G1408561


Basic Information

Item Value
gene id G1408561
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 73068362 ~ 73070422 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1609108
TGTTTCATAAATCCTTTATCTTTAAACATAGCCTGCTGCAGGTCATCAAATGGGATCAGGCGTGTTGACACAGCTTTAGCAATTTACAGGCCCACATACTCAATGATAATTTGACAAATATACAGCAGAATATGAACCTGAACAAGCAGTCACCCTCCAGGTCAGTCACTCCTCCAGGACAGTCACTCCTCCAGGACAGTCACTCCTCCAGGATAGTCACCCCTCCAGGACAGTCACTCCTCCAGGACAGTCACCCCTCCAGGACAGTCACCCCTCCAGGACAGTCCCCCCTCCAGGATAGTCACCCCTCCAGGACAGTCACCCCTCCAGGACAGTCCCCCCCCCAGGACAGTCACCCCTCCAGGACAGTCATTGGACCTTCTACAGTCATTTTATTACAGTCGATTTCCACAAAATGGACAGCACTTGTGACAATAATGTAAACACAATCATTAACATTATGGCCGAGTTCTGATCCGATCGCGCCTTTCACCTTTTAAAGGCAACGTTTCCACACTcacggagactgcattcacggtaaactctGCACATGTCACCTCGGAAGTGACCTTTAAAATGTCAAACGCGCTACACCGCTGATCTACAGCTGATCAGATTGCATCCcggtctgtttctcaaacaaaATGACACAAAACAGAATACTTATTGTGATGCTCATCTAACGATTTTCATGATCTGCACAATTTTTTTGTGTCCCAACTAAAATATGAGGTGCGTTAGTCAAATATAATCATTTCAAACACAGACAGATTGAACAATCTTTACATAATGATGCTTatgcagcagtggaggctgctgagaggCAGTAAATTGTTATTTGTATCCCAAAGTGTGTGTAATTGTGTAACATTGTAAACATTCATGTTAAAGTCAATCAAACTACATATGCAGAGAGACTACTTCAAAGTTGAAATCAAAAGCAACTCATTCTTAGTTGTCATTCTCAATTCATCTATAAAGGCACACAAAGGTTCTGagttataaatataaattaaATGAATAGATTGTTTTGTCTTTTATCATTTGGAATGTTTTTGCtagattttttttgttaaaaaataaattaataatacCTTAACAAAAATTCCTaatacacacaaaacaaactcaATCAAACTATAAATCCTAAACCTGAGCTGTGCTGTGGTAGCCTGAGTCCCAGATCTCTTTGTACTGTCTTCTCAAGTCCAATGTCTTAGAGTTGGCAAGAGAGCCCAAACCGATGTGGGACTCAGGCTAGTGCTGTGGTCAGACAGGCCTGAAGCAGCCAACGTGTTGTGGGGAGGCGGCCTGCATTAGATAGTCCTCTATGTGTTCCTCTACAGTTGAGTACAGGCCCTGGACTTGGTCCTTGAAGGGAGGATGCCACGCCCACAAGATGgccaccgccaccatggacaggAGCAGTGATAGTAGAACACAGAGCCATATCCACGAGA
>TU1609109
TGTTTCATAAATCCTTTATCTTTAAACATAGCCTGCTGCAGGTCATCAAATGGGATCAGGCGTGTTGACACAGCTTTAGCAATTTACAGGCCCACATACTCAATGATAATTTGACAAATATACAGCAGAATATGAACCTGAACAAGCAGTCACCCTCCAGGTCAGTCACTCCTCCAGGACAGTCACTCCTCCAGGACAGTCACTCCTCCAGGACAGTCACCCCTCCAGGACAGTCATTGGACCTTCTACAGTCATTTTATTACAGTCGATTTCCACAAAATGGACAGCACTTGTGACAATAATGTAAACACAATCATTAACATTATGGCCGAGTTCTGATCCGATCGCGCCTTTCACCTTTTAAAGGCAACGTTTCCACACTcacggagactgcattcacggtaaactctGCACATGTCACCTCGGAAGTGACCTTTAAAATGTCAAACG
>TU1609110
TGTTTCATAAATCCTTTATCTTTAAACATAGCCTGCTGCAGGTCATCAAATGGGATCAGGCGTGTTGACACAGCTTTAGCAATTTACAGGCCCACATACTCAATGATAATTTGACAAATATACAGCAGAATATGAACCTGAACAAGCAGTCACCCTCCAGGTCAGTCACTCCTCCAGGACAGTCACTCCTCCAGGACAGTCACTCCTCCAGGATAGTCACCCCTCCAGGACAGTCACTCCTCCAGGACAGTCACCCCTCCAGGACAGTCACTCCTCCAGGACAGTCACCCCTCCAGGACAGTCATTGGACCTTCTACAGTCATTTTATTACAGTCGATTTCCACAAAATGGACAGCACTTGTGACAATAATGTAAACACAATCATTAACATTATGGCCGAGTTCTGATCCGATCGCGCCTTTCACCTTTTAAAGGCAACGTTTCCACACTcacggagactgcattcacggtaaactctGCACATGTCACCTCGGAAGTGACCTTTAAAATGTCAAACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1609108 False 1460 lncRNA 0.43 4 73068362 73070422
TU1609109 False 450 lncRNA 0.44 2 73069379 73070422
TU1609110 True 518 lncRNA 0.46 2 73069379 73070422

