XLOC_033073 (rft1)


Basic Information

Item Value
gene id XLOC_033073
gene name rft1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 40843786 ~ 40854458 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064266
TGCAGAGTTTTGCAAGCcgtttgtataaatgtaaaaaaaataacgcaaataGTCAATTTTCCTACAAAACGTTTTTTAGAAACTCCagtgacttttattatgaaaCATGGTCAATGTTGAGACGGAAGTGTATTCTGTTTGACAGATTGCACTACAGTTGTTAAAAACCAAAATGAGAGATACTGTTGGGGGTGTAATATCATAGAAAAATATGTGTATGATAAAGCGAAGGTAGCGCTTATAGTTACCCAGTGAGTTTGttgttagtttatttaaattcaggtAAAAAGTTCACGATGGGTTCAGAAGATGTGCTCAAGAGTGCTTCAACACTGGCCTCCTATAATGTTCTGCTTCAGGTGATGTTTCGAGTGTTGACGTTTCTCTTGAACGCTTTTACGTTGCGGTTTGTGTCTAAGGAACTGATAGGCGTAGTTAACGTTAGGTTGATGCTGCTCTATTCAACGTTGGTATTTCTGTCGAGAGAGGCGTTCCGGAGGGCGTGTCTAAGCGGTGAAGGGGCGGGGCGTAACTGGAGACAGGTCATCAACCTGCTATGGCTCAcATTTCCTCTGGGTTGTGTGTGGGGTGtgttgttggtgtgtgtgtggtggtgggTTCTCCAGGCTCCAGATCCGGACTCTATCCCACATTACGTTCCTGCTGTTGGATTGTTCTGTGTGGCCGCACTTACAGAGCTGCTGGCTGAACCTCTCTGGGTTCTTGCACATGCGCACATGTTCGTCCGGCTGAAGGTGATAGCTGAAAGTTTAGCCATGATTGCTAAATGTCTTGTTACTGTCGTGTTGGTGGTGTCTGCGCCTCAGTGGGGGCTCTTTATCTTCTCTGCAGCCCAGTGTGTCTATACAGGGTTTTTGCTGACTTGTTATGTGGTCTACTTCATCCATTTCCTTGGATCAGAGGAAGCGGAGAAGAAATCGTTCCCTGTTTATAGAATGACAGATCTTCTGCCATCCAAAGTGGATCATGagccaCTGCTAAACTGGAAGTTGACCACACTAACCTGGAGCTTTTTCAAACAGTCATTTCTTAAACAAATACTTACTGAAGgCGAGCGTTATGTGATGACTTTTTTGAATGTGCTTAATTTTGGAGACCAGGgggtttatgatataataaataatctgggCTCAATGGTGGCAAGGTTTCTTTTCTTGCCCATTGAGGAGAGTTTCTACGTGTTCTTCGCTAAAGTCCTGGAGCGAGGACGAGatgtacaacaccagaaacaaGAGGAGGTTTCCATGGCAGCTGAAGTACTGGAATGTCTTTTGAAGCTGGTGCTTTTGATTGGTCTGATCATCACAGTTTTTGGTTACGCATATTCTCATCTCGCACTTGACATCTACGGCGGCGAGCTTCTGAGTAACGGAGCTGGGCCAGCTCTCCTACGGTGCTATAGTTGTTATGTTTTGCTGTTAGCCATTAATGGAGTGACggagtgttttgtttttgctgccATGAGCAAAGAGGAGGTCGACAGaTATAATCTGGTGATGCTGGGCCTGTCCGCCTCTTTTCTGCTGCTGTCTTATTGGCTAACCTGGATGTTTGGGGGCGTTGGCTTCATTTTGGCAAACTGCTGCAACATGGCCTTACGAATCACACACAGTATTGTTTACATCCGTCAGTACTTCCTGCAAAGTGAACACAGGCCACTGTGGGGGCTTCGCCCACATTCTGCTGTCCTTGTAGCGCTTGGAGTGAGTGCTGTCATCACAGCTTTCTCTGAGAGCGTGTTTTGCTGTGATGGCGGCTGGCTGCTGAGACTTTTCCATGTAGCTGTTGGGGCCGTTTGTCTCTTGACTGTGGTGATCACAGTATTTCTAACAGAAACAAGGCTTGTGCAGTTTGTCAAGACTCAGTTGTTACCCAAATACAACAAGAAACTTACatgagcttttattttgaaagctgCTGACAGTGAAACCTCTCTGAACTGAGGTGGACACTAATGTGAGGGATGCACCAAATGTTGCAGATTAGAAAATCttacactttattattttttgtttgttttttaatgaggTTTACTCTAAAAGATACAGTTTCTCCACCTGCAGTTTTTGCT
>TCONS_00064267
ATGATTGCTAAATGTCTTGTTACTGTCGTGTTGGTGGTGTCTGCGCCTCAGTGGGGGCTCTTTATCTTCTCTGCAGCCCAGTGTGTCTATACAGGGTTTTTGCTGACTTGTTATGTGGTCTACTTCATCCATTTCCTTGGATCAGAGGAAGCGGAGAAGAAATCGTTCCCTGTTTATAGAATGACAGATCTTCTGCCATCCAAAGTGGATCATGagccaCTGCTAAACTGGAAGTTGACCACACTAACCTGGAGCTTTTTCAAACAGTCATTTCTTAAACAAATACTTACTGAAGgCGAGCGTTATGTGATGACTTTTTTGAATGTGCTTAATTTTGGAGACCAGGgggtttatgatataataaataatctgggCTCAATGGTGGCAAGGTTTCTTTTCTTGCCCATTGAGGAGAGTTTCTACGTGTTCTTCGCTAAAGTCCTGGAGCGAGGACGAGatgtacaacaccagaaacaaGAGGAGGTTTCCATGGCAGCTGAAGTACTGGAATGTCTTTTGAAGCTGGTGCTTTTGATTGGTCTGATCATCACAGTTTTTGGTTACGCATATTCTCATCTCGCACTTGACATCTACGGCGGCGAGCTTCTGAGTAACGGAGCTGGGCCAGCTCTCCTACGGTGCTATAGTTGTTATGTTTTGCTGTTAGCCATTAATGGAGTGACggagtgttttgtttttgctgccATGAGCAAAGAGGAGGTCGACAGaTATAATCTGGTGATGCTGGGCCTGTCCGCCTCTTTTCTGCTGCTGTCTTATTGGCTAACCTGGATGTTTGGGGGCGTTGGCTTCATTTTGGCAAACTGCTGCAACATGGCCTTACGAATCACACACAGTATTGTTTACATCCGTCAGTACTTCCTGCAAAGTGAACACAGGCCACTGTGGGGGCTTCGCCCACATTCTGCTGTCCTTGTAGCGCTTGGAGTGAGTGCTGTCATCACAGCTTTCTCTGAGAGCGTGTTTTGCTGTGATGGCGGCTGGCTGCTGAGACTTTTCCATGTAGCTGTTGGGGCCGTTTGTCTCTTGACTGTGGTGATCACAGTATTTCTAACAGAAACAAGGCTTGTGCAGTTTGTCAAGACTCAGTTGTTACCCAAATACAACAAGAAACTTACatga

