XLOC_033100 (si:ch73-361p23.3)


Basic Information

Item Value
gene id XLOC_033100
gene name si:ch73-361p23.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 43001964 ~ 43007264 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064320
ATCTTCTAATAAAAGGTCTTTAACGTCACAGTTGATATGATACTCAAGAAAAACATACTTTTCCATAACTGCATGTTTTCGTTCCACAAAGAGACTGTGGGTGCGTCGGAAACAAAGCGGGGTGAGGTTTGACGGGTGCTCATGCATGCTGGGGGTAAATGTCAACCTCTGTTTCCTCTCATTTGAGAGTTTCGCACAGAACCAGCACTATACTACAGGGCTACCGCTGTCATGTTTTGTGACATGAAAGTCCTCTCCATTCTTCTATATTTGCTGTTACTTCATAGAATTGGAAGCGCTACAGGAGAGTGTCTAGCAGGTCAGAAGGTAAACTACAGCACAGGTAAATGTGAGAACTGTCCAAAGGGTCAATACAGCCCTAAAAGTGGAAACAGTGTTCACTGTTACAACTGCAGCAAATGCAAAAAAGGCAGTAATGTAATCAATGAGTGTACACTTACCAGCGACACTCAGTGCAGATGTATGAAAGGTTTTACACCTGTCGATACACTAAAAGAAGAGGTTTGTGTCTGTAAAAAGGGTTCTGGAGTGAATAAGAAAGGAAATGAATGCCAAACATGTAGCCAAGGATTCTTTACAGATAAAGATGACACAGCTTGTCAAAGATGGAAGGAGTGTAAAAATGGGGTTAATATCTCAGGCACCACTACTTCAGATGTTGTCTGCAATAACATAAAGACAGAGGAGATAAAAGCTCCTACAATCTTGATTCCCTTGTTCCGGACAGCCAAACCCACTTTTGCAGCCACTTTAGGAACTCAGACCACTTCAGGAACTACGACCACTTCAGAGACTAAGACCACATCAGGAACTACGACCTACTCTCCCGGAGAAAAAGCAGACAGCTTCTACATCTTCTGGCTGATTATAATTTGTGCTACTACTACTCTTCTCCTTGCTGGATTCTTGTACGGCAAGAGATTCACCCACTGCGTTCATAACCTCAAGAAAGCAAACTCTCGAAAAGAAAGCACATGCAGAAAGCCTGTTGAAGAATCTGGGGAAAAGTGCCTGTCTTTACTTGTCTAACAGGTTAATTGGCCTTAGTGTTTCTTTTTGGGGAATATTTTGTATGCAAGAAATAGTAGTTGTTATATAACTAGTCAAGCTGCTGTtcaaaaccatttaaaacataaaaccaaTGTTTAATTGTCATTTTCTGAAACCTGCGTACATAAGGGGATGTTTAGGATCTCATTTACACCTCCTTTTTATGACATGAATTTAAACATTCATGTAATTTATCTACATGAAAAGGTGGTTTGCACTTTGGATCGCATTGCACTTGTAGTGTAAATGCTCATTCATTTGAATTCAGGCGGCTTATTTATTTCAAGCCGTGAATTGATTTCATTACTTTGAAATCCGCTGATTAGTGAATTCAAATCTCTACCTTGGCAGAATGCGCACTGCAGTTGACCGCTGTCTGTGGGTTGACTGGTGGATGTCATTTCTATGCCACCACAGTTGTTTGCCTCAGTCGTTCTTGTAGTGACTCATTCACTCCTAAGAGATATTTGATAAACTCCTATATCTAGATGATGTACACAGGGTTCCCACGGGTCAGGGGATTTCTGCAATATCATGGAATTCTAAAAAGTCTGTTCCAGATATGGAATGTCTGGGAATTTTTAggaatggaaagataatacatttaaatccaAATGCTTTATTGCAAAcacaataacaaaaa
>TCONS_00064321
gtgaacagcacttttttgaatataccgGCAGTAATGTAATCAATGAGTGTACACTTACCAGCGACACTCAGTGCAGATGTATGAAAGGTTTTACACCTGTCGATACACTAAAAGAAGAGGTTTGTGTCTGTAAAAAGGGTTCTGGAGTGAATAAGAAAGGAAATGAATGCCAAACATGTAGCCAAGGATTCTTTACAGATAAAGATGACACAGCTTGTCAAAGATGGAAGGAGTGTAAAAATGGGGTTAATATCTCAGGCACCACTACTTCAGATGTTGTCTGCAATAACATAAAGACAGAGGAGATAAAAGCTCCTACAATCTTGATTCCCTTGTTCCGGACAGCCAAACCCACTTTTGCAGCCACTTTAGGAACTCAGACCACTTCAGGAACTACGACCACTTCAGAGACTAAGACCACATCAGGAACTACGACCTACTCTCCCGGAGAAAAAGCAGACAGCTTCTACATCTTCTGGCTGATTATAATTTGTGCTACTACTACTCTTCTCCTTGCTGGATTCTTGTACGGCAAGA

Function

symbol description
si:ch73-361p23.3 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TNFRSF9 (TNF receptor superfamily member 9).

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-906 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TNFRSF9 (TNF receptor superfamily member 9).

Ensembl:

ensembl_id ENSDARG00000087225

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064320 False 1714 mRNA 0.40 7 43001964 43007264
TCONS_00064321 True 537 mRNA 0.42 5 43002828 43005901

Neighbor

gene id symbol gene type direction distance location
XLOC_033099 tnfrsf18 coding downstream 18121 42975278 ~ 42983843 (-)
XLOC_033098 arl8ba coding downstream 30780 42951960 ~ 42971184 (-)
XLOC_033097 edem1 coding downstream 52780 42932757 ~ 42949184 (-)
XLOC_033096 ip6k2a coding downstream 583739 42409082 ~ 42418225 (-)
XLOC_033095 sec61a1l coding downstream 613356 42377911 ~ 42388608 (-)
XLOC_033101 glyctk coding upstream 12378 43019642 ~ 43051893 (-)
XLOC_033102 NA coding upstream 50198 43057462 ~ 43072882 (-)
XLOC_033103 lrrn1 coding upstream 69252 43076516 ~ 43092175 (-)
XLOC_033104 si:dkey-178o16.4 coding upstream 211587 43218851 ~ 43221581 (-)
XLOC_033105 frmd4ba coding upstream 212927 43220191 ~ 43387920 (-)
XLOC_033085 NA non-coding downstream 1549076 41451670 ~ 41452888 (-)
XLOC_033077 NA non-coding downstream 2033623 40963686 ~ 40968341 (-)
XLOC_033076 CR293534.1 non-coding downstream 2055489 40946357 ~ 40946475 (-)
XLOC_033074 NA non-coding downstream 2137886 40856139 ~ 40864078 (-)
XLOC_033070 CR450814.1 non-coding downstream 2182198 40795898 ~ 40819766 (-)
XLOC_033106 BX927362.1 non-coding upstream 339665 43346929 ~ 43349086 (-)
XLOC_033111 NA non-coding upstream 972447 43979711 ~ 44002542 (-)
XLOC_033118 NA non-coding upstream 2916678 45923942 ~ 45929175 (-)
XLOC_033121 BX005101.1 non-coding upstream 3160753 46168017 ~ 46251940 (-)

Expression


Co-expression Network