XLOC_033101 (glyctk)


Basic Information

Item Value
gene id XLOC_033101
gene name glyctk
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 43019642 ~ 43051893 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064322
CTGTAATGTGAGGGAGATGGAGCTCTTCTATCTTAATTAACAGTAAGTGAATGTGTGTTTTACAGGGGGTGAATGCAGTTGTCTTTACCTGTGTTACAGCACATGCTTCAGAGGAGGGAAGTTTTGCAGTCTCAGCATCCCCCAACATCACTGTGTGAAGTGATTCTCTTCATCTGATGTGGACAGTCTGATTGGTTTATGGCTCTGATTATTGCTCTCTCGCGTTCTCTTCACCTGCAGCACAAACTGCGGGTGGGTTTAGCATCAGTTTCCGCTCGCAGTATGTCATCATTAAACACACGAGCCCGGGCTGTGTTTTCTGCAGCAGTTGAAGGTGTGCATCCTGACATGGTGGTCCGCAGGGGTCTGGAGAGACATGGTGACAAACTCCATGTTGGTGGACAGAGCTTCACACTTACCAATAACCTGTATCTGGTGGGCTTTGGTAAGGCTGTGCTTGGGATGGCAGCAGAAGCAGAGAGGATTGTCGGGGACCATCTAATAAAAGGGGTGGTCAGTGTGCCACATGGTATCCAAAATACACTGCGCAGTCATGGCAAAGAGAAAATGCTGCTTGAGAGTAACAGCAGAATAACAGTCATGGAAGGAGCAAAGCACAATTTACCAGACACAGATGCTCAGAAGTCTGCAGAGTGCATTCGGGATCTGGCCAGCAGTCTGACTGAGAAAGATCTGCTGCTTGTGCTCATTTCAGGTGGTGGTTCTGCTCTCTTGCCAGCTCCAGCTCCACCCATGTCCTTGCAGGAGAAACAGGATGTGACCCGAAAACTCGCCGCAGCAGGGGCTACAATTCAGGAGTTAAACACAGTGAGGCGAGCTCTGTCATTGTTAAAGGGTGGAGGCCTTGCCCAGTGTGCCAGCCCAGCCAAGGTGGTGGCTTTGGTTCTGTCAGATGTTATTGGAGATCCTCTGGATTTGATAGCCAGTGGCCCAACAGTCAGGAGTGACTCCTCACCAGAGGAGGTCTGGGCTATCTTGGATAATTATAAACTCTCTGACTCTCTTCCGTCCTCTGTAAAAGAGGTGCTTAGTAAATCTATGTCCGGCCAGGGGTCGCGGGTTAAGAACCAGCCACAAGAAGTTAAAGacaatgttttaaatgttgtaaTTGGCTCAAACACTATTGCACTTGAATGTGCAAGCCGCAAGGCCAGTGAATTAGGACTTAGACCAGTCATTCTGTCTCCAGGAGTATGTGGTGATGTTCGCTCTGTTGCTCGACTATATGGGTTGCTTTCGAGTTTTGCATGCTCCCCAGGAAAGGAACCTCCTCCAGAACTTGCTGCAGAGATACTTAAGCTAGGGCCAGAGGTCGGGATAGAAAGCTGGGACTTGTGTCGCACCATGAATGTACTCGTGGGGGAGAGGAAAGAAGGCTGGGGTGCGACCTGTCTGCTTGCAGGAGGAGAACCCACAGTGAAACTGAGTGGAAAAGGCAGGGGAGGAAGGAACCAGGAGCTGGCCATGCGGGTGGGGCTTGAGCTCAGCCAAGGAGAAGTGAAGAGTGGTGCAGTGTTTCTCAGTGGAGGAACCGATGGACAGGACGGCCCGACTGAGGCAGCTGGGGCCGTCGCTGATGGGGAACTGAAAGAAGAGGCTGCGTCTCAAGGGCTGGACACTGACAGCTTTCTCGCCAACAATGATTCATTCACCTTCTTTTCAAAGCTTTCTGAAGGACGACGGTTACTCAACCCTGGACTGACAGGGACCAATGTGATGGATGTCCATGTTATGCTGCTGCCACCATCACCCCAAAAAGACCTCCAGTAGTTTGACACTAGGTTGATTTATTTGAAAGCAACACAAATTTGGGGGTAATAAATGATTTTTCTGCTCTAACATAGTCTGCCAGAAGTGCACTTTTGTAAGATttggaataatttttttatatatattatatttatattatataaatatacatatataaatatatataaatatatatatatatatata