Neighbor

gene id symbol gene type direction distance location
LOC110492600 LOC106566373 coding downstream 20690 73040535 ~ 73047672 (-)
LOC110491158 LOC106566369 coding downstream 138596 72904370 ~ 72929766 (-)
LOC110492692 LOC106566365 coding downstream 384735 72646017 ~ 72683627 (-)
LOC110492693 LOC105029198 coding downstream 426989 72620726 ~ 72641373 (-)
LOC110492690 LOC106566363 coding downstream 457115 72540435 ~ 72611247 (-)
si:ch211-150o23.3 LOC106566377 coding upstream 21999 73092421 ~ 73100266 (-)
LOC110491162 LOC106566379 coding upstream 45001 73115423 ~ 73144288 (-)
LOC110492609 LOC106566381 coding upstream 76874 73147296 ~ 73167393 (-)
LOC118939590 NA coding upstream 164094 73222996 ~ 73236615 (-)
LOC110492449 LOC106572884 coding upstream 639707 73710129 ~ 73742096 (-)
G1408560 NA non-coding downstream 18291 73048184 ~ 73050071 (-)
G1408524 NA non-coding downstream 40399 73026985 ~ 73027963 (-)
G1407991 NA non-coding downstream 101892 72966259 ~ 72966470 (-)
G1407989 NA non-coding downstream 106447 72961549 ~ 72961915 (-)
G1407979 NA non-coding downstream 117854 72947609 ~ 72950508 (-)
G1408513 NA non-coding upstream 13355 73083777 ~ 73090354 (-)
G1408571 NA non-coding upstream 23625 73094047 ~ 73094744 (-)
G1408573 NA non-coding upstream 30997 73101419 ~ 73101711 (-)
G1408517 NA non-coding upstream 42994 73113416 ~ 73115117 (-)
G1407755 NA other downstream 630515 72435429 ~ 72437847 (-)
G1407628 NA other downstream 735647 72331806 ~ 72332715 (-)
G1406752 NA other downstream 1522517 71501118 ~ 71547366 (-)
G1406760 NA other downstream 1524893 71539958 ~ 71543469 (-)
G1406514 NA other downstream 1807545 71260322 ~ 71260817 (-)
G1408615 NA other upstream 160390 73230812 ~ 73232954 (-)
ppdpfb LOC106566296 other upstream 699434 73769856 ~ 73777432 (-)
rps21 LOC106572905 other upstream 1102451 74172873 ~ 74182639 (-)
G1409044 NA other upstream 1125103 74195525 ~ 74195951 (-)
G1409407 NA other upstream 1666011 74736433 ~ 74739189 (-)

Expression


Co-expression Network