XLOC_033111


Basic Information

Item Value
gene id XLOC_033111
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 43979711 ~ 44002542 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064354
CGTGCGCCGCAACAAGGAACATTTGTGTCGTGGCTGCCGAAATCACGTGCATGTGTGGTAAAAGTCCAAAGATGGCggttaaaacaagtaaaagaaaCAGAAGTTTGGGGTCTATCTTTTCATCTTCGTCGTCATCCAGCGTCGTAGGCGTGATAAGGTAATGCAGTTGCAGGATAAGCAACACCGTTATTCATGCAACATCGCGGGCCATAGGAACAAGCAGAGCAGCCTACTCTATATGAGTTTCCATGTGAGTCATATCCAAAGTAAACTTCTCCGAACCTCGGCCAAGAAGGTCTCATGAGTTGGGAAAGAGGTGGAGACAAAGAGAAGGAAAAGACGAGCTCTGACCTTTGATGGGAATGGATCTTATCATCTCCGGGCGCCGCCTCTCTTGGGAGCCTTTGGGATTTCACAGGCATACCAATCATCTGCTGTCCAACGGAGGGAAGCTTCAGGAGACCATTATGCTTACAATATTGGTGGAGAGTTATGGCTCTACTTTGTATTTAGGCTCTCTGGGttacatttatcttttttatcGCAGTTGCATTTATTCTCCCACGTTGGAGTCAGCCTTTATAGTTTGAAACTCACTTTTATCCTGTTAAGTAACCCACAAATAACCATTTTGGGGTAATTCTCATACAATAGAAGTCTTTGCATTACAACACTCATGCAGATCACATGACAATATATGAATACTAgagtttgcatttattttttattatagtttgaaATGATATCTACTCCCTAAAAGCTGGTTTTGAGCCGCTGCGTTATTGCTTTCCAAGATGAGAGAGGCTACGGGGGTCAATGTGAAATGACATGCAGAACGGCGCACACTCATTGTGAGCTCTGTCGAGGGCCCCTCGATAGATTGTGTGAGGATTTGCAGAAACTTTTGGCAAGGATGATGGCTGTCTGAAATATCAGAACCTAGAAGCAATGCGTTATGCCAACCTGCCAGCTGGCATGCCTGCTTTTGTAGTAACTCTACAGAGTAAAAGTTTCACTGTAATGCCAAGATGGTTGAAAGGggatcaaatataaatattagctTTCTAGAACAATGCAATTCCATTTGATGTCAGAGTGAGCTGATTTTAATTAACAGGCTTACATAGTTTTTGATCAATGCAGTACCACAGCATTGTtctttgtttgatttttcttAATTAATAATGGAGAATActcatttattgtaaaataaatgaagtGTGTGAAAGTC
>TCONS_00065221
GTGCGCCGCAACAAGGAACATTTGTGTCGTGGCTGCCGAAATCACGTGCATGTGTGGTAAAAGTCCAAAGATGGCggttaaaacaagtaaaagaaaCAGAAGTTTGGGGTCTATCTTTTCATCTTCGTCGTCATCCAGCGTCGTAGGCGTGATAAGGCTCTGGATCGGCCTGCTGTGGCTGTATGTCCCGACTGATGCATTTCCAGACAAGCCCAAGGGTTCTCCAGAGAGCCAGGCAGAGAGGGGGGCCTTGTCTCTACCATTACCCACCTTGTTCCCACTCCAGATGGGTCTCTTCTGCAGCATTCCCTCCCTCAAGACCACAGGTTGCAGTCTGAGATGGTGGTTGGAAAATGTAAATGCTGTCTGTATTGGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064354 False 1231 lncRNA 0.42 3 43979711 44002542
TCONS_00065221 True 376 lncRNA 0.51 3 43988556 44002541

Neighbor

gene id symbol gene type direction distance location
XLOC_033110 prok2 coding downstream 56898 43918529 ~ 43922813 (-)
XLOC_033109 foxp1b coding downstream 89249 43602143 ~ 43890462 (-)
XLOC_033108 MDFIC2 coding downstream 480715 43491635 ~ 43498996 (-)
XLOC_033107 eevs coding downstream 530698 43438074 ~ 43449013 (-)
XLOC_033105 frmd4ba coding downstream 591791 43220191 ~ 43387920 (-)
XLOC_033112 rybpb coding upstream 4167 44006709 ~ 44044385 (-)
XLOC_033113 shq1 coding upstream 86647 44089189 ~ 44161262 (-)
XLOC_033114 pdzrn3b coding upstream 240528 44243070 ~ 44402358 (-)
XLOC_033115 cntn3b coding upstream 582233 44584775 ~ 44711942 (-)
XLOC_033116 rbm19 coding upstream 1840651 45843193 ~ 45869164 (-)
XLOC_033106 BX927362.1 non-coding downstream 630625 43346929 ~ 43349086 (-)
XLOC_033102 NA non-coding downstream 906829 43057462 ~ 43072882 (-)
XLOC_033085 NA non-coding downstream 2526823 41451670 ~ 41452888 (-)
XLOC_033077 NA non-coding downstream 3011370 40963686 ~ 40968341 (-)
XLOC_033076 CR293534.1 non-coding downstream 3033236 40946357 ~ 40946475 (-)
XLOC_033118 NA non-coding upstream 1921400 45923942 ~ 45929175 (-)
XLOC_033121 BX005101.1 non-coding upstream 2165475 46168017 ~ 46251940 (-)
XLOC_033122 BX005101.2 non-coding upstream 2225575 46228117 ~ 46228232 (-)
XLOC_033123 CU041346.1 non-coding upstream 2291819 46294361 ~ 46310011 (-)
XLOC_033135 CABZ01055240.1 non-coding upstream 3153760 47156302 ~ 47156416 (-)

Expression


Co-expression Network