G1409871



Basic Information


Item Value
gene id G1409871
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 75316253 ~ 75319186 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1610837
GTGTTAAGAGTTTACTGAATTACAGCTAAAGTTATAGCCCAGTAAATCATCATAGTTAAATCACATTACGCAACTTGCCTTTTTATACAACAACATGTGGACATTGAAAGTGTAACAAAATACAAGTTTAGTAGgtccgtttcaactataacagcaacagtttagtaggtccgtttcaactataacagcaacagtttagtaggtccgtttcaactataacagcaac
>TU1610836
GTGTTAAGAGTTTACTGAATTACAGCTAAAGTTATAGCCCAGTAAATCATCATAGTTAAATCACATTACGCAACTTGCCTTTTTATACAACAACATGTGGACATTGAAAGTGTAACAAAATACAAGTTTAGTAGGTCCGTTTCCACTAtaacatgaacagtttagtaGGTCCGTTTCCACTAtaacatgaacagtttagtaGGTCCGTTTCCACTAtaacatgaacagtttagtaGGTCCGTTTCAACTATAACAGCAACAGTTTAGTAGGTCCGTTTC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1610837 False 226 lncRNA 0.35 2 75316253 75319186
TU1610836 True 279 lncRNA 0.35 3 75317282 75319186

Neighbor


gene id symbol gene type direction distance location
LOC110491183 LOC106566345 coding downstream 269280 75029607 ~ 75046973 (-)
irak1 LOC106566344 coding downstream 300874 74986625 ~ 75015379 (-)
LOC110492703 LOC106566343 coding downstream 331418 74922068 ~ 74984835 (-)
LOC118939467 NA coding downstream 410455 74900487 ~ 74905798 (-)
LOC110512152 LOC106566317 coding downstream 558849 74657798 ~ 74757404 (-)
LOC118939468 NA coding upstream 52434 75371620 ~ 75372905 (-)
LOC110492917 LOC106566358 coding upstream 280848 75600034 ~ 75615122 (-)
LOC110492699 tcea2 coding upstream 785023 76104209 ~ 76119590 (-)
LOC110492709 LOC106566328 coding upstream 1242071 76561257 ~ 76642094 (-)
usp21 LOC106566311 coding upstream 1338717 76657903 ~ 76693758 (-)
G1409870 NA non-coding downstream 11152 75304879 ~ 75305101 (-)
G1409869 NA non-coding downstream 12888 75302883 ~ 75303365 (-)
G1409868 NA non-coding downstream 13600 75302326 ~ 75302653 (-)
G1409867 NA non-coding downstream 14123 75301742 ~ 75302130 (-)
G1409843 NA non-coding downstream 51978 75263872 ~ 75264275 (-)
G1409877 NA non-coding upstream 9302 75328488 ~ 75329314 (-)
G1409883 tfe3 non-coding upstream 22379 75341565 ~ 75343084 (-)
G1409884 NA non-coding upstream 23908 75343094 ~ 75360775 (-)
G1409885 NA non-coding upstream 29369 75348555 ~ 75354573 (-)
G1409886 NA non-coding upstream 31944 75351130 ~ 75358685 (-)
G1409430 LOC106566333 other downstream 468316 74845104 ~ 74847937 (-)
G1409407 NA other downstream 577064 74736433 ~ 74739189 (-)
G1409044 NA other downstream 1120302 74195525 ~ 74195951 (-)
rps21 LOC106572905 other downstream 1133673 74172873 ~ 74182639 (-)
ppdpfb LOC106566296 other downstream 1538896 73769856 ~ 73777432 (-)
G1409847 NA other upstream 49704 75368890 ~ 75369623 (-)
G1409928 NA other upstream 115868 75435054 ~ 75435540 (-)
G1410190 NA other upstream 436592 75755742 ~ 75756479 (-)
G1410213 NA other upstream 544643 75807474 ~ 75864456 (-)
G1410288 NA other upstream 621521 75940707 ~ 75941802 (-)

Expression



Co-expression Network