTTCTGCAAATACAATATTACTGAAATACTAAATGTCTTATGTGTATTTGGATCCTTCTTTATGTATGTAAAACAGATATCTGGCCTGCTTATTTATCTCAGATTTATgattaaatgtaactttaatacCATGTTTTACCAGTTTTATATGATATAGTTTGATTTGGGATCTAATAGTTGTTGCAGAACTGCTTAACTATTTTGTCCTCCAAACTAATAACCTATATGGCAAAAACAATGTGAATTAATGATGAattaaagatttgtttttcaCACTGTTGACACCTGGAAATGTCAAGTATGTGATTTTTATATATCCAAATCTGGTGGAGTACAGAAATTAAGTACTAAAACACTttccaagtaaaataaagtacTGCACATCAGCTAAAGACAAGGCATGCTAATTTTTGGTGTTCAGCTCAACATGAATTTATAAATGTGAGTTTGcggaaaaataaaatactttcatgttttgttttttttaagaaaattattctgttcatcaagtaaacataatgtacatttaaaaatatatatttactaaaatttttAATGACTGCTTTGTTAGTGTAGTTTCAAATGagattattactccagtcattattgcttctattactattaccattaattataataatattaaaaaacaacaataatacttTATGTTAGAGTGAATTCTGGAGGATCATTTGACTGTAGTAAAGAAGCAGAaaattcctttttaaaatcactggaattaataattaaattaaattctaaactACATTTGAACTTTTATTctttagtgcaataacattttacaatttgtactgtatttttgattaaataaatgcagccttggtaagcaggataagcttatAACTAATAACTTTGAGGATACTGCAAAGTTtagaaaacaacacaaaatgtgAAATAATGATGAATTAAATGGTTATATACTGCTGACACTTGGAAAATGtcaaatatgtgattttttttaaatatccaaaTCTAATGGTGGAGTACAGAAATTAAGTTGTAAAACACTACccatgtataaataataataggaaGAACGTTACTGCACATTAGCTAAAGACATCTCCAATTTTTGGTGTCCAGCTCAATGTGaatttataaatgtgattttgtgaaaaaaataaaatacagattaaATAA

Function

symbol description
h1-10 Predicted to enable double-stranded DNA binding activity and nucleosomal DNA binding activity. Predicted to be involved in DNA packaging and regulation of nucleobase-containing compound metabolic process. Predicted to act upstream of or within nucleosome assembly. Predicted to be located in chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Is expressed in peripheral olfactory organ and proliferative region. Orthologous to human H1-10 (H1.10 linker histone).

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030261 chromosome condensation biological_process
GO:0016584 nucleosome positioning biological_process
GO:0031936 negative regulation of chromatin silencing biological_process
GO:0045910 negative regulation of DNA recombination biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0031492 nucleosomal DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1228 Predicted to enable double-stranded DNA binding activity and nucleosomal DNA binding activity. Predicted to be involved in DNA packaging and regulation of nucleobase-containing compound metabolic process. Predicted to act upstream of or within nucleosome assembly. Predicted to be located in chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Is expressed in peripheral olfactory organ and proliferative region. Orthologous to human H1-10 (H1.10 linker histone).

Ensembl:

ensembl_id ENSDARG00000054058

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064262 True 2297 mRNA 0.35 1 40769517 40771813

Neighbor

gene id symbol gene type direction distance location
XLOC_033068 myhb coding downstream 13379 40745437 ~ 40756138 (-)
XLOC_033066 p4htm coding downstream 24791 40730869 ~ 40744726 (-)
XLOC_033065 kbtbd12 coding downstream 47037 40715637 ~ 40722480 (-)
XLOC_033064 si:ch211-157b11.12 coding downstream 56313 40707162 ~ 40713204 (-)
XLOC_033063 si:ch211-157b11.14 coding downstream 71932 40689357 ~ 40697585 (-)
XLOC_033070 CR450814.1 coding upstream 24085 40795898 ~ 40819766 (-)
XLOC_033071 eefsec coding upstream 50774 40822587 ~ 40832245 (-)
XLOC_033072 mustn1a coding upstream 69343 40841156 ~ 40842768 (-)
XLOC_033073 rft1 coding upstream 71973 40843786 ~ 40854458 (-)
XLOC_033074 NA coding upstream 84326 40856139 ~ 40864078 (-)
XLOC_033062 CR450814.2 non-coding downstream 102054 40667347 ~ 40667463 (-)
XLOC_033061 NA non-coding downstream 108193 40659954 ~ 40661324 (-)
XLOC_033060 dre-mir-200c non-coding downstream 113229 40656204 ~ 40656288 (-)
XLOC_033059 dre-mir-141 non-coding downstream 113432 40656003 ~ 40656085 (-)
XLOC_033058 dre-mir-429b non-coding downstream 116279 40653129 ~ 40653238 (-)
XLOC_033076 CR293534.1 non-coding upstream 174544 40946357 ~ 40946475 (-)
XLOC_033077 NA non-coding upstream 191873 40963686 ~ 40968341 (-)
XLOC_033085 NA non-coding upstream 679857 41451670 ~ 41452888 (-)

Expression


Co-expression Network