XLOC_033090 (grm2a)


Basic Information

Item Value
gene id XLOC_033090
gene name grm2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42051480 ~ 42112191 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064301
AGGGCAATGGTGAATTTGCAGATTATGCATCATCTAATGCTCAATCTGTCTGTTTGATCCACAGATTGTGATCTTTTCTAACAAGCGGGAGATGGCGGAGATCCTCCAGTTTGCTTATGCCTGCTTACTCTCACACTCAACTGTCTGAAGTCTTACTCTAGCACTAGTCTAAGCATTCCTCCTTTCCAATAAGCGAAAGGACCAAAGACTGGCAAACAGGGATTGACCCTGTTAAATGCACCGATCTTTGCGCACCATGGCTCAGAGGTCAGCTCATTTTAGAGGTCACGGGCCCTCCTGGCCGCTTCACCTCACTCTGCTGCTGCTTCTGTTGGCCAGGACACCTCAAGCATTGGCAATTCCAGGGTACAACACTGACACCTCCAAGAAGGAGATCGTAATGGATGGAGATCTAGTGATCGGAGGCCTGTTCCCTGTTCATCATAAAGGGGAAGGAGCTCAGGACTGTGGCCGAATTAATACACAGAGAGGGATTCAGAGACTTGAGGCAATGCTGTTAGCTTTGGACAAGATCAATCAGGATGATCAGATTTTGCCCGGGGTGACGTTAGGTGCCCACATTCTGGACACTTGCTCCAAAGACACATACGCACTCGAGCAGTCACTTGAATTTGTGCGTGCTTCGCTTACGAAAGTGGACGATAGTGAGTACACGTGTCCGGATGGATCCTACGCCATCCACGATGACGTTCCGCTCGCAATATCAGGCGTGATTGGAGGATCCTACAGCGATGTATCCATACAGGTGGCCAATCTCCTACGCCTTTTCCAGATCCCTCAGATCAGTTATGCCTCCACCAGTGCAAAACTGAGTGACAAATCCCGCTATGATTACTTTGCCCGGACTGTACCTCCTGACTTCTACCAAGCCAAAGCCATGGCTGAGATCCTACGCTTCTTCAACTGGACGTACGTCTCCACTGTGGCCTCAGAGGGAGATTACGGCGAGACGGGCATCGACGCCTTTCAGCAAGAAGCTCGGGCCTTACAAATCTGCATTGCAACATCTGCCAAAGTCAGTCGCTCCATGGACCAATACAGTTATGATGGAGTGATCAGATCTCTGTTGCAGAAGTCCAACGCTAAAGTGGTAATCCTGTTCACCAGAAGTGAAGATGCAAGAGAGTTGTTGGTCGCTGCGAAGCGAATGAATGTCTCCTTCATCTGGGTGGCCAGTGATGGATGGGGAGCGCAGGAGGTTGTGGTGAGAGGGAGTGAAAGTGTTGCGGATGGAGCTTTTACTATTGAGCTTGCGTCATATACCATCCCTGAATTCGCAGCGTACTTTACAAACCTCAATCCGTATAACAACACACGTAACCCGTGGTTCAGAGAGTTCTGGGAGAACAAATTCCAGTGCAGTCTGCATGATATTACCTGTGGGAAACATTCTCTTCGGGATGGTAAATTCGAGCAGGAGTCTAAAATCATGTTTGTGGTGAATGCAGTGTATGCTATGGCCAATGCGCTTCACCACATGAGGCAGGCATTGTGCGCCAATAGCACCAAACTTTGCAGTGCCATGAAACCTGTGAACGGGAAAAGGCTGTATAAGGACTACATCCTGAAGACAAAGTTTGATGCTCCATTTCGCCCGGCCGATACTGATAACATCATTCACTTTGATGCATACGGAGACAGTTTGGGCCGCTACAACATCTTCCATTATCACAAAGAGAATGATGAGTACGTCTATAGAAAGGTGGGCTACTGGGCTCAGGATTTGACTCTGAACACAACCTTAATTCCTTGGGAGAGCCAAGCGGTGCCCACATCCCAGTGCAGCGACCCATGTAGGAAAAACGAAATTAAAAGCATGCAGCCCGGAGATGTTTGCTGCTGGATTTGCATTCCCTGTCAGCCCTACCAATACCTCCTGGATGAATTCACATGTGCGGATTGTAGCTTCGGACAGTGGCCTCTAGACAATCTCACAGGCTGTTATGACTTACCTGAGGAGTACATTCATTGGGAGGATGCCTGGGCAATTGGACCTGTCTCTATTGCTTGCCTCGGCATGCTTTGCACGCTCTTCGTCATTGGCCTCTTCCTGAAAAACAACGAGACTCCGGTGGTGAAGGCTAGTGGACGGGAACTTTCCTATATTCTTCTCCTAGGCGTCCTTCTTTGCTATTTCATGACTTTCATCTACATCAGCAAACCTTCAGCCGTTGTGTGCACGTTACGACGGCTCGGTCTGGGCACGTCCTTCGCCGTTTGCTACTCTGCATTACTCACCAAGACCAATCGCATTGCTCGGATTTTCAACGGTGTTAAAGATGGAGCTCAAAGGCCGAGGTTCATCAGTCCAGCCTCACAGGTGGCCATCTGCGCTGCTCTTATCTCCTGTCAGCTTCTTGTGGTAGTGGTCTGGCTCCTGGTCGAGGCTCCGGGGGTGAGAAAGGAGGTCAGTCCTGAAAGAAGAGACGTGGTGACATTGAAGTGCAACAGCAAGGACTCGAGCATGCTGATGTCCTTAACCTACAACTGTGTCCTCATCATCCTCTGTACCTTTTATGCCTTTAAGACTCGAAAGTGCCCAGAGAACTTCAACGAAGCCAAGTTCATCGGCTTCACCATGTACACCACATGTATAATCTGGCTGGCTTTCCAGCCCATCTTCTATGTTACTGCCAGTGACTATAGGGTACAGACCACAACCATGTGCATCTCTGTGAGTCTGAGCGGTTCGGTGGTTCTGGGCTGCCTCTTCGCTCCCAAAATCCACATCATCCTCTTTCAGCCGCAAAAGAACGTCACCACACTCAGAGTGGCCACCACGCGCTTTAGTGTGACCACCGGCCCCGGCTCCAGCTTCTCTCAAGCCTCGGCCTCCAACATTGTGCCTACAGTATGTAATGGCAGAGAGGTAGTGGACTCAACAACATCTTCACTCTGAGAAACAGGATTCCTGTTTGTTTGCCAAATGCGATTTACTGATAAATCCTATCTTCACTAGTCATGAAATCAAGTGTTTGCTAATGTTGAGAAGGCTATTCTGGATAAAGAATAAAGCCTGTTATGTTGTTCTCAACGTGCTGTGAGTACAATATCCCATTTGTTTCTCTTTCTCTTACTCTTTCTCTATCTGACTAGTTAGATCATATCAGTGGGATGCCAGTTTAAACTCTGTATACCCATTCTTTTTATGGAAACCATAATAAAGTATTGTTTGAGATATGGAGTTAAAATATAGTAAATCTGTTTAAAGTATTATATACGAGATGTTTTTAATGTAGATTTCTGGTGATTCTGGTTTGTGCTTTCTtgtaatttatgtaaataaaatgtgttttttatgaaTTCAAGCTTTGTGGTtgatttactgtctttatta
>TCONS_00064302
TTCAGGTGGCCAATCTCCTACGCCTTTTCCAGATCCCTCAGATCAGTTATGCCTCCACCAGTGCAAAACTGAGTGACAAATCCCGCTATGATTACTTTGCCCGGACTGTACCTCCTGACTTCTACCAAGCCAAAGCCATGGCTGAGATCCTACGCTTCTTCAACTGGACGTACGTCTCCACTGTGGCCTCAGAGGGAGATTACGGCGAGACGGGCATCGACGCCTTTCAGCAAGAAGCTCGGGCCTTACAAATCTGCATTGCAACATCTGCCAAAGTCAGTCGCTCCATGGACCAATACAGTTATGATGGAGTGATCAGATCTCTGTTGCAGAAGTCCAACGCTAAAGTGGTAATCCTGTTCACCAGAAGTGAAGATGCAAGAGAGTTGTTGGTCGCTGCGAAGCGAATGAATGTCTCCTTCATCTGGGTGGCCAGTGATGGATGGGGAGCGCAGGAGGTTGTGGTGAGAGGGAGTGAAAGTGTTGCGGATGGAGCTTTTACTATTGAGCTTGCGTCATATACCATCCCTGAATTCGCAGCGTACTTTACAAACCTCAATCCGTATAACAACACACGTAACCCGTGGTTCAGAGAGTTCTGGGAGAACAAATTCCAGTGCAGTCTGCATGATATTACCTGTGGGAAACATTCTCTTCGGGATGGTAAATTCGAGCAGGAGTCTAAAATCATGTTTGTGGTGAATGCAGTGTATGCTATGGCCAATGCGCTTCACCACATGAGGCAGGCATTGTGCGCCAATAGCACCAAACTTTGCAGTGCCATGAAACCTGTGAACGGGAAAAGGCTGTATAAGGACTACATCCTGAAGACAAAGTTTGATGCTCCATTTCGCCCGGCCGATACTGATAACATCATTCACTTTGATGCATACGGAGACAGTTTGGGCCGCTACAACATCTTCCATTATCACAAAGAGAATGATGAGTACGTCTATAGAAAGGTGGGCTACTGGGCTCAGGATTTGACTCTGAACACAACCTTAATTCCTTGGGAGAGCCAAGCGGTGCCCACATCCCAGTGCAGCGACCCATGTAGGAAAAACGAAATTAAAAGCATGCAGCCCGGAGATGTTTGCTGCTGGATTTGCATTCCCTGTCAGCCCTACCAATACCTCCTGGATGAATTCACATGTGCGGATTGTAGCTTCGGACAGTGGCCTCTAGACAATCTCACAGGCTGTTATGACTTACCTGAGGAGTACATTCATTGGGAGGATGCCTGGGCAATTGGACCTGTCTCTATTGCTTGCCTCGGCATGCTTTGCACGCTCTTCGTCATTGGCCTCTTCCTGAAAAACAACGAGACTCCGGTGGTGAAGGCTAGTGGACGGGAACTTTCCTATATTCTTCTCCTAGGCGTCCTTCTTTGCTATTTCATGACTTTCATCTACATCAGCAAACCTTCAGCCGTTGTGTGCACGTTACGACGGCTCGGTCTGGGCACGTCCTTCGCCGTTTGCTACTCTGCATTACTCACCAAGACCAATCGCATTGCTCGGATTTTCAACGGTGTTAAAGATGGAGCTCAAAGGCCGAGGTTCATCAGTCCAGCCTCACAGGTGGCCATCTGCGCTGCTCTTATCTCCTGTCAGCTTCTTGTGGTAGTGGTCTGGCTCCTGGTCGAGGCTCCGGGGGTGAGAAAGGAGGTCAGTCCTGAAAGAAGAGACGTGGTGACATTGAAGTGCAACAGCAAGGACTCGAGCATGCTGATGTCCTTAACCTACAACTGTGTCCTCATCATCCTCTGTACCTTTTATGCCTTTAAGACTCGAAAGTGCCCAGAGAACTTCAACGAAGCCAAGTTCATCGGCTTCACCATGTACACCACATGTATAATCTGGCTGGCTTTCCAGCCCATCTTCTATGTTACTGCCAGTGACTATAGGGTACAGACCACAACCATGTGCATCTCTGTGAGTCTGAGCGGTTCGGTGGTTCTGGGCTGCCTCTTCGCTCCCAAAATCCACATCATCCTCTTTCAGCCGCAAAAGAACGTCACCACACTCAGAGTGGCCACCACGCGCTTTAGTGTGACCACCGGCCCCGGCTCCAGCTTCTCTCAAGCCTCGGCCTCCAACATTGTGCCTACAGTATGTAATGGCAGAGAGGTAGTGGACTCAACAACATCTTCACTCTGAGAAACAGGATTCCTGTTTGTTTGCCAAATGCGATTTACTGATAAATCCTATCTTCACTAGTCATGAAATCAAGTGTTTGCTAATGTTGAGAAGGCTATTCTGGATAAAGAATAAAGCCTGTTATGTTGTTCTCAACGTGCTGTGAGTACAATATCCCATTTGTTTCTCTTTCTCTTACTCTTTCTCTATCTGACTAGTTAGATCATATCAGTGGGATGCCAGTTTAAACTCTGTATACCCATTCTTTTTATGGAAACCATAATAAAGTATTGTTTGAGATATGGAGTTAAAATATAGTAAATCTGTTTAAAGTATTATATACGAGATGTTTTTAATGTAGATTTCTGGTGATTCTGGTTTGTGCTTTCTtgtaatttatgtaaataaaatgtgttttttat