>TCONS_00064323
GTTATGAATGTGTAAAAGCATGACACGACTCATACACAAATTAAAGTGACGTCAAGACGCGTCCTATCCAAAGTTCTGCGATATTAGTCTTGTTTTGTTTACTATAGCTGCGGTAGCCTGAGGTTGAGTGTGGAGAGAAAATGGAgGTGTGAAGTGATTCTCTTCATCTGATGTGGACAGTCTGATTGGTTTATGGCTCTGATTATTGCTCTCTCGCGTTCTCTTCACCTGCAGCACAAACTGCGGGTGGGTTTAGCATCAGTTTCCGCTCGCAGTATGTCATCATTAAACACACGAGCCCGGGCTGTGTTTTCTGCAGCAGTTGAAGGTGTGCATCCTGACATGGTGGTCCGCAGGGGTCTGGAGAGACATGGTGACAAACTCCATGTTGGTGGACAGAGCTTCACACTTACCAATAACCTGTATCTGGTGGGCTTTGGTAAGGCTGTGCTTGGGATGGCAGCAGAAGCAGAGAGGATTGTCGGGGACCATCTAATAAAAGGGGTGGTCAGTGTGCCACATGGTATCCAAAATACACTGCGCAGTCATGGCAAAGAGAAAATGCTGCTTGAGAGTAACAGCAGAATAACAGTCATGGAAGGAGCAAAGCACAATTTACCAGACACAGATGCTCAGAAGTCTGCAGAGTGCATTCGGGATCTGGCCAGCAGTCTGACTGAGAAAGATCTGCTGCTTGTGCTCATTTCAGGTGGTGGTTCTGCTCTCTTGCCAGCTCCAGCTCCACCCATGTCCTTGCAGGAGAAACAGGATGTGACCCGAAAACTCGCCGCAGCAGGGGCTACAATTCAGGAGTTAAACACAGTGAGGCGAGCTCTGTCATTGTTAAAGGGTGGAGGCCTTGCCCAGTGTGCCAGCCCAGCCAAGGTGGTGGCTTTGGTTCTGTCAGATGTTATTGGAGATCCTCTGGATTTGATAGCCAGTGGCCCAACAGTCAGGAGTGACTCCTCACCAGAGGAGGTCTGGGCTATCTTGGATAATTATAAACTCTCTGACTCTCTTCCGTCCTCTGTAAAAGAGGTGCTTAGTAAATCTATGTCCGGCCAGGGGTCGCGGGTTAAGAACCAGCCACAAGAAGTTAAAGacaatgttttaaatgttgtaaTTGGCTCAAACACTATTGCACTTGAATGTGCAAGCCGCAAGGCCAGTGAATTAGGACTTAGACCAGTCATTCTGTCTCCAGGAGTATGTGGTGATGTTCGCTCTGTTGCTCGACTATATGGGTTGCTTTCGAGTTTTGCATGCTCCCCAGGAAAGGAACCTCCTCCAGAACTTGCTGCAGAGATACTTAAGCTAGGGCCAGAGGTCGGGATAGAAAGCTGGGACTTGTGTCGCACCATGAATGTACTCGTGGGGGAGAGGAAAGAAGGCTGGGGTGCGACCTGTCTGCTTGCAGGAGGAGAACCCACAGTGAAACTGAGTGGAAAAGGCAGGGGAGGAAGGAACCAGGAGCTGGCCATGCGGGTGGGGCTTGAGCTCAGCCAAGGAGAAGTGAAGAGTGGTGCAGTGTTTCTCAGTGGAGGAACCGATGGACAGGACGGCCCGACTGAGGCAGCTGGGGCCGTCGCTGATGGGGAACTGAAAGAAGAGGCTGCGTCTCAAGGGCTGGACACTGACAGCTTTCTCGCCAACAATGATTCATTCACCTTCTTTTCAAAGCTTTCTGAAGGACGACGGTTACTCAACCCTGGACTGACAGGGACCAATGTGATGGATGTCCATGTTATGCTGCTGCCACCATCACCCCAAAAAGACCTCCAGTAGTTTGACACTAGGTTGATTTATTTGAAAGCAACACAAATTTGGGGGTAATAAATGATTTTTCTGCTCTAA
