XLOC_033085


Basic Information

Item Value
gene id XLOC_033085
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 41451670 ~ 41452888 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065218
AACAACGAGGTTATTCTAGTAATTTGGTACTGAAATGACAGCTGTAACGAGGATGCAGAATTTCACATGGCTTCTCCATCTACTGTTTTTTATTTCTAGCAAGTCTTACCCTTAATTTTTAGTAATTATGAAACCACATTTGCAGTTAATCATTATTACATTCAGTTTCCTTTACAATTTTTGAGTGTTTTTACAGTTAATTTCAAAGAGGATATTAATATCACACTACAAAATTACCTCTTCTTTCTCATATGACACATTCTGCACATAGACATCAATTCTAGCCTCACCCAGAACCCCAAACACAACCAGGGGTATAAAAGCAAGTACTGCATTGTTCTaaacaaaaacacagagaaaaccaGCATCAAACGTTTATGAACCATTAAAGTCTTTTTGTTTAGAAAAAGAACAGGATTAATTAATTGTCCTATGCTTTCTAACAAATCTACAATGGCAGGTGTTTCAAAGGTGAGTGTTGTTTAAAGTCTAGTTTGAACACCTCTGCAAACAATTTGTTAATGCTGTATGATTATTATGAATTAAccataaacttgttttttttttttttcaaagggtGAAATTTGCACTGTTGGAGATATTTACGTATTAACAGTGAATGTAAGTGAGTTTGCACCGGAAGAAGTTATAGTAACCTCAACCAGTAATGCAATACAAGTCTTTGCAGAAAAGGTAAGCAAAATAAACCTAAACATTTTTAAGCTTAaacacattaaacaaaaatatattgtatttactCCTTTTGGTTTGTCTTTTTCAAATTTTCCCCTGACTTATGAATAAGTTGGCATCAGATGGCACAGTTTTGGACGTCATTCGACAGAAGTACCAATTTCCAGCTGATGTGGATCCAATGTCAGTTACATCGTTTCTAGGGAAAGGTGGATTGTTGATGATTAAAGctcaaaaacacacaacaaaaaacTTGTGAATTATGGATTGAAACAAAGATGTGAAACCTGTTGCTTGGATGCTTATTATTTTAGAAAGGGTACTGTTTTCTTTGGTTTATTGAACAAAATGTTTTATACTTTagcacagatttttatttttgactttctgaatatatacacataaatctGTGACTATCCTGAAATTACAAGCACATTCATTTATTgagatgtcatttttatttttggtcactgtttaaaatatttgcacttaacactactaaaatgtctaataaacatgtaaaaac

Function

GO:

id name namespace
GO:0062023 collagen-containing extracellular matrix cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065218 True 1219 lncRNA 0.32 1 41451670 41452888

Neighbor

gene id symbol gene type direction distance location
XLOC_033084 synpr coding downstream 221883 41223204 ~ 41229787 (-)
XLOC_033083 slc6a22.1 coding downstream 312815 41118910 ~ 41138855 (-)
XLOC_033082 srsf3a coding downstream 360222 41080003 ~ 41091448 (-)
XLOC_033081 rab44 coding downstream 372461 41057943 ~ 41079209 (-)
XLOC_033080 trub2 coding downstream 422972 41023580 ~ 41028698 (-)
XLOC_033086 hemk1 coding upstream 57247 41510135 ~ 41536323 (-)
XLOC_033087 cav3 coding upstream 543178 41996066 ~ 42003780 (-)
XLOC_033088 gpr61l coding upstream 578948 42031836 ~ 42036685 (-)
XLOC_033089 parp3 coding upstream 585470 42038358 ~ 42049350 (-)
XLOC_033090 grm2a coding upstream 598592 42051480 ~ 42112191 (-)
XLOC_033077 NA non-coding downstream 483329 40963686 ~ 40968341 (-)
XLOC_033076 CR293534.1 non-coding downstream 505195 40946357 ~ 40946475 (-)
XLOC_033074 NA non-coding downstream 587592 40856139 ~ 40864078 (-)
XLOC_033070 CR450814.1 non-coding downstream 631904 40795898 ~ 40819766 (-)
XLOC_033062 CR450814.2 non-coding downstream 784207 40667347 ~ 40667463 (-)
XLOC_033102 NA non-coding upstream 1604574 43057462 ~ 43072882 (-)
XLOC_033106 BX927362.1 non-coding upstream 1894041 43346929 ~ 43349086 (-)
XLOC_033111 NA non-coding upstream 2526823 43979711 ~ 44002542 (-)
XLOC_033118 NA non-coding upstream 4471054 45923942 ~ 45929175 (-)
XLOC_033121 BX005101.1 non-coding upstream 4715129 46168017 ~ 46251940 (-)

Expression


Co-expression Network