XLOC_033102


Basic Information

Item Value
gene id XLOC_033102
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 43057462 ~ 43072882 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064755
ATAAGAAAAAATAGTCAATTTAATCAGTCAAATAACTTAACTATAAAGTTGAGACTATACCTCTTCAATACTGGATCTTCCTGACCAAAGAAACTTTTATGAGCAATTACCAGTTCATGTCATCACAGAGAGAACATTACGTCTGTCTAATGAAGCTCTTTTGCATCTTCAGGGATTTAACCTATACCATTTTCACTGGCCAAGACTGAAAGATTGCAGGAGACTCAATACAGCGAGGCAGGTGAAAGAGACTCGGAGGAATAATTAAGAATCACCCACACGCAGAGCTCAGGATTTGCCAGAGAATTAAAGTGGAGGAGGTTCCTCCTTGGGCTCTTCAGGTGTTCCAATTGGTTCGTGGAGTTTTTACAAGTGTACCAATGAAAAGAGGATGGGGGTCATTTAAGCACTTCATGATGACTCGGACCAGACTGGGGGGGATCCTTGTCTCTCGTCACTGCTCTGTATTTCTGTGTGACACTTGTGTGCCTGTCCTGTTCTCTGGTTtgctttaagagttttttttttgttgagtttTACATCTATTCAGAACATCCATGCAGTGATGTGAAAGTGAAGTATGAGACgtgacttacatttttacacacacatagTTAATTCTCTGTTAATCCATTAGATCAGAAGCAGGTGCTACtctttgtatgttttattttttccagtGAGTGCAGTTTAATAAGGGGTGTGTGACGaagatgttttttgtattttcataTATCTCTAGTTATTCAGAGGTGAGGGAGGCATTAGTTAGCGAGTGTTCAATTTGTTACTTTCTTTGATTTGGCACTGCTTATTTTCCTTCTATCAGTTTTCAATTGATTTGTTTACTGATGTTGCATTTATTgtacacatttgtaaatatactttgggtaattaaatatatatatttttttctttatctttattgtaatttaactgatgattataatttttcctgaagaaaaactgtaggaaatactgtgaaaatgtctttgctaaaCA
>TCONS_00065220
ATTGCATACTGCGCGTTACTGGGCAAGGACAGCACGAGGCATATTTCAAACTGGCGTCAGGACGAAACATGCTAGATTTACAGATTACACATTCATTAATCTCCACTCTGAAAATGCATAAGGGATTTAACCTATACCATTTTCACTGGCCAAGACTGAAAGATTGCAGGAGACTCAATACAGCGAGGCAGGTGAAAGAGACTCGGAGGAATAATTAAGAATCACCCACACGCAGAGCTCAGGATTTGCCAGAGAATTAAAGTGGAGGAGGTTCCTCCTTGGGCTCTTCAGGTGTTCCAATTGGTTCGTGGAGTTTTTACAAGTGTACCAATGAAAAGAGGATGGGGGTCATTTAAGCACTTCATGATGACTCGGACCAGACTGGGGGGGATCCTTGTCTCTCGTCACTGCTCTGTATTTCTGTGTGACACTTGTGTG

Function

GO:

id name namespace
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0003002 regionalization biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0070851 growth factor receptor binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064755 False 1002 lncRNA 0.36 2 43057462 43066469
TCONS_00065220 True 438 lncRNA 0.46 3 43057976 43072882

Neighbor

gene id symbol gene type direction distance location
XLOC_033101 glyctk coding downstream 5569 43019642 ~ 43051893 (-)
XLOC_033100 si:ch73-361p23.3 coding downstream 50198 43001964 ~ 43007264 (-)
XLOC_033099 tnfrsf18 coding downstream 73619 42975278 ~ 42983843 (-)
XLOC_033098 arl8ba coding downstream 86278 42951960 ~ 42971184 (-)
XLOC_033097 edem1 coding downstream 108278 42932757 ~ 42949184 (-)
XLOC_033103 lrrn1 coding upstream 3634 43076516 ~ 43092175 (-)
XLOC_033104 si:dkey-178o16.4 coding upstream 145969 43218851 ~ 43221581 (-)
XLOC_033105 frmd4ba coding upstream 147309 43220191 ~ 43387920 (-)
XLOC_033106 BX927362.1 coding upstream 274047 43346929 ~ 43349086 (-)
XLOC_033107 eevs coding upstream 365192 43438074 ~ 43449013 (-)
XLOC_033085 NA non-coding downstream 1604574 41451670 ~ 41452888 (-)
XLOC_033077 NA non-coding downstream 2089121 40963686 ~ 40968341 (-)
XLOC_033076 CR293534.1 non-coding downstream 2110987 40946357 ~ 40946475 (-)
XLOC_033074 NA non-coding downstream 2193384 40856139 ~ 40864078 (-)
XLOC_033070 CR450814.1 non-coding downstream 2237696 40795898 ~ 40819766 (-)
XLOC_033111 NA non-coding upstream 906829 43979711 ~ 44002542 (-)
XLOC_033118 NA non-coding upstream 2851060 45923942 ~ 45929175 (-)
XLOC_033121 BX005101.1 non-coding upstream 3095135 46168017 ~ 46251940 (-)
XLOC_033122 BX005101.2 non-coding upstream 3155235 46228117 ~ 46228232 (-)

Expression


Co-expression Network