XLOC_033116 (rbm19)


Basic Information

Item Value
gene id XLOC_033116
gene name rbm19
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 45843193 ~ 45869164 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064362
GCCATAATCAAGTGTCTTTGGCTACGCGCTTTACGTCACACAGTAAAGATGGCGACGCACTAAAGGGCTCCATGCTTTATTGTTGATAAAACCATACATTGTTATTTTACAGGAGAAACTCTCACTTGGCTCAGAAAAATGTCAAGGTTAATAGTCAAAAATCTCCCGAATGGGATGAAGGAAGATCGCTTCCGTAAGATGTTTGCAGATTTTGGGACACTTACAGATTGTGCACTCAAATTTACCAAGGATGGAAAATTTCGCAAATTTGGATTTGTGGGTTTCAAGACAGAAGAAGATGCACAGAAAGCTTTGAAACATTTCAACAAGAGCTTTGTGGACACATCTAGGGTTACTGTGGAATTGTGCACAGATTTTGGCGATCCAAACAAAGCCAGACCCTGGAGCAAACACACACGCCAGCCTTCATCAAAGAAagatacagaagaaaaaaaaacacatgagcaaggagaaaaagaaaaaaagAAGCCGAAGAAGATTTTAAATGTTCTGGGAGATCTTGAAAAAGATGAGAGCTTCCAGGAGTTTCTGGCAGTGCACCAGAAACGTGGACAGGTTCCCACATGGGCCAATGACACTGTGGAAGCGACTGCTGTTAGACCTGAAATGGAGAAGAAGAAAGAGAAGAAGCAGAAAGCGGCTGTTGAAGATGATTACCTGAACTTTGACTCTGATGAATCGGAGGAATCAAGTGATGACGGCGAGGATGCTGCAGATGAAGAGGACAAACAAgATAACGAGAAGGAGGCCTTGAAGACTGGTCTGTCTGATATGGACTATCTCCGCTCCAAAATGGTGGAGAAATCAGACATGCTGGATGAGAAAGATGACGACAGCAGTGCGAGTGCTGCTGATGAAAATGAGGAAGATGAGGGGAAAGAGGAGGAAGAGTCCATAGTCCAGCACGCAGACAGTGCTTATGAGAGTGGAGAGAAGACAAGCAGCCAGAAAAGCACAAGGCCAGCAATTGAGCCAACCACAGAGTTCACAGTCAAGCTACGAGGTGCTCCATTCAATGTCAAAGAGCAACAAGTGAAAGAGTTTATGATGCCTTTGAAACCCGTTGCCATTCGATTCGCTAAGAACAGTGACGGCCGCAACTCGGGTTACGTGTATGTGGACCTACGATCAGAGGCAGAGGTCGAGAGAGCCCTGCGCCTTGACAAGGACTACATGGGAGGGCGCTACATTGAGGTTTTCAGAGCCAACAACTTTAAAAACGACAGGCGTTCTGCAAAAAGAAGCGAGATGGAAAAGAATTTTGTGCGCGAGCTGAAGGACGACGAGGAAGAGGAGGATGTTGCAGAATCTGGACGACTTTTCATTAGAAACATGCCCTACACGTGCACTGAGGAGGATCTGAAAGAAGTATTTAGCAAACACGGTCCTCTATCTGAGGTGCTTTTCCCCATAGACAGTCTGACTAAGAAGCCTAAAGGCTTTGCATTTGTCACATACATGATACCAGAGAATGCAGTATCAGCCCTGGCTCAGCTGGATGGACACACATTCCAGGGTCGCGTTCTGCACGTCATGGCTTCAAGGCTGAAGAAGGAAAAGGCCGATCAGGGGCCTGATGCTCCCGGCAGCTCCTCATATAAGAGAAAGAAAGATGCCAAAGATAAGGCAGCCAGCGGCAGCTCTCATAACTGGAACACGCTGTTTTTGGGTACGAGTGCAGTGGCCGATGCCATCGCTGAGAAATACAACACAACCAAGAGCCAAGTGTTGGATCACGAGTCTGATGGCAGTCTGGCTGTCAGGATGGCTCTTGGAGAGACGCAGATTGTACAAGAAACCAGACAATTTCTCTTGGACAATGGAGTTTCTCTGGACTCGTTCAGTCAGGCGTCGGGTGAGCGCAGTAAATGTGTTATCCTCGTAAAGAACTTGCCGTCAGGAGTGCAGGTTGCAGATCTGGAGGCTCTGTTCTCGCCCCATGGGTCTTTGGGTAGAGTTCTGCTGCCCCCTTCTGGCCTTACAGCGATAGTGGAGTTCCTGGAGCCCACAGAAGCCAAACGTGCTTTCATGAAACTTGCATACACAAAGTTTCAACATGTCCCTTTGTATCTTGAATGGGCTCCTGTCGCTGTCTTTACAACTCCCTCAGCACCTAGACCAGAGCCTCAAACCAAAGAGAAATCTGCTGTGAAAAATGATTCAGTCCaaaatgaagaagaagaggaggaagaggaagaagatgACCAGATTTTACCTGGCTCGACTCTCTTCATTAAGAACTTGAACTTTATCACCTCAGAAGAAACATTACAGAAGACGTTTTCTAAATGCGGCGTGGTGAAAAGCTGCACGATATCAAAGAAAAGAGATAAAGCAGGTAAATTGTTATCGATGGGTTACGGCTTTGTGCAGTACAAAACTCCAGAGGCGGCACAGAAAGCCATGAGACAGCTGCAGCACTGCACAGTTGATGAGCACCAGCTTGAGGTGAAGATATCAGAGAGAGAAGTCAAGTCAGGTGTGGCACAGGCCAAGAGGAAAAAGCAAACCGCCAGGAAACAGACGACCTCTAAGATCTTGGTGCGAAACATCCCTTTCCAGGCCACAGTCAAAGAGCTGAGAGAACTCTTCTGTACGTTTGGAGAGCTGAAGACAGTCCGCCTGCCAAAGAAAGGGATTGGTGGATCCCACCGTGGTTTTGGCTTCATTGACTTCCTCACGAAACAGGATGCCAAGAAAGCGTTCTCAGCACTGTGCCACAGCACTCATCTGTACGGCAGGAGGCTGGTGCTGGAGTGGGCAGATGCTGAGGAGACGGTAGACGACCTGCGGAGGAAAACCGCACAACACTTTCATGATGCTCCTAAGAAGAAGAGGAAGGCGGAGGTGTTAGAGGGAATCCTGGAGCAGATGGAGGTCGGCGATGGAGACGGCGAGTGAATAGCAGCCGTCAGTCATTCACCTCCAGCATCAATAAGAGAGTAAATCATCCAGTGCAACTTCATTTATCTCTATTATGACTGCGTCTTAAACAGCTGCTTCACGGGCCCTCTTCAGGAATTCTTCCTTTTGGCCCCAGATGCTCCCAATTAGCTTTTTATTATATGCTCATACATCATCCCTGTTATTGCTGTCAATGCATTAAACACTGCGTCTCCCTGCAGACCCGCTCCGACTGAAGGTGAACTCCAAGACTAAGTCCTTTTAGAAAAGCAAAAGCCCGAAGGCCACGCTTGCTTTGGCTGTTTTTAATCGTCACAGAGGGCCGAGACGGTTCATACACTGCCTTGACACGCGGATGACATTGAGAAATCGTATCAGAAATGAAATGTGGAAGGGGTTTGATTGTTGTTTGTACACACAGAGATTGTGTATTGTATTTTCAGATACTTACATAattatgtaaagtttttgaggTGTTTAAAGTGATGGTTCAGCCCAAAGTGATGTGTTATTCACTGTCAAGTGGTTTCAAAACATTTAGTTTcctgttttctgttgaacacaatagaagatattttgaagaatgctggaaatccattataaagaataaaaaatacttaagtgGCTGTcgatttctcaaaatatcttcttttgtggagAAATGAAAGCTTAAAATGTTTCAAACAAGCAGTTGTTGAATAAATTACAAGCTTTTTTTGGTAATTTTGTGCAGGGTGAACATGTTCTTTCATTGCATTGCTATTAAATCTGGCCACTTGTCAGTGTTGGTTTTTGAAAAATGACCTTTTTGGGGTTATACTGTATATGACTATAATAAATTAGTCTGGAAAGAGGAGTATTCACTCTAGAAACATCTTTTTGTAAAGTTTGTGAAGTCTGAGGAACATCATGTTGCTTCAAACTAAGCTGTTATGTCAATGACATTTATTGTTCTGGTGCTTTACtgaaatgtttgtttgttcaacTAAAAATGGAAATTTCTATCAACATTTATCTTATTTCattagccttattccaaaatataaAAGCTTAGTATACAAAGCCAATTATGGGTTAGTTGctctaaaaaaaagtaattaatttctGATTGCATCTttacaattgtatttaaataagttTTCTAATTACAGTCAATAATTTTAGTGCGTAAGTCTCAATGCATAGTCAACAGACTTCACACTCTTAATTCTTtaaattggttttgtttttggttttgtttaaaaaataataataatagcccattttttttattgtatgaaaTATAAAGTCATTAATTGAAAacgtttttttaaagcatgtgcAGTTGTTGgacaaataaaaccttttttttttttttacttatggaaaatatctaaacaacaacaaaataaattatttacaatgaCTGTTTCTTTGAATTTATACCTTGTGTCATGAATTAAAATTATTCTGCAAATATACTGCTTCCCTGGATTAATTTACACAGAACTGTTGATTTTTACATACAATATTTAAGCAAGTTCCCTAAAGTAACTAATAAAATTACCTAAAAGGAAAGGTAATCCCTTACTATACGTTTTCAGTTGAAATGTAATTTAGTTAACTAATGTGTAACTAATTGCACCAAATACGTCAGAATAAACAGGCTGGAGCATCATAACTTGcagattttgtaaataaatacagacGGGGTGAAACAAAATGTGGCATTATATAGGAAGGCCATTACATAGTGCTGCGTTTAAACGTGATATTTTTAGTTTGGTTCAGTCGTCTTAACAGCCCTCTCATCAATAGCACACAGAGATGGCCAATCAAATCAACGCAGGCAAGGTGGACCGCTCACTGAAGCCG
>TCONS_00064363
ACACAGTAAAGATGGCGACGCACTAAAGGGCTCCATGCTTTATTGTTGATAAAACCATACATTGTTATTTTACAGGAGAAACTCTCACTTGGCTCAGAAAAATGTCAAGGTTAATAGTCAAAAATCTCCCGAATGGGATGAAGGAAGATCGCTTCCGTAAGATGTTTGCAGATTTTGGGACACTTACAGATTGTGCACTCAAATTTACCