XLOC_033098 (arl8ba)


Basic Information

Item Value
gene id XLOC_033098
gene name arl8ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 42951960 ~ 42971184 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064317
ggcctgcttaACACACTATCACTATGTGTTGATTTATCTTTGTCACAATGTTTTCTTCATGACATAAAGATCTACAGGATTGACATTTTAAAGTGGACTTTCTGAACCTTTTCGCTGAGACGAGTTGGACTTTCCATGGCCACTTCAAGGTTGCGCAAAAATAACGCAGCTTCGACCTGCTTGAACACGTTAAGTTCGCAAACGTTTCACAGTCATATGACAACGGCCAGTTCCTCCCAAACACTACGATTCTGGTGGTGgtgaaaaacattacaaacagCCGAAAACCACCACAGATCAGTCAAATCTAGCATCACAATGTTGGCACTCATTAACCGTCTCCTGGACTGGTTTAAGTCACTCTTCTGGAAGGAAGAGATGGAGTTAACCCTCGTCGGGCTGCAGTATTCAGGCAAAACGACATTTGTTAACGTAATCGCGtCAGGCCAGTTCAGTGAAGATATGATACCAACCGTTGGGTTCAACATGAGAAAGGTTACAAAAGGCAACGTCACCATCAAGATTTGGGATATAGGAGGTCAGCCGAGGTTCAGGAGCATGTGGGAGCGATACTGTCGTGGAGTGAATGCAATAGTgTATATGGTAGACGCAGCAGACCGGGAGAAGGTTGAAGCTTCCAGAAACGAGCTACACAATCTTTTAGACAAACCACAGTTACAAGGAATCCCTGTGTTGGTGCTCGGCAACAAGAGGGATCTACCCAATGCGTTGGATGAGAAACAGCTTATTGAAAAAATGAACTTGGCTGCTATTCAAGACCGAGAGATATGCTGCTACTCTATTTCCTGCAAAGAGAAGGATAACATTGACATCACACTTCAATGGCTAATCCAGCACTCAAAGTCGAGAAGAAGCTGAAAGCATCTTGAGTTTATCCGCTGCCATGTTACTCTCACACCACATCCAATGCTCACTTTGTGAAACTGTACAGTTCTCCATAACGTGCCCCTCACACTACCCTGCTCGTCTGATCCCTAATCCTCCCGTCCGCATCAGTCATGTCAACGATACATCAGTCGCTAAAAGACGCTAGCCTGCAGAATCAGTTTCTTCAACCTCTTACAGCCTGCTGTCAGATGAACATTATGGATATCCTTTTTTTGCGAAGCCCAGCAGCTCCAGTGGTCTCCATTTGGGGTTTCCagaacaaatttatttaaaaactgagaCAAATCCAAACTTTAATATTgatgttttttctctcctttctCAAGTCTGTCAGGTTTTGCTCATGAGAGCGtgttatattgtttcagttgtTGCTTTTATTTCTTTCCATTTCTCTTCCCCCCCACAAATTGTATCTCCTAATATTAAACATGAGGAGCAATCAGTAAATGAACAGCTTAGCGGAAAAAATCCAGAATGATTTTTACAGAAGTGAGAGTAAGTATATTTTGAGAGGATGAATGTTTTGCTGGTTAAGGTTTTCATTTAGCTCAGTGATGTCTTTGAATGGTGTTCATgagctgagagaaagagagtaaGTTAAAGTGCCTTGTGCAGTGTGTATCTGTCCCTCAAGATAAACAGTATACCGGGTGTGCCTGCCTGGAGCTACGTTGGATAAAGACAGCTTACTTTGACCTGCAAGAACCGAAGGCATGCTTTTTAAGGTAGATTATTGTACTGTTGTCGTTATCAACTCAATATTTGTACAAAAAGAGGCAAATGTTGAAAACCCCACTCTTATCAATGCACTTTTGTAAATACGATGAACCAATAAATAGATTGTCAACATGTAGGAGGAA
>TCONS_00064318
aacattacaaacagCCGAAAACCACCACAGATCAGTCAAATCTAGCATCACAATGTTGGCACTCATTAACCGTCTCCTGGACTGGTTTAAGTCACTCTTCTGGAAGGAAGAGATGGAGTTAACCCTCGTCGGGCTGCAGTATTCAGGCAAAACGACATTTGTTAACGTAATCGCGGCCAGTTCAGTGAAGATATGATACCAACCGTTGGGTTCAACATGAGAAAGGTTACAAAAGGCAACGTCACCATCAAGATTTGGGATATAGGAGGTCAGCCGAGGTTCAGGAGCATGTGGGAGCGATACTGTCGTGGAGTGAATGCAATAGTgTATATGGTAGACGCAGCAGACCGGGAGAAGGTTGAAGCTTCCAGAAACGAGCTACACAATCTTTTAGACAAACCACAGTTACAAGGAATCCCTGTGTTGGTGCTCGGCAACAAGAGGGATCTACCCAATGCGTTGGATGAGAAACAGCTTATTGAAAAAATGAACTTGGCTGCTATTCAAGACCGAGAGATATGCTGCTACTCTATTTCCTGCAAAGAGAAGGATAACATTGACATCACACTTCAATGGCTAATCCAGCACTCAAAGTCGAGAAGAAGCTGAAAGCATCTTGAGTTTATCCGCTGCCATGTTACTCTCACACCACATCCAATGCTCACTTTGTGAAACTGTACAGTTCTCCATAACGTGCCCCTCA

