XLOC_033097 (edem1)


Basic Information

Item Value
gene id XLOC_033097
gene name edem1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42932757 ~ 42949184 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064315
GAAAGAAGAGCTGTGGACTTTTGCGCTTCGTTAAGTCGCAGCGGCTAAGTGAATTATGACTTTGAAGGCCGACAGCAGGCAAAGATGCAATGGAGGTCAATAGTCGTGGGTCTCCTTGTTTTAAGAGTGCTGCTCAATTGCGCGGTGTGGCTCGTGTTTGGACTGggacccagctggggctttgaCTTCCCCATTAAATTCACGTTCAACTCGCATAAAATTGAACTTTTCAATGATGGCGAAAGAGCCACCGTGAAAACTAACGCCTGGTTGCGGCACCTTTATGACAGCAGAAACCCTCAAGCGAAGACCTGCTCCAAGATCAGCGGGAATTCGCCAAAGAAGTCCTACCTCAGTTTCTTTGAGGAGGGCAGAGATGAGTATGACAGAAAGTACAGCTCTTTCCCGGACGCCCTTAAAGTCAAGATGAGGGCCATGGCGCGGGACATGTTTTATTTCGGATATGATAACTACATGAAGTTTGCCTTTCCAGAGGATGAACTGAACCCTATAGCATGTGAAGGTCGAGGGCCTGATGTGCTCAATCCGTCAAATATCAACATTAATGATGTTCTTGGAAACTACTCTTTAACTCTCATCGATACTCTTGATACACTGTTGGTTCTCGGAAATGTGACCGAATTTCATCGAGCTGTTAAATTGGTGATTGATACAGTATCTTTTGACAAGGACTCCACTGTTCAAGTCTTTGAGGCCAACATCAGAATCCTTGGCAGTTTGATCTCAGCCCACATTCTGCTGACTGACCCACGGCACCCGTTTGGAGATGTAGGACTGAAAGACTATGACAATGAGCTGCTACACCTGGCACATGATCTTGCCGTTCGACTACTACCTGCTTTCGAGAACACTAGCACAGGCATCCCTTATCCAAGGGTGAATTTAAAGAATGGTGTTCCTCCTGACAGCATTAATGAGACTTGTACGGCAGGGGCAGGCTCTCTGCTCGTGGAGTTTGGTATTCTTAGCCGTCTGATTGGTGACTCTACATTTGAATGGGTCGCCCGGCGGGCTGTTAAAGCTCTGTGGAAATTAAGAAGTAATGAAACTGGACTATTggGGAATGTGGTTAATATTCAGACTGGCCAGTGGGTGGGCAAGCAGAGCGGTCTGGGCGCCGGCATGGACTCATTTTATGAGTACCTCCTCAAGTCTTACATCTTGTTTGGAGAGAAAGAAGACTTTAGGATGTTCACTGCAGCCTATGAGAGCATTCAGAGCCACCTGAGAAGAGGAAGAGAGGCGTGTAATGAAGGAGAAGGTGACCCACCACTCTATGTGAATGTGAACATGTTCAACGGACAGATCATGAACACATGGATTGACTCTCTGCAGGCATTCTTCCCTGGACTACAGGTTTTAAACGGAGATGTTGAAAATGCCATTTGCCTTCATGCCTTCTACTATGCAATCTGGAAGCGTTTCGGTGCTCTTCCTGAGAGGTACAACTGGCAGCTTCAGGCCCCAGATGTCCTTTTCTACCCCTTAAGACCTGAACTAGTGGAGTCCACATACCTGCTCTATCAGGCAACCAAGAATCCATTTTATCTTCATGTTGGGATGGACATTCTTGAAAGCCTTGAAAAAAATACCAAAGTGAGgTGTGGTTACGCTACTCTTCATCATGTAGTGGATAAATCCAAAGAAGATCGCATGGAGAGTTTCTTCCTCAGTGAAACCTGCAAATACCTTTACTTGCTCTTTGATGAAGACAACCCACTGCACAAGTCTGAGAATAAGTACATCTTCACTACAGAAGGCCATGTAGTTCCAATAGATCAGCGTTTCAGGGAGAGAAGTTGGGAAGAGCAGTTCCCAAATGAAGAGGCCAGGAAAGACCCAAGAGCCAACATAAGCAATTGTGACCGGATTCCTGAAGAGAGACGTTATGGTCTTCCACTAAAGAGCATGTACATGAGGCAAATAGACCACATGGTGGGGCTGTCCTGACGTCAGTCCTGCCTCCTGTAGGTCTGACATACACACAAACCCCCTGGAGGTACTCAACAACTCTCCAAACAGAACTTTTTAGTCTCATTTTGCacattgagattttttttttatcaacaaatCAACTAGCAccaattgttcttttttttgttccagtgtgtcttttttgtggcaTGAAAGTGTCACTCTTAAGTTAGATCAGGTATTTGGATTTGGTTACATTTTCGGATCCAGCCAGCAAACATCCACAGCATAAAGCAAACTTGTTCAGGGCAGTTCGGCTGTTCAGAATTGTAacaacagttattattattattttttttattcttgggCTGATTTCTATATTGTGCAATCGAGTGTGTTTACACACCCAGTGTTACACGGTTTCTTCAGTGCCATGTTTAATGAAACTTGATCTAGTATTACAAAAGGGCTCTGTTGGGTGAACGAATAGTAtgtttgcatgtttcagatgttcTTCTCAAGGAACAAGCTCTTAAATAAGCTCATGATGACAGCTGAATCATTATACGCCTTTCAGAAACACGCACAACAGAGGGGCTACATTTTCTGCAAATCTCAAAAATCATCAAATCCACACGTTCTTtatcttttcatattttgtgcCTTGGTTTGAAAGATGTACAACACTTATATTTTTGCATGATTCAACATTTCCGATTGCactgatttcattttttttgctATCAGTGCATTGAGATAAATGAAAAGGTTTGGTTATGTAGCATACATGTTTGGTATGTTTTGATCCAAATTAACATTGAAAACTGTATTTAATTAAGTGCGTTTTCCACAGCAGCTCAAACAAGTGTTGCaattttcctctctctctctctctgttaggTCTGGACATTTATACTAACAATAAATCCTTAAACAATATGAAGTTTGTTGGaccaaatattacatttaacaaaaaaagtgccttattcatattttcattttccttcagcgcTCAGGATTAATAGTATGCCATAATGCAGTCACTCTGAGGTGATGTGCATGTAATGTGTACGTTTCTTAActcttttgtttttatgcatatgTGTTGTTAGTGCAAATGTTTTCTGAACAAAAGTTGACAATAAGGGATGATCAATATGCTGGTAAGAGAAGAATTCATTTTGTTGGTGTTATAGATCATGATTTATTTCGGGCACATAGGGAGGATACTGTCAGTAATTACTTAGGGGGTTGTATTTATTCAGATTGTTTTTTATTAGATGCAGGTATTCTAATTCAAATTGTTTCATGTTGATCTGCttgattttattgttatttaacctTTAGTCCAAATGGAGACGGAGGTTGATGTCTACACTGCATTTtatcaaatgaaagaaaaataataataaaaacgttACTTAAAAAAA
>TCONS_00064316
GTTTCTTTGAGGAGGGCAGAGATGAGTATGACAGAAAGTACAGCTCTTTCCCGGACGCCCTTAAAGTCAAGATGAGGGCCATGGCGCGGGACATGTTTTATTTCGGATATGATAACTACATGAAGTTTGCCTTTCCAGAGGATGAACTGAACCCTATAGCATGTGAAGGTCGAGGGCCTGATGTGCTCAATCCGTCAAATATCAACATTAATGATGTTCTTGGAAACTACTCTTTAACTCTCATCGATACTCTTGATACACTGTTGGTTCTCGGAAATGTGACCGAATTTCATCGAGCTGTTAAATTGGTGATTGATACAGTATCTTTTGACAAGGACTCCACTGTTCAAGTCTTTGAGGCCAACATCAGAATCCTTGGCAGTTTGATCTCAGCCCACATTCTGCTGACTGACCCACGGCACCCGTTTGGAGATGTAGGACTGAAAGACTATGACAATGAGCTGCTACACCTGGCACATGATCTTGCCGTTCGACTACTACCTGCTTTCGAGAACACTAGCACAGGCATCCCTTATCCAAGGGTCAGGCCCGCTTGCATCCTTTTTTATAGTGAGACGATGGCTCTTATTTCCTCTATTTGATATTTTCTTTCTACCCTGTTTTTATGCAGGTGAATTTAAAGAATGGTGTTCCTCCTGACAGCATTAATGAGACTTGTACGGCAGGGGCAGGCTCTCTGCTCGTGGAGTTTGGTATTCTTAGCCGTCTGATTGGTGACTCTACATTTGAATGGGTCGCCCGGCGGGCTGTTAAAGCTCTGTGGAAATTAAGAAGTAATGAAACTGGACTATTggGGAATGTGGTTAATATTCAGACTGGCCAGTGGGTGGGCAAGCAGAGCGGTCTGGGCGCCGGCATGGACTCATTTTATGAGTACCTCCTCAAGTCTTACATCTTGTTTGG