Function

symbol description
rft1 Predicted to be involved in glycolipid translocation. Predicted to act upstream of or within dolichol-linked oligosaccharide biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation In. Orthologous to human RFT1 (RFT1 homolog).

GO:

id name namespace
GO:0034203 glycolipid translocation biological_process
GO:0006869 lipid transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005319 lipid transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-110411-126 Predicted to be involved in glycolipid translocation. Predicted to act upstream of or within dolichol-linked oligosaccharide biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation In. Orthologous to human RFT1 (RFT1 homolog).

Ensembl:

ensembl_id ENSDARG00000060398

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064266 False 2092 mRNA 0.44 13 40843786 40854458
TCONS_00064267 True 1143 mRNA 0.46 9 40843959 40851499

Neighbor

gene id symbol gene type direction distance location
XLOC_033072 mustn1a coding downstream 1018 40841156 ~ 40842768 (-)
XLOC_033071 eefsec coding downstream 11541 40822587 ~ 40832245 (-)
XLOC_033070 CR450814.1 coding downstream 24020 40795898 ~ 40819766 (-)
XLOC_033067 arpc4 coding downstream 65492 40743367 ~ 40778294 (-)
XLOC_033074 NA coding upstream 1681 40856139 ~ 40864078 (-)
XLOC_033075 sirt4 coding upstream 22936 40877394 ~ 40922971 (-)
XLOC_033076 CR293534.1 coding upstream 91899 40946357 ~ 40946475 (-)
XLOC_033077 NA coding upstream 109228 40963686 ~ 40968341 (-)
XLOC_033078 slc2a11a coding upstream 121197 40975655 ~ 40992683 (-)
XLOC_033062 CR450814.2 non-coding downstream 176323 40667347 ~ 40667463 (-)
XLOC_033061 NA non-coding downstream 182462 40659954 ~ 40661324 (-)
XLOC_033060 dre-mir-200c non-coding downstream 187498 40656204 ~ 40656288 (-)
XLOC_033059 dre-mir-141 non-coding downstream 187701 40656003 ~ 40656085 (-)
XLOC_033085 NA non-coding upstream 597212 41451670 ~ 41452888 (-)
XLOC_033102 NA non-coding upstream 2203004 43057462 ~ 43072882 (-)

Expression


Co-expression Network