Function

symbol description
arl8ba Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in autophagosome-lysosome fusion; late endosome to lysosome transport; and lysosome localization. Predicted to act upstream of or within cell division; chromosome segregation; and protein transport. Predicted to be located in lysosome. Predicted to be active in lysosomal membrane. Orthologous to human ARL8B (ADP ribosylation factor like GTPase 8B).

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0007059 chromosome segregation biological_process
GO:0051301 cell division biological_process
GO:0005764 lysosome cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0005768 endosome cellular_component
GO:0005774 vacuolar membrane cellular_component
GO:0005819 spindle cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9370 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in autophagosome-lysosome fusion; late endosome to lysosome transport; and lysosome localization. Predicted to act upstream of or within cell division; chromosome segregation; and protein transport. Predicted to be located in lysosome. Predicted to be active in lysosomal membrane. Orthologous to human ARL8B (ADP ribosylation factor like GTPase 8B).

Ensembl:

ensembl_id ENSDARG00000006915

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064317 False 1772 mRNA 0.42 7 42951960 42971184
TCONS_00064318 True 703 nonsense_mediated_decay 0.45 7 42952759 42970918

Neighbor

gene id symbol gene type direction distance location
XLOC_033097 edem1 coding downstream 2776 42932757 ~ 42949184 (-)
XLOC_033096 ip6k2a coding downstream 533735 42409082 ~ 42418225 (-)
XLOC_033095 sec61a1l coding downstream 563352 42377911 ~ 42388608 (-)
XLOC_033094 emc3 coding downstream 574653 42369999 ~ 42377307 (-)
XLOC_033093 usp4 coding downstream 582774 42345005 ~ 42369186 (-)
XLOC_033099 tnfrsf18 coding upstream 4094 42975278 ~ 42983843 (-)
XLOC_033100 si:ch73-361p23.3 coding upstream 30780 43001964 ~ 43007264 (-)
XLOC_033101 glyctk coding upstream 48458 43019642 ~ 43051893 (-)
XLOC_033102 NA coding upstream 86278 43057462 ~ 43072882 (-)
XLOC_033103 lrrn1 coding upstream 105332 43076516 ~ 43092175 (-)
XLOC_033085 NA non-coding downstream 1499072 41451670 ~ 41452888 (-)
XLOC_033077 NA non-coding downstream 1983619 40963686 ~ 40968341 (-)
XLOC_033076 CR293534.1 non-coding downstream 2005485 40946357 ~ 40946475 (-)
XLOC_033074 NA non-coding downstream 2087882 40856139 ~ 40864078 (-)
XLOC_033070 CR450814.1 non-coding downstream 2132194 40795898 ~ 40819766 (-)
XLOC_033106 BX927362.1 non-coding upstream 375745 43346929 ~ 43349086 (-)
XLOC_033111 NA non-coding upstream 1008527 43979711 ~ 44002542 (-)
XLOC_033118 NA non-coding upstream 2952758 45923942 ~ 45929175 (-)
XLOC_033121 BX005101.1 non-coding upstream 3196833 46168017 ~ 46251940 (-)

Expression


Co-expression Network