XLOC_033094 (emc3)


Basic Information

Item Value
gene id XLOC_033094
gene name emc3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42369999 ~ 42377307 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064307
ACATCTTCAGGGCAGCAGTGGCTCTATGGTGTCGCATCCTGATTCGAGTCGTTATCGGTCTTCTCACAGATAAACCGTCATTTGAATACGAGAGCAGGGTGGTGAAATTCCATCAGCATCTCTTCCTAAAAAGCATGGCTGAGCCCGAGCTCCTCCTGGACTCCAACATCCGTCTTTGGGTTGTGCTGCCAATTGTATTTATTACTTTTCTCGTTGGTGTGATCCGCCATTATGTCTCAATTCTGTTACAAAGTGATAAGAAGCTTACATTAGAGCAGGTTTCAGACAGCCAGGTTCTTATCAGGAGCAGAGTTTTACGAGAAAATGGCAAATACATCCCTAAACAATCTTTCTTGATGAGAAAATTCTACTTCAATAACCAAGAAGATGGGTTTTTTAAGAAGACTAAGAGAAAGGTGGTCCCACCGTCTCCGATGACTGATCCGAGCATGTTGACCGATATGATGAAAGGCAACGTGACAAATGTCCTGCCTATGATTCTTATTGGTGGTTGGATCAACTGGACCTTCTCTGGGTTTGTTACAACAAAAGTACCGTTCCCTCTCACACTCCGCTTCAAGCCAATGCTGCAGCAGGGAATTGAGTTGCTCTCTCTAGATGCCTCCTGGGTGAGCTCAGCATCTTGGTATTTCCTGAATGTCTTTGGTCTCAGGAGTATGTATTCCCTGATTCTTGGACAGGATAATGGTGCAGATCAGTCTCGCATTATGCAGGAACAGATGAGTGGTGCTGCAATGGCAATGCCAGCTGATACAAACAAAGCATTCAAGGCTGAATGGGAGGCGCTGGAGTTGACTGATCACCAATGGGCTTTGGAGAATGTTGAGGAGGATCTAATGAGTAAGGACTTGGATTTGTCTGGGATGTTCAGCAAAGACTTGCCAACGGGCATCTTTTAAGTGCCTGTTCACTACTGAGAGGTGTTGGCAGACCTCACTGAGTTAAAAAGAGCGAATTGTCGGACTGGTTTTGGAGTGACCATACGCTTCCAGTCAGAGTTGTCTTTCTAGAAAGTGTCATAAACATCATTGCTGACATATCACATTTTGTGTCATATGCATGCACCGTTCCCTCCACTGCTGATTTTTTGCTCAGACTTGAGCATTATAGTTTGATCAAGCCTAGAGCTTAATGGATTTTACAGATTACAGTGAAAACCAtagtgtagctgttttttttaacattcctccattaatattaatattttttatttgatttctcttaaacaaatttatattaattttagttgttttaaaagCCCTTTTCTTGGTCTTATTTCACTAGGACAGTGTGATTGTTTGGACCAAACAGACAAAAAGGAAGTTTTAGGAAGTAAAGTGGTTTAAAATGGAGCAGTCcataatttagtttgtttcataaatagtattttcaaaatgtaatagACTTTTAGATGCTTTATGATGCCAATAACACACCACACACTaagtatattgtttttaaaaacaaacaatttggaATTAAGATCATTGAGTAGATTTTCCTCATTAGAAATTCATATTTATTGAGTTGTTAgcttgtaatatatatatttttggacttttattaaacatctttgttttttttttttaatacatttttccaCATCACCTTTCCTGGATGTGcacatttttaatacaaaaacagTCATGCACTGTtctgttttctgtatttattttttaactagcTTTTCTACCACTGCTGATTTTATTTGGTCCATTTGTGCAGATTCATTGCTTTCAAGAAACAAGTGTAGTCTTCGTAATTTCCAGcaaaatttaattatttgctcTGCCACTTTGAAAACTTCAACTGGGGCCTGTAACATAAAGCCAGATTAGATGTCTAGCCAGttaaatttctgtttagtttgcaCCAGTCTTGGGTTTTAGGTGACGTGACGGCAACTTGAATTTAATCACTCTTGTTGTGGTATTATGGAGTAGCTTAGTTGAgctaggtggcatggtggctcagtggttagcactgtcgcctcactacAAGAAGATTGCTAGTTTGGttccagctggcatttctgtgtgaagtttgcatgttctccccatgttggtgtgggttttctccgggagctccagtttcccccacagtccaaagacatgcgctataggtgtactgctcttaattggctgtagtgtggtttttctcagtactgggttggggctggaagggcatccgctgcgtaaaacatgctgtgATAAATAAGGGCCtaaactgaaagaaaatgaataaatgaatgaatgaatgaatgaatgaatgaataaatgaatgaatgagctgagCTACCTTTATGGTATATAAAAAACAGAATTGGTGCAAACTATTCTGGCTTCACGGTGCAGGCCCCTGATCCTCCCTGCAGTGGCTTGTTAAAAAATACCTACACAACAATATAATCATGATTTAACTAAAATGTTGATCATTtatattaaagaaaacaaaaatgtacatttttggaccTTTGAATAAAACGCTATTTATCGAAACCAGTACAGTTTtgtaaacatgttaataaaacCATCATGCAACATA
>TCONS_00064308
CTATGGTGTCGCATCCTGATTCGAGTCGTTATCGGTCTTCTCACAGATAAACCGTCATTTGAATACGAGAGCAGGGTGGTGAAATTCCATCAGCATCTCTTCCTAAAAAGCATGGCTGAGCCCGAGCTCCTCCTGGACTCCAACATCCGTCTTTGGGTTGTGCTGCCAATTGTATTTATTACTTTTCTCGTTGGTGTGATCCGCCATTATGTCTCAATTCTGTTACAAAGTGATAAGAAGCTTACATTAGAGCAGGTTTCAGACAGGTAACATTTATCGTCCGTCTACTTTTATTtctaaaacacacaaaatatttcaaactATTTTTGAATGTCCTCCACACAGCCAGGTTCTTATCAGGAGCAGAGTTTTACGAGAAAATGGCAAATACATCCCTAAACAATCTTTCTTGATGAGAAAATTCTACTTCAATAACCAAGAAGATGGGTTTTTTAAGAAGACTAAGAGAAAGGTGGTCCCACCGTCTCCGATGACTGATCCGAGCATGTTGACCGATATGATGAAAG

