XLOC_033080 (trub2)


Basic Information

Item Value
gene id XLOC_033080
gene name trub2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41023580 ~ 41028698 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064282
GCGACCGTGGTGCTGTAACATCAGTAGAAGAAGAAAATCACCCGGAATTTCAACACAACAACATGTGAAATCGCTGCTTCCCTGTCTGAAGTCATTTCggtcactttttatttttattccactTATGCTTGTCCAATTCGCTTCTGATGAAGATGGCCACGCAGGCCGTACGTCTTTTTCGCAAAATGGACGGTCTGTTTGCGGTGTACAAACCACAGGGAGTTCATTGGAAACTTGTTCGTGACACCATAGAAAGCAATTTTCTCAAAGCGCTGAACTCCAGTCCTCCAGCAGCTCCTCGGCGTGAAGTGCAGTTTCAGCTTCTGTCCAGTGGAGAAAACAGCACATCCAAAGAGCTCATTTTATCTCCATCTATGGTTCCTTCTCTGGCGGATCATCCTTTAGTGACAGGTCCTCAGTTTCACAAGGTTCATGTTGGAGTTGGTCATCGATTGGATGCCTTTTCTTCTGGAGTGTTAGTATTAGGTGTTGGGAAAGGAAATAGTGTCCTGGAGAATCTGTGCAAATCACATGTAACCAgggACTATACGATTGAGGGCGAGTTTGGAAAAGCCACCGATAATTTCAGTCACACTGGTCGGGTCATTGAGAAAACTACATATGACCATATTACCCATGATAAGCTGGAAAGAGTTCTTGCCATGTTACAGGGATCCAATCAGAAAGCCTTGATCACATATTCTCAAGTGGAACTGCAAACTCAGGAGGCTTATGAGCTTGCAGCGAGAGGTTTATTGTATCCTGATGGTAAAAGCCCACCTATTTTGACTGGCCTGCGATGCATAAAATTTAATCCACCTCATTTTACTTTGGAGGTCCGGTGTGTAAATGAGACTCAGAAGTATCTGCGTAAATTGATTCATGAGGTTGGACTGGAGTTGCGGGCCTCTGCGGTCTGTACTAAAGTGCGAAGAACACGAGATGGACCCTTCAAGGTAGAGAACGCACTCACTCGACAACACTGGACTGCAGACAGTGTCTTACAAGCTATTAATCACTTTCGCAAGACTGCCCGCAAAATCAGGAAATCTGGGATGTACATGCAGAGCAATGTCCGGATGACCTTAGACGCAGATACCAGAGAGCAAACTCAGTCTGAACATATGAGTGGAGTGCGGGATGTACTTTCTGACATGATTCTGGAGAGAGAGACACCTGGAGAACCGAATGAGGGGAgaacaaaaaattaaatcaacTGGGAATGATTTGAGTTCTGAGACATATTTACTTGTTCACtataatttatgtatttgttatgttttcattattgtgtgtcattaaatgtgtattttagcAA
>TCONS_00064283
CCTGTCTGAAGTCATTTCggtcactttttatttttattccactTATGCTTGTCCAATTCGCTTCTGATGAAGATGGCCACGCAGGCCGTACGTCTTTTTCGCAAAATGGACGGTCTGTTTGCGGTGTACAAACCACAGGGAGTTCATTGGAAACTTGTTCGTGACACCATAGAAAGCAATTTTCTCAAAGCGCTGAACTCCAGTCCTCCAGCAGCTCCTCGGCGTGAAGTGCAGTTTCAGCTTCTGTCCAGTGGAGAAAACAGCACATCCAAAGAGCTCATTTTATCTCCATCTATGGTTCCTTCTCTGGCGGATCATCCTTTAGTGACAGGTCCTCAGTTTCACAAGGTTCATGTTGGAGTTGGTCATCGATTGGATGCCTTTTCTTCTGGAGTGTTAGTATTAGGTGTTGGGAAAGGAAATAGTGTCCTGGAGAATCTGTGCAAATCACATGTAACCAgggACTATACGATTGAGGGCGAGTTTGGAAAAGCCACCGATAATTTCAGTCACACTGGTCGGGTCATTGAGAAAACTACATATGGTAATATGTTTATTACACTATCAAAATTATTAACCTTAATATCAAGAAactgcagtgcttcccacacatagactttacttggacaggctgcccag

Function

symbol description
trub2 Predicted to enable RNA binding activity and pseudouridine synthase activity. Predicted to act upstream of or within RNA processing and pseudouridine synthesis. Orthologous to human TRUB2 (TruB pseudouridine synthase family member 2).

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0001522 pseudouridine synthesis biological_process
GO:0009451 RNA modification biological_process
GO:0003723 RNA binding molecular_function
GO:0009982 pseudouridine synthase activity molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-040704-41 Predicted to enable RNA binding activity and pseudouridine synthase activity. Predicted to act upstream of or within RNA processing and pseudouridine synthesis. Orthologous to human TRUB2 (TruB pseudouridine synthase family member 2).

Ensembl:

ensembl_id ENSDARG00000028379

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064282 False 1318 mRNA 0.44 8 41023580 41028698
TCONS_00064283 True 639 lncRNA 0.44 5 41026228 41028618

Neighbor

gene id symbol gene type direction distance location
XLOC_033079 hdhd3 coding downstream 1700 41014791 ~ 41021880 (-)
XLOC_033078 slc2a11a coding downstream 30897 40975655 ~ 40992683 (-)
XLOC_033077 NA coding downstream 55239 40963686 ~ 40968341 (-)
XLOC_033076 CR293534.1 coding downstream 77105 40946357 ~ 40946475 (-)
XLOC_033075 sirt4 coding downstream 100609 40877394 ~ 40922971 (-)
XLOC_033081 rab44 coding upstream 29245 41057943 ~ 41079209 (-)
XLOC_033082 srsf3a coding upstream 51305 41080003 ~ 41091448 (-)
XLOC_033083 slc6a22.1 coding upstream 90212 41118910 ~ 41138855 (-)
XLOC_033084 synpr coding upstream 194506 41223204 ~ 41229787 (-)
XLOC_033085 NA coding upstream 422972 41451670 ~ 41452888 (-)
XLOC_033074 NA non-coding downstream 159502 40856139 ~ 40864078 (-)
XLOC_033070 CR450814.1 non-coding downstream 203814 40795898 ~ 40819766 (-)
XLOC_033062 CR450814.2 non-coding downstream 356117 40667347 ~ 40667463 (-)
XLOC_033102 NA non-coding upstream 2028764 43057462 ~ 43072882 (-)
XLOC_033106 BX927362.1 non-coding upstream 2318231 43346929 ~ 43349086 (-)
XLOC_033111 NA non-coding upstream 2951013 43979711 ~ 44002542 (-)
XLOC_033118 NA non-coding upstream 4895244 45923942 ~ 45929175 (-)

Expression


Co-expression Network