G1409883 (tfe3)


Basic Information

Item Value
gene id G1409883
gene name tfe3
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 75341565 ~ 75343084 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1610853
cGTAGCAGTAGGCTGCGGTTGCTGTGCTCCAGTTTCCTCTGTCTGGTCTCCACCTCCTTGGCTCTCTGCTGCTCCTTCTGCAGCCTCCTAATGTAGTCCACAGACGCCTTCAGGATGGTGCCCTTGTTCCAACGCGTCTCCCTGTCTCCGTAGCAGGGGGaCGGGTCACTCGATTTGGGGATGAGAGCTCCCAGTTCCTTGATGCGATCGTTGATGTTGAACCTCCTCCGTCT
>TU1610854
cagtattacctgtataggtagcagtaggttactgtcagtattacctgtataggtagcagtaggttactgtcagtattacctgtataggtagcagtaggttactgtcagtattacctgtatacgtagcagtaggttactgtcagtattacctgtataggtagcagtaggttactgtcagtattacctgtataggtagcagtaggttactgtcagtattacctgtatagatagcagtaggttactgtcagtattacctgtatgcGTAGCAGTAGGCTGCGGTTGCTGTGCTCCAGTTTCCTCTGTCTGGTCTCCACCTCCTTGGCTCTCTGCTGCTCCTTCTGCAGCCTCCTAATGTAGTCCACAGACGCCTTCAGGATGGTGCCCTTGTTCCAACGCGTCTCCCTGTCTCCGTAGCAGGGGGaCGGGTCACTCGATTTGGGGATGAGAGCTCCCAGTTCCTTGATGCGATCGTTGATGTTGAACCTCCTCCGTCT

Function

symbol description
tfe3 Enables sequence-specific double-stranded DNA binding activity. Involved in positive regulation of cell adhesion and positive regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Implicated in renal cell carcinoma.

NR:

description
microphthalmia-associated transcription factor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1610853 False 233 lncRNA 0.58 2 75341565 75342823
TU1610854 True 494 lncRNA 0.48 2 75341565 75343084

Neighbor

gene id symbol gene type direction distance location
LOC110491183 LOC106566345 coding downstream 294592 75029607 ~ 75046973 (-)
irak1 LOC106566344 coding downstream 326186 74986625 ~ 75015379 (-)
LOC110492703 LOC106566343 coding downstream 356730 74922068 ~ 74984835 (-)
LOC118939467 NA coding downstream 435767 74900487 ~ 74905798 (-)
LOC110512152 LOC106566317 coding downstream 584161 74657798 ~ 74757404 (-)
LOC118939468 NA coding upstream 28536 75371620 ~ 75372905 (-)
LOC110492917 LOC106566358 coding upstream 256950 75600034 ~ 75615122 (-)
LOC110492699 tcea2 coding upstream 761125 76104209 ~ 76119590 (-)
LOC110492709 LOC106566328 coding upstream 1218173 76561257 ~ 76642094 (-)
usp21 LOC106566311 coding upstream 1314819 76657903 ~ 76693758 (-)
G1409877 NA non-coding downstream 12251 75328488 ~ 75329314 (-)
G1409850 NA non-coding downstream 20330 75306448 ~ 75321235 (-)
G1409871 NA non-coding downstream 22379 75316253 ~ 75319186 (-)
G1409870 NA non-coding downstream 36464 75304879 ~ 75305101 (-)
G1409869 NA non-coding downstream 38200 75302883 ~ 75303365 (-)
G1409884 NA non-coding upstream 10 75343094 ~ 75360775 (-)
G1409885 NA non-coding upstream 5471 75348555 ~ 75354573 (-)
G1409886 NA non-coding upstream 8046 75351130 ~ 75358685 (-)
G1409889 NA non-coding upstream 12713 75355797 ~ 75363553 (-)
G1409849 NA non-coding upstream 30386 75373470 ~ 75374846 (-)
G1409430 LOC106566333 other downstream 493628 74845104 ~ 74847937 (-)
G1409407 NA other downstream 602376 74736433 ~ 74739189 (-)
G1409044 NA other downstream 1145614 74195525 ~ 74195951 (-)
rps21 LOC106572905 other downstream 1158985 74172873 ~ 74182639 (-)
ppdpfb LOC106566296 other downstream 1564208 73769856 ~ 73777432 (-)
G1409847 NA other upstream 25806 75368890 ~ 75369623 (-)
G1409928 NA other upstream 91970 75435054 ~ 75435540 (-)
G1410190 NA other upstream 412694 75755742 ~ 75756479 (-)
G1410213 NA other upstream 520745 75807474 ~ 75864456 (-)
G1410288 NA other upstream 597623 75940707 ~ 75941802 (-)

Expression


Co-expression Network