G1409849


Basic Information

Item Value
gene id G1409849
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 75373470 ~ 75374846 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1610808
GGTGACAGAAAACAATATGTAAAACTTAAAGACTACATGCAATATGACAATGTTGTTGACGAGGAGTAACATCCCTTTCATGATCCCATTTCTACAGAGAGTGACTTGTGTATCCTGATCTGATCCGATCCGATCTGATGTGTGTATTCTGATGAAGACCAATCATCAACAGTGGCTGGAGGGTTTATGTTTTTTTTTGATAAACATGAAAAACTGATAAACACTTAACTAGTTTTCCTGTGTCTGGTTATTGCTGTACACCTACAGTACAACCAAACACATATAACACATTAAATACAATAACTTGGCTGTGTTTTCACTGGATTTTTTGTTCTGCTTTGAAAAGCAGAAAAATACTtgaacaccttgtagagtcaacatgggccagcatccctgtggaacgctttcaacaccttgtagagtccatgccccgacgaattgaggttgttctgagggcaaaagggggtacaAAGCAATGTtcggaaggtgttcttaatgtttggtatactcagtgtatatctcaGCCAACTCTTCCATAGTTTGCTACTGAGTGTTTGCCAGTAGGATGTGTAGAGAGGGAAGACATAGACTATGTTTCAAATGACTCCCAATTCCTCATAAAGCCTGAAATACAGAACTTGTTTTGTGCCCAAATTAATAAATACGCATGACAAGGAGTGTTAAGGAGAGGAATGTTAGCTCAAAACTGACTGGATTTCTCCAGGCTAAttccccacagggctctggtcaaaagtagggcaatatatagggaatagggtgccatagggctctggtctaaagtagtgcactatatagggaatagggtgcaatagggctctggtctaaagtagtgcactatatagggaatagggtgccatagggctctggtctaaagtagtgcactatatagggaatagggtgccatagggctctggtctaaagtagtgcactatatagggaatagggtgccatagggctctggtcaaaagtagggcacgaTAAAGGGCACTATaaatgggtgccatttgggacgtatccaTGCAGTCATATCCTCACAAAAGAGCTGCAAGACTGTATTGAGCTGGTAGCCAATCACCGAACAGTAAAAGTGACCAGGAACGGACTACTGCTGAATGGCTATTGGCTTCTGCATTGCTCTACCAGAggagatagaaaactgtattttagACTATCAGACATAGAATCTCCTCAGTTGAAATGAGCAACATTTacacatgatacacacacacaccctcagtcaCATATATTTAAAAGAGAA
>TU1610809
GGTGACAGAAAACAATATGTAAAACTTAAAGACTACATGCAATATGACAATGTTGTTGACGAGGAGTAACATCCCTTTCATGATCCCATTTCTACAGAGAGTGTATCCTGATCTGATCTGATGTGTATTCATGATCCCATTTCTACAGAGAGTGACTTGTGTATCCTGATCTGATCCGATCCGATCTGATGTGTGTATTCTGATGAAGACCAATCATCAACAGTGGCTGGAGGGTTTATGTTTTTTTTTGATAAACATGAAAAACTGATAAACACTTAACTAGTTTTCCTGTGTCTGGTTATTGCTGTACACCTACAGTACAACCAAACACATATAACACATTAAATACAATAACTTGGCTGTGTTTTCACTGGATTTTTTGTTCTGCTTTGAAAAGCAGAAAAATACTtgaacaccttgtagagtcaacatgggccagcatccctgtggaacgctttcaacaccttgtagagtccatgccccgacgaattgaggttgttctgagggcaaaagggggtacaAAGCAATGTtcggaaggtgttcttaatgtttggtatactcagtgtatatctcaGCCAACTCTTCCATAGTTTGCTACTGAGTGTTTGCCAGTAGGATGTGTAGAGAGGGAAGACATAGACTATGTTTCAAATGACTCCCAATTCCTCATAAAGCCTGAAATACAGAACTTGTTTTGTGCCCAAATTAATAAATACGCATGACAAGGAGTGTTAAGGAGAGGAATGTTAGCTCAAAACTGACTGGATTTCTCCAGGCTAAttccccacagggctctggtcaaaagtagggcaatataatagggaatagggtgccatagggctctggtctaaagtagtgcactatatagggaatagggtgccatagggctctggtctaaagtagtgcactatatagggaatagggtgccatagggctctggtcaaaagtagggcacgaTAAAGGGCACTATaaatgggtgccatttgggacgtatccaTGCAGTCATATCCTCACAAAAGAGCTGCAAGACTGTATTGAGCTGGTAGCCAATCACCGAACAGTAAAAGTGACCAGGAACGGACTACTGCTGAATGGCTATTGGCTTCTGCATTGCTCTACCAGAggagatagaaaactgtattttagACTATCAGACATAGAATCTCCTCAGTTGAAATGAGCAACATTTacacatgatacacacacacaccctcagtcaCATATATTTAAAAGAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1610808 False 1279 lncRNA 0.42 2 75373470 75374846
TU1610809 True 1237 lncRNA 0.41 3 75373470 75374846