>TCONS_00064324
AGTTCATAAAAGAGCTTCAGGATTACCAGCAGTGTGCAGGTGTGAAGTGATTCTCTTCATCTGATGTGGACAGTCTGATTGGTTTATGGCTCTGATTATTGCTCTCTCGCGTTCTCTTCACCTGCAGCACAAACTGCGGGTGGGTTTAGCATCAGTTTCCGCTCGCAGTATGTCATCATTAAACACACGAGCCCGGGCTGTGTTTTCTGCAGCAGTTGAAGGTGTGCATCCTGACATGGTGGTCCGCAGGGGTCTGGAGAGACATGGTGACAAACTCCATGTTGGTGGACAGAGCTTCACACTTACCAATAACCTGTATCTGGTGGGCTTTGGTAAGGCTGTGCTTGGGATGGCAGCAGAAGCAGAGAGGATTGTCGGGGACCATCTAATAAAAGGGGTGGTCAGTGTGCCACATGGTATCCAAAATACACTGCGCAGTCATGGCAAAGAGAAAATGCTGCTTGAGAGTAACAGCAGAATAACAGTCATGGAAGGAGCAAAGCACAATTTACCAGACACAGATGCTCAGAAGTCTGCAGAGTGCATTCGGGATCTGGCCAGCAGTCTGACTGAGAAAGATCTGCTGCTTGTGCTCATTTCAGGTGGTGGTTCTGCTCTCTTGCCAGCTCCAGCTCCACCCATGTCCTTGCAGGAGAAACAGGATGTGACCCGAAAACTCGCCGCAGCAGGGGCTACAATTCAGGAGTTAAACACAGTGAGGCGAGCTCTGTCATTGTTAAAGGGTGGAGGCCTTGCCCAGTGTGCCAGCCCAGCCAAGGTGGTGGCTTTGGTTCTGTCAGATGTTATTGGAGATCCTCTGGATTTGATAGCCAGTGGCCCAACAGTCAGGAGTGACTCCTCACCAGAGG
>TCONS_00064325
GCGTTTTGTTTTGAGCTGTTGCCAGATTGATCGAGAGGGGTTTATTCAGTTTGTCACGTGTGAAGTGATTCTCTTCATCTGATGTGGACAGTCTGATTGGTTTATGGCTCTGATTATTGCTCTCTCGCGTTCTCTTCACCTGCAGCACAAACTGCGGGTGGGTTTAGCATCAGTTTCCGCTCGCAGTATGTCATCATTAAACACACGAGCCCGGGCTGTGTTTTCTGCAGCAGTTGAAGGTGTGCATCCTGACATGGTGGTCCGCAGGGGTCTGGAGAGACATGGTGACAAACTCCATGTTGGTGGACAGAGCTTCACACTTACCAATAACCTGTATCTGGTGGGCTTTGGTAAGGCTGTGCTTGGGATGGCAGCAGAAGCAGAGAGGATTGTCGGGGACCATCTAATAAAAGGGGTGGTCAGTGTGCCACATGGTATCCAAAATACACTGCGCAGTCATGGCAAAGAGAAAATGCTGCTTGAGAGTAACAGCAGAATAACAGTCATGGAAGGAGCAAAGCACAATTTACCAGACACAGATGCTCAGAAGTCTGCAGAGTGCATTCGGGATCTGGCCAGCAGTCTGACTGAGAAAGATCTGCTGCTTGTGCTCATTTCAGGTGGTGGTTCTGCTCTCTTGCCAGCTCCAGCTCCACCCATGTCCTTGCAGGAGAAACAGGATGTGACCCGAAAACTCGCCGCAGCAGGGGCTACAATTCAGGAGTTAAACACAGTGAGGCGAGCTCTGTCATTGTTAAAGGGTGGAGGCCTTGCCCAGTGTGCCAGCC
>TCONS_00064326
