G1408289


Basic Information

Item Value
gene id G1408289
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 73710727 ~ 73712546 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1608752
aaacatttcattgCATGAAGTGAGATCATGAAAAGCACTTTACATTGCTACCTTAAAAAGGGAGGCTATAAAGGGTTTTAAACAGTTTATTAATTTGTTCATAGcaatgacatacagtgccttctgtaagtattcataccacttgaccTATTCtacaatttgttgtgttacagcctgaacacacacacaacagtaaaAACATGTTACGAATTTTATGCAAATTTATTGAAACTTAAAATACAGACatgtctcatttacataagtagtcacacccctttgctatgacgctccaaattgagctcaggtgcatccaatttcctttgatcctCCTCGagacatgattggagtccacctgtgagcGGCCAACTCAATTGTTTTGACAGGATTGAGAAAGAAACACACCCGTCTacatatggtcccacagttgacagcagATGTCAGAAAGTATACCAGAAAATATACCATGAAGCccaaggaactgtctgtagatcACCGAGATAGAATTGGGTTGAGTCATATCCGGGGGAAGGTTACACAAccatttctagagtgttgaaagtttccaagagtaCGGAGGTCTTcatcattgggaaattgaaaaatatggatctacccagactctgcctagagatGGCTATCCGACCAAACTGAACAACCGGGCAAGAAttaccttgttcagggaggtgaccaatgaccactctgacagaactacagagttccttggctgagatgggagaacctgccagaaggacaacagtctctacaggcACTTCActaatctgggctttatgggagagtggccagatggaagccactcctgagaaaaagccACATGACAGCATGCCTGACGCTGGCAAAAAAAAGCATTTGAAAGAGCATATCTAAAAAGATTGTGGTCTGATGAGATGAAAAtctaactatttggcctgaatacaAACTGTTACgcctggagaaaaccaggcacagctcgcCTGGAGAAAACCAGGCACAGCTCGCCTGGAGAAAaccttgaagattgctgttcaccattgctccccatctaacttaacagagcttgaaaaaaaaatctgtaaggAAGAATGGGAAGAAAATCCTCAATTCCAGATGACTCAAAGCTTGATAccgacatacccaagacgacgcAAAGCTGTAATCTCCaccaaaggtgtttctacaaagtattgactcaggggtgtgaatacttacgtaaattagatctgtatttcattttcaataaaatgtacaaatatttctaaaaacatgttgttttcactttctttatgggttattgtgtgtagctgggtgaggggaaaaaaaataaaataatctaatccattttgaattcatgctgtaaaacaatgtggaataagtcaaggggtaggaCTACGTTCTGAAGGCAACGTAACTCCCCTTAAATTCTACCTCAATGCAAAGTCTTAccaaataaattaaacaaacaaaaaaatgagaGAAATCTGGCAACCCGAAATTAATCTCTTTCTTGAAAAAGAAAGacttaccacccccccccccccccccccaccaaaacGGCTTCAGCTCGTCCATTGTCCCGGGGTCATCCATGCAGCAACGGAGAGGTCAGAGTTGAAAGGTTACCGCCAGGCCCGGTTGAGCAGTTTGACCTGTGCCAGACGTTTACTGATCATGGTGGCGAAGAACAGCGCGAACAGAACACTGCTGATCAGGACGTAGTCGTAGTCATCTTTCAGCACGTCGAACTGCTTGGAGGGGTACACCCTGGTTTGGTAGATGTCAAGACCGTAC
>TU1608753
aaacatttcattgCATGAAGTGAGATCATGAAAAGCACTTTACATTGCTACCTTAAAAAGGGAGGCTATAAAGGGTTTTAAACAGTTTATTAATTTGTTCATAGcaatgacatacagtgccttctgtaagtattcataccacttgaccTATTCtacaatttgttgtgttacagcctgaacacacacacaacagtaaaAACATGTTACGAATTTTATGCAAATTTATTGAAACTTAAAATACAGACatgtctcatttacataagtagtcacacccctttgctatgacgctccaaattgagctcaggtgcatccaatttcctttgatcctCCTCGagacatgattggagtccacctgtgagcGGCCAACTCAATTGTTTTGACAGGATTGAGAAAGAAACACACCCGTCTacatatggtcccacagttgacagcagATGTCAGAAAGTATACCAGAAAATATACCATGAAGCccaaggaactgtctgtagatcACCGAGATAGAATTGGGTTGAGTCATATCCGGGGGAAGGTTACACAAccatttctagagtgttgaaagtttccaagagtaCGGAGGTCTTcatcattgggaaattgaaaaatatggatctacccagactctgcctagagatGGCTATCCGACCAAACTGAACAACCGGGCAAGAAttaccttgttcagggaggtgaccaatgaccactctgacagaactacagagttccttggctgagatgggagaacctgccagaaggacaacagtctctacaggcACTTCActaatctgggctttatgggagagtggccagatggaagccactcctgagaaaaagccACATGACAGCATGCCTGACGCTGGCAAAAAAAAGCATGGTCTGATGAGATGAAAAtctaactatttggcctgaatacaAACTGTTACgcctggagaaaaccaggcacagctcgcCTGGAGAAAACCAAACCAGGCACAGCTCGCCTGGAGAAAACCAAACCAGGCACAGCTCGCCTGGAGAAAaccttgaagattgctgttcaccattgctccccatctaacttaacagagcttgaaaaaaaaatctgtaaggAAGAATGGGAAGAAAATCCTCAATTCCAGATGACTCAAAGCTTGATAccgacatacccaagacgacgcAAAGCTGTAATCTCCaccaaaggtgtttctacaaagtattgactcaggggtgtgaatacttacgtaaattagatctgtatttcattttcaataaaatgtacaaatatttctaaaaacatgttgttttcactttctttatgggttattgtgtgtagctgggtgaggggaaaaaaaataaaataatctaatccattttgaattcatgctgtaaaacaatgtggaataagtcaaggggtaggaCTACGTTCTGAAGGCAACGTAACTCCCCTTAAATTCTACCTCAATGCAAAGTCTTAccaaataaattaaacaaacaaaaaaatgagaGAAATCTGGCAACCCGAAATTAATCTCTTTCTTGAAAAAGAAAGacttaccacccccccccccccccccccaccaaaacGGCTTCAGCTCGTCCATTGTCCCGGGGTCATCCATGCAGCAACGGAGAGGTCAGAGTTGAAAGGTTACCGCCAGGCCCGGTTGAGCAGTTTGACCTGTGCCAGACGTTTACTGATCATGGTGGCGAAGAACAGCGCGAACAGAACACTGCTGATCAGGACGTAGTCGTAGTCATCTTTCAGCACGTCGAACTGCTTGGAGGGGTACACCCTGGTTTGGTAGATGTCAAGACCGTAC
>TU1608754
aaacatttcattgCATGAAGTGAGATCATGAAAAGCACTTTACATTGCTACCTTAAAAAGGGAGGCTATAAAGGGTTTTAAACAGTTTATTAATTTGTTCATAGcaatgacatacagtgccttctgtaagtattcataccacttgaccTATTCtacaatttgttgtgttacagcctgaacacacacacaacagtaaaAACATGTTACGAATTTTATGCAAATTTATTGAAACTTAAAATACAGACatgtctcatttacataagtagtcacacccctttgctatgacgctccaaattgagctcaggtgcatccaatttcctttgatcctCCTCGagacatgattggagtccacctgtgagcGGCCAACTCAATTGTTTTGACAGGATTGAGAAAGAAACACACCCGTCTacatatggtcccacagttgacagcagATGTCAGAAAGTATACCAGAAAATATACCATGAAGCccaaggaactgtctgtagatcACCGAGATAGAATTGGGTTGAGTCATATCCGGGGGAAGGTTACACAAccatttctagagtgttgaaagtttccaagagtaCGGAGGTCTTcatcattgggaaattgaaaaatatggatctacccagactctgcctagagatGGCTATCCGACCAAACTGAACAACCGGGCAAGAAttaccttgttcagggaggtgaccaatgaccactctgacagaactacagagttccttggctgagatgggagaacctgccagaaggacaacagtctctacaggcACTTCActaatctgggctttatgggagagtggccagatggaagccactcctgagaaaaagccACATGACAGCATGCCTGACGCTGGCAAAAAAAAGCATGGTCTGATGAGATGAAAAtctaactatttggcctgaatacaAACTGTTACgcctggagaaaaccaggcacagctcgcCTGGAGAAAACCAGGCACAGCTCGCCTGGAGAAAaccttgaagattgctgttcaccattgctccccatctaacttaacagagcttgaaaaaaaaatctgtaaggAAGAATGGGAAGAAAATCCTCAATTCCAGATGACTCAAAGCTTGATAccgacatacccaagacgacgcAAAGCTGTAATCTCCaccaaaggtgtttctacaaagtattgactcaggggtgtgaatacttacgtaaattagatctgtatttcattttcaataaaatgtacaaatatttctaaaaacatgttgttttcactttctttatgggttattgtgtgtagctgggtgaggggaaaaaaaataaaataatctaatccattttgaattcatgctgtaaaacaatgtggaataagtcaaggggtaggaCTACGTTCTGAAGGCAACGTAACTCCCCTTAAATTCTACCTCAATGCAAAGTCTTAccaaataaattaaacaaacaaaaaaatgagaGAAATCTGGCAACCCGAAATTAATCTCTTTCTTGAAAAAGAAAGacttaccacccccccccccccccccccaccaaaacGGCTTCAGCTCGTCCATTGTCCCGGGGTCATCCATGCAGCAACGGAGAGGTCAGAGTTGAAAGGTTACCGCCAGGCCCGGTTGAGCAGTTTGACCTGTGCCAGACGTTTACTGATCATGGTGGCGAAGAACAGCGCGAACAGAACACTGCTGATCAGGACGTAGTCGTAGTCATCTTTCAGCACGTCGAACTGCTTGGAGGGGTACACCCTGGTTTGGTAGATGTCAAGACCGTAC