Function

symbol description
grm2a Predicted to enable group II metabotropic glutamate receptor activity. Predicted to be involved in G protein-coupled glutamate receptor signaling pathway and regulation of glutamatergic synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; retinal neural layer; and trigeminal ganglion. Orthologous to human GRM2 (glutamate metabotropic receptor 2).

GO:

id name namespace
GO:0051966 regulation of synaptic transmission, glutamatergic biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007216 G protein-coupled glutamate receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001641 group II metabotropic glutamate receptor activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8097 Predicted to enable group II metabotropic glutamate receptor activity. Predicted to be involved in G protein-coupled glutamate receptor signaling pathway and regulation of glutamatergic synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; retinal neural layer; and trigeminal ganglion. Orthologous to human GRM2 (glutamate metabotropic receptor 2).

Ensembl:

ensembl_id ENSDARG00000004150

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064301 False 3358 mRNA 0.47 5 42051480 42112191
TCONS_00064302 True 2560 mRNA 0.47 4 42051517 42073367

Neighbor

gene id symbol gene type direction distance location
XLOC_033089 parp3 coding downstream 2130 42038358 ~ 42049350 (-)
XLOC_033088 gpr61l coding downstream 14795 42031836 ~ 42036685 (-)
XLOC_033087 cav3 coding downstream 47700 41996066 ~ 42003780 (-)
XLOC_033086 hemk1 coding downstream 515157 41510135 ~ 41536323 (-)
XLOC_033085 NA coding downstream 598592 41451670 ~ 41452888 (-)
XLOC_033091 tex264a coding upstream 33435 42145626 ~ 42290259 (-)
XLOC_033092 fancd2 coding upstream 179117 42291308 ~ 42336995 (-)
XLOC_033093 usp4 coding upstream 232814 42345005 ~ 42369186 (-)
XLOC_033094 emc3 coding upstream 257808 42369999 ~ 42377307 (-)
XLOC_033095 sec61a1l coding upstream 265720 42377911 ~ 42388608 (-)
XLOC_033077 NA non-coding downstream 1083139 40963686 ~ 40968341 (-)
XLOC_033076 CR293534.1 non-coding downstream 1105005 40946357 ~ 40946475 (-)
XLOC_033074 NA non-coding downstream 1187402 40856139 ~ 40864078 (-)
XLOC_033070 CR450814.1 non-coding downstream 1231714 40795898 ~ 40819766 (-)
XLOC_033102 NA non-coding upstream 945271 43057462 ~ 43072882 (-)
XLOC_033106 BX927362.1 non-coding upstream 1234738 43346929 ~ 43349086 (-)
XLOC_033111 NA non-coding upstream 1867520 43979711 ~ 44002542 (-)
XLOC_033118 NA non-coding upstream 3811751 45923942 ~ 45929175 (-)
XLOC_033121 BX005101.1 non-coding upstream 4055826 46168017 ~ 46251940 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_10504461_10536413 GRM2A, GRM2 coding CI01000340 null 10504353 ~ 10537693 (-)