GAACTGGCAACGGAGTTACACGCAGCTAATCATCATTGAAATATAGCCTCGTGCTGATGCAGCATTTTTTTACTAATTGAAGGCCACTTTGTTTTAAACTTGGACACGCCAGTGTGTGACGCCAAGCGAAGTACTGAGGTGTGAAGTGATTCTCTTCATCTGATGTGGACAGTCTGATTGGTTTATGGCTCTGATTATTGCTCTCTCGCGTTCTCTTCACCTGCAGCACAAACTGCGGGTGGGTTTAGCATCAGTTTCCGCTCGCAGTATGTCATCATTAAACACACGAGCCCGGGCTGTGTTTTCTGCAGCAGTTGAAGGTGTGCATCCTGACATGGTGGTCCGCAGGGGTCTGGAGAGACATGGTGACAAACTCCATGTTGGTGGACAGAGCTTCACACTTACCAATAACCTGTATCTGGTGGGCTTTGGTAAGGCTGTGCTTGGGATGGCAGCAGAAGCAGAGAGGATTGTCGGGGACCATCTAATAAAAGGGGTGGTCAGTGTGCCACATGGTATCCAAAATACACTGCGCAGTCATGGCAAAGAGAAAATGCTGCTTGAGAGTAACAGCAGAATAACAGTCATGGAAGGAGCAAAGCACAATTTACCAGACACAGATGCTCAGAAGTCTGCA
>TCONS_00064753
CTGTAATGTGAGGGAGATGGAGCTCTTCTATCTTAATTAACAGTAAGTGAATGTGTGTTTTACAGGGGGTGAATGCAGTTGTCTTTACCTGTGTTACAGCACATGCTTCAGAGGAGGGAAGTTTTGCAGTCTCAGCATCCCCCAACATCACTGGGTCTCTGATAACAGTAATTATGCTGCCACAGCAGTGTGGACCCCTTTGGAGAAGATGTTGAATTATCACATTTGACTGCATGAAGCTTCCCTAAAAACCTTACACATTCGACCATAGAGGTGGTCAAATCACTGTTCTTCTCTATCTAAATGACTCTGATGTACCATTTAATCACAAAATAGATTGGGGCTATTGCACCAGAAAGTTATGGAAACTACACTGGAAATCTGAGGTGccgtttacacacatttttcataatcaaaaatcagaaagagctttattaccaggtatgttcacacatacagtacaagaaattagtttttatgacagagcttctacagtgcaacagaattacagagacaggacaaaaaacagataataaatatatatttaaaaatagaagtaagtagtgaatgcaaatatacaaattaacaagtgtatgtacaggtatat
>TCONS_00064754
gctaaaacagacttcaactgtatatcaccaCAGAATTGTTAAGCTTTTAATACACTGCAAACTATTTTAGTTGACTGAACTTTAAATCATAAGGCAACTTTctgcactacttttttttttagttgacttaacttttaaTCCAAATAATTTAGTTCAAAAGCgctgtgcagcaagttgccttacaattttaagttttgtcaatgttttttttttttcagataactGTCACAGTCAGACCAGGTTCTTCCCCAATCAGACACCAAGATCAGCATCACCCGAATACCAATGAGTCATGCACCTGAAGATCACCACCGTTATTATCACCTGCACTATAAAGTCCCTTCACACTGTTCACTTGACATCCGGCCTCGTCGCTATAGACAAAAAGGGCAAACCCCTCAGTACACGGGGGTGAATGCAGTTGTCTTTACCTGTGTTACAGCACATGCTTCAGAGGAGGGAAGTTTTGCAGTCTCAGCATCCCCCAACATCACTGTAAGCTATTTTTCTGTGACCTTATCTTGACTTTGACTTGAAACCCAACTCCACCCTTACTCCCAAACAATCctgaatttaaagggatagttcacacaaaaatagaaTCATATCAGTTTTGAATATAAGAATATTCAAGTTAAAATGACTTGGTTAGACATTGCAGATCCATTTCATGTTCTTTATATTTGAACTCAAACACTCCTAGTTAGGTTCTCTGTGGATCCCCGAGCACAGAAGACTGACTATGCTGAAACTGCAAATTACAGTGCAGATTTTAGTGTTTTCCACAAATAAATGATGTTATATGACttcaatatattaaaacaatatatgtAGTGCATAAGTTAACAGCATCTTCATCCTTTACATTCAATAGAGCATTCTGATTCTGCCTAATTTGCTGTATATCTAATTTGCTGATATGCTGAAGAGCAAATTGGATATGTGATTTCAGTGTATTGCAACATAATTAATACACACTCAAATCTGTCATATGAACAGAAAGTCATATAAGACGAC

Function

symbol description
glyctk Predicted to enable glycerate kinase activity. Predicted to be involved in protein phosphorylation. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in D-glyceric aciduria. Orthologous to human GLYCTK (glycerate kinase).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008887 glycerate kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko00030 Pentose phosphate pathway
ko00630 Glyoxylate and dicarboxylate metabolism
ko00680 Methane metabolism
ko00561 Glycerolipid metabolism
ko00260 Glycine, serine and threonine metabolism

ZFIN:

id description
ZDB-GENE-061013-308 Predicted to enable glycerate kinase activity. Predicted to be involved in protein phosphorylation. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in D-glyceric aciduria. Orthologous to human GLYCTK (glycerate kinase).

Ensembl:

ensembl_id ENSDARG00000060120

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064322 False 1977 mRNA 0.48 5 43019642 43047774
TCONS_00064323 False 1854 mRNA 0.50 5 43019759 43028270
TCONS_00064324 False 869 mRNA 0.51 5 43020637 43027828
TCONS_00064325 False 788 mRNA 0.50 4 43023001 43028370
TCONS_00064326 False 637 mRNA 0.48 3 43023332 43028896
TCONS_00064753 False 607 lncRNA 0.37 2 43041950 43047774
TCONS_00064754 True 1017 lncRNA 0.36 2 43047101 43051893

Neighbor

gene id symbol gene type direction distance location
XLOC_033100 si:ch73-361p23.3 coding downstream 12378 43001964 ~ 43007264 (-)
XLOC_033099 tnfrsf18 coding downstream 35799 42975278 ~ 42983843 (-)
XLOC_033098 arl8ba coding downstream 48458 42951960 ~ 42971184 (-)
XLOC_033097 edem1 coding downstream 70458 42932757 ~ 42949184 (-)
XLOC_033096 ip6k2a coding downstream 601417 42409082 ~ 42418225 (-)
XLOC_033102 NA coding upstream 5569 43057462 ~ 43072882 (-)
XLOC_033103 lrrn1 coding upstream 24623 43076516 ~ 43092175 (-)
XLOC_033104 si:dkey-178o16.4 coding upstream 166958 43218851 ~ 43221581 (-)
XLOC_033105 frmd4ba coding upstream 168298 43220191 ~ 43387920 (-)
XLOC_033106 BX927362.1 coding upstream 295036 43346929 ~ 43349086 (-)
XLOC_033085 NA non-coding downstream 1566754 41451670 ~ 41452888 (-)
XLOC_033077 NA non-coding downstream 2051301 40963686 ~ 40968341 (-)
XLOC_033076 CR293534.1 non-coding downstream 2073167 40946357 ~ 40946475 (-)
XLOC_033074 NA non-coding downstream 2155564 40856139 ~ 40864078 (-)
XLOC_033070 CR450814.1 non-coding downstream 2199876 40795898 ~ 40819766 (-)
XLOC_033111 NA non-coding upstream 927818 43979711 ~ 44002542 (-)
XLOC_033118 NA non-coding upstream 2872049 45923942 ~ 45929175 (-)
XLOC_033121 BX005101.1 non-coding upstream 3116124 46168017 ~ 46251940 (-)

Expression


Co-expression Network