Function

NR:

description
ER membrane protein complex subunit 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1608752 False 1785 lncRNA 0.42 2 73710727 73712546
TU1608753 False 1793 lncRNA 0.43 2 73710727 73712546
TU1608754 True 1758 lncRNA 0.43 3 73710727 73712546
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Neighbor

gene id symbol gene type direction distance location
LOC110491178 LOC106572904 coding upstream 49837 73324102 ~ 73662832 (+)
LOC110491163 LOC106566383 coding upstream 392140 73288840 ~ 73318587 (+)
LOC110492610 LOC106566382 coding upstream 430387 73258142 ~ 73280340 (+)
LOC118939466 NA coding upstream 508394 73201944 ~ 73202333 (+)
LOC110492608 LOC106566378 coding upstream 597737 73098625 ~ 73112990 (+)
LOC118939591 LOC106566297 coding downstream 35939 73748485 ~ 73768113 (+)
trnae-cuc-170 NA coding downstream 65211 73777757 ~ 73777828 (+)
LOC118939592 NA coding downstream 115512 73827832 ~ 73833251 (+)
adrm1 adrm1 coding downstream 156742 73869288 ~ 73879109 (+)
LOC110516815 syp coding downstream 1066500 74779046 ~ 74814478 (+)
G1408290 NA non-coding upstream 192 73710148 ~ 73710535 (+)
G1408286 NA non-coding upstream 4763 73705550 ~ 73705964 (+)
G1408284 NA non-coding upstream 9288 73701179 ~ 73701439 (+)
G1408282 NA non-coding upstream 26893 73683095 ~ 73683834 (+)
G1408281 NA non-coding upstream 27880 73682559 ~ 73682847 (+)
G1408316 NA non-coding downstream 37935 73750481 ~ 73755046 (+)
G1408317 NA non-coding downstream 40526 73753072 ~ 73753447 (+)
G1408324 NA non-coding downstream 51193 73763739 ~ 73764611 (+)
G1408313 NA non-coding downstream 57300 73769846 ~ 73773319 (+)
G1408176 NA other upstream 284461 73425747 ~ 73426266 (+)
G1407566 NA other upstream 781008 72911983 ~ 72929719 (+)
LOC110491159 LOC105013496 other upstream 827201 72824995 ~ 72894201 (+)
LOC110492598 LOC106566362 other upstream 894004 72808730 ~ 72818165 (+)
G1408335 NA other downstream 90585 73803131 ~ 73804334 (+)
G1410289 NA other downstream 2232990 75945536 ~ 75945963 (+)
G1410291 NA other downstream 2233450 75945996 ~ 75946333 (+)
LOC118939596 LOC106566356 other downstream 2251879 75964289 ~ 76061287 (+)

Expression

G1408289 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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G1408289 Expression in each Bioproject

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G1408289 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network