Function

symbol description
emc3 Predicted to contribute to membrane insertase activity. Acts upstream of or within photoreceptor cell maintenance and retina development in camera-type eye. Located in Golgi apparatus and trans-Golgi network transport vesicle. Is expressed in several structures, including brain; digestive system; eye; immature eye; and yolk syncytial layer. Orthologous to human EMC3 (ER membrane protein complex subunit 3).

GO:

id name namespace
GO:0045494 photoreceptor cell maintenance biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0030140 trans-Golgi network transport vesicle cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-2904 Predicted to contribute to membrane insertase activity. Acts upstream of or within photoreceptor cell maintenance and retina development in camera-type eye. Located in Golgi apparatus and trans-Golgi network transport vesicle. Is expressed in several structures, including brain; digestive system; eye; immature eye; and yolk syncytial layer. Orthologous to human EMC3 (ER membrane protein complex subunit 3).

Ensembl:

ensembl_id ENSDARG00000020607

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064307 False 2565 mRNA 0.39 9 42369999 42377307
TCONS_00064308 True 527 lncRNA 0.41 4 42374820 42377284

Neighbor

gene id symbol gene type direction distance location
XLOC_033093 usp4 coding downstream 813 42345005 ~ 42369186 (-)
XLOC_033092 fancd2 coding downstream 33004 42291308 ~ 42336995 (-)
XLOC_033091 tex264a coding downstream 79740 42145626 ~ 42290259 (-)
XLOC_033090 grm2a coding downstream 257808 42051480 ~ 42112191 (-)
XLOC_033089 parp3 coding downstream 320649 42038358 ~ 42049350 (-)
XLOC_033095 sec61a1l coding upstream 604 42377911 ~ 42388608 (-)
XLOC_033096 ip6k2a coding upstream 31775 42409082 ~ 42418225 (-)
XLOC_033097 edem1 coding upstream 555450 42932757 ~ 42949184 (-)
XLOC_033098 arl8ba coding upstream 574653 42951960 ~ 42971184 (-)
XLOC_033099 tnfrsf18 coding upstream 597971 42975278 ~ 42983843 (-)
XLOC_033085 NA non-coding downstream 917111 41451670 ~ 41452888 (-)
XLOC_033077 NA non-coding downstream 1401658 40963686 ~ 40968341 (-)
XLOC_033076 CR293534.1 non-coding downstream 1423524 40946357 ~ 40946475 (-)
XLOC_033074 NA non-coding downstream 1505921 40856139 ~ 40864078 (-)
XLOC_033070 CR450814.1 non-coding downstream 1550233 40795898 ~ 40819766 (-)
XLOC_033102 NA non-coding upstream 680155 43057462 ~ 43072882 (-)
XLOC_033106 BX927362.1 non-coding upstream 969622 43346929 ~ 43349086 (-)
XLOC_033111 NA non-coding upstream 1602404 43979711 ~ 44002542 (-)
XLOC_033118 NA non-coding upstream 3546635 45923942 ~ 45929175 (-)
XLOC_033121 BX005101.1 non-coding upstream 3790710 46168017 ~ 46251940 (-)

Expression


Co-expression Network