Function

symbol description
edem1 Predicted to enable calcium ion binding activity; hydrolase activity, hydrolyzing O-glycosyl compounds; and lytic transglycosylase activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Is expressed in anterior axial hypoblast; hatching gland; liver; pharyngeal arch; and polster. Orthologous to human EDEM1 (ER degradation enhancing alpha-mannosidase like protein 1).

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-040426-808 Predicted to enable calcium ion binding activity; hydrolase activity, hydrolyzing O-glycosyl compounds; and lytic transglycosylase activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Is expressed in anterior axial hypoblast; hatching gland; liver; pharyngeal arch; and polster. Orthologous to human EDEM1 (ER degradation enhancing alpha-mannosidase like protein 1).

Ensembl:

ensembl_id ENSDARG00000025094

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064315 False 3365 mRNA 0.41 12 42932757 42949184
TCONS_00064316 True 924 lncRNA 0.46 5 42942705 42948829

Neighbor

gene id symbol gene type direction distance location
XLOC_033096 ip6k2a coding downstream 514532 42409082 ~ 42418225 (-)
XLOC_033095 sec61a1l coding downstream 544149 42377911 ~ 42388608 (-)
XLOC_033094 emc3 coding downstream 555450 42369999 ~ 42377307 (-)
XLOC_033093 usp4 coding downstream 563571 42345005 ~ 42369186 (-)
XLOC_033092 fancd2 coding downstream 595762 42291308 ~ 42336995 (-)
XLOC_033098 arl8ba coding upstream 2776 42951960 ~ 42971184 (-)
XLOC_033099 tnfrsf18 coding upstream 26094 42975278 ~ 42983843 (-)
XLOC_033100 si:ch73-361p23.3 coding upstream 52780 43001964 ~ 43007264 (-)
XLOC_033101 glyctk coding upstream 70458 43019642 ~ 43051893 (-)
XLOC_033102 NA coding upstream 108278 43057462 ~ 43072882 (-)
XLOC_033085 NA non-coding downstream 1479869 41451670 ~ 41452888 (-)
XLOC_033077 NA non-coding downstream 1964416 40963686 ~ 40968341 (-)
XLOC_033076 CR293534.1 non-coding downstream 1986282 40946357 ~ 40946475 (-)
XLOC_033074 NA non-coding downstream 2068679 40856139 ~ 40864078 (-)
XLOC_033070 CR450814.1 non-coding downstream 2112991 40795898 ~ 40819766 (-)
XLOC_033106 BX927362.1 non-coding upstream 397745 43346929 ~ 43349086 (-)
XLOC_033111 NA non-coding upstream 1030527 43979711 ~ 44002542 (-)
XLOC_033118 NA non-coding upstream 2974758 45923942 ~ 45929175 (-)
XLOC_033121 BX005101.1 non-coding upstream 3218833 46168017 ~ 46251940 (-)

Expression


Co-expression Network