Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_033099 |
| gene name | tnfrsf18 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 42975278 ~ 42983843 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| tnfrsf18 | Predicted to enable tumor necrosis factor-activated receptor activity. Predicted to be involved in positive regulation of cell adhesion. Predicted to act upstream of or within negative regulation of apoptotic process. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Predicted to be active in external side of plasma membrane. Is expressed in gut; kidney; spleen; and thymus. Orthologous to human TNFRSF18 (TNF receptor superfamily member 18). |
| id | name | namespace |
|---|---|---|
| GO:0045785 | positive regulation of cell adhesion | biological_process |
| GO:0043066 | negative regulation of apoptotic process | biological_process |
| GO:0009897 | external side of plasma membrane | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005031 | tumor necrosis factor-activated receptor activity | molecular_function |
| id | description |
|---|---|
| ko04060 | Cytokine-cytokine receptor interaction |
| ko04050 | Cytokine receptors |
| ko04090 | CD molecules |
| id | description |
|---|---|
| ZDB-GENE-101104-7 | Predicted to enable tumor necrosis factor-activated receptor activity. Predicted to be involved in positive regulation of cell adhesion. Predicted to act upstream of or within negative regulation of apoptotic process. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Predicted to be active in external side of plasma membrane. Is expressed in gut; kidney; spleen; and thymus. Orthologous to human TNFRSF18 (TNF receptor superfamily member 18). |
| ensembl_id | ENSDARG00000076800 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00064319 | True | 1540 | mRNA | 0.39 | 6 | 42975278 | 42983843 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_033098 | arl8ba | coding | downstream | 4094 | 42951960 ~ 42971184 (-) |
| XLOC_033097 | edem1 | coding | downstream | 26094 | 42932757 ~ 42949184 (-) |
| XLOC_033096 | ip6k2a | coding | downstream | 557053 | 42409082 ~ 42418225 (-) |
| XLOC_033095 | sec61a1l | coding | downstream | 586670 | 42377911 ~ 42388608 (-) |
| XLOC_033094 | emc3 | coding | downstream | 597971 | 42369999 ~ 42377307 (-) |
| XLOC_033100 | si:ch73-361p23.3 | coding | upstream | 18121 | 43001964 ~ 43007264 (-) |
| XLOC_033101 | glyctk | coding | upstream | 35799 | 43019642 ~ 43051893 (-) |
| XLOC_033102 | NA | coding | upstream | 73619 | 43057462 ~ 43072882 (-) |
| XLOC_033103 | lrrn1 | coding | upstream | 92673 | 43076516 ~ 43092175 (-) |
| XLOC_033104 | si:dkey-178o16.4 | coding | upstream | 235008 | 43218851 ~ 43221581 (-) |
| XLOC_033085 | NA | non-coding | downstream | 1522390 | 41451670 ~ 41452888 (-) |
| XLOC_033077 | NA | non-coding | downstream | 2006937 | 40963686 ~ 40968341 (-) |
| XLOC_033076 | CR293534.1 | non-coding | downstream | 2028803 | 40946357 ~ 40946475 (-) |
| XLOC_033074 | NA | non-coding | downstream | 2111200 | 40856139 ~ 40864078 (-) |
| XLOC_033070 | CR450814.1 | non-coding | downstream | 2155512 | 40795898 ~ 40819766 (-) |
| XLOC_033106 | BX927362.1 | non-coding | upstream | 363086 | 43346929 ~ 43349086 (-) |
| XLOC_033111 | NA | non-coding | upstream | 995868 | 43979711 ~ 44002542 (-) |
| XLOC_033118 | NA | non-coding | upstream | 2940099 | 45923942 ~ 45929175 (-) |
| XLOC_033121 | BX005101.1 | non-coding | upstream | 3184174 | 46168017 ~ 46251940 (-) |