Neighbor

gene id symbol gene type direction distance location
LOC118939468 NA coding downstream 565 75371620 ~ 75372905 (-)
LOC110491183 LOC106566345 coding downstream 326497 75029607 ~ 75046973 (-)
irak1 LOC106566344 coding downstream 358091 74986625 ~ 75015379 (-)
LOC110492703 LOC106566343 coding downstream 388635 74922068 ~ 74984835 (-)
LOC118939467 NA coding downstream 467672 74900487 ~ 74905798 (-)
LOC110492917 LOC106566358 coding upstream 225188 75600034 ~ 75615122 (-)
LOC110492699 tcea2 coding upstream 729363 76104209 ~ 76119590 (-)
LOC110492709 LOC106566328 coding upstream 1186411 76561257 ~ 76642094 (-)
usp21 LOC106566311 coding upstream 1283057 76657903 ~ 76693758 (-)
LOC110514470 uba1 coding upstream 1330943 76705789 ~ 76774764 (-)
G1409889 NA non-coding downstream 9917 75355797 ~ 75363553 (-)
G1409884 NA non-coding downstream 12695 75343094 ~ 75360775 (-)
G1409886 NA non-coding downstream 14785 75351130 ~ 75358685 (-)
G1409885 NA non-coding downstream 18897 75348555 ~ 75354573 (-)
G1409883 tfe3 non-coding downstream 30386 75341565 ~ 75343084 (-)
G1409896 NA non-coding upstream 7226 75382072 ~ 75382800 (-)
G1409897 NA non-coding upstream 8139 75382985 ~ 75383410 (-)
G1409905 NA non-coding upstream 30835 75405681 ~ 75405954 (-)
G1409913 NA non-coding upstream 41941 75416787 ~ 75417057 (-)
G1409915 NA non-coding upstream 44609 75419455 ~ 75419657 (-)
G1409847 NA other downstream 3847 75368890 ~ 75369623 (-)
G1409430 LOC106566333 other downstream 525533 74845104 ~ 74847937 (-)
G1409407 NA other downstream 634281 74736433 ~ 74739189 (-)
G1409044 NA other downstream 1177519 74195525 ~ 74195951 (-)
rps21 LOC106572905 other downstream 1190890 74172873 ~ 74182639 (-)
G1409928 NA other upstream 60208 75435054 ~ 75435540 (-)
G1410190 NA other upstream 380932 75755742 ~ 75756479 (-)
G1410213 NA other upstream 488983 75807474 ~ 75864456 (-)
G1410288 NA other upstream 565861 75940707 ~ 75941802 (-)
G1410456 NA other upstream 686223 76061069 ~ 76061732 (-)

Expression


Co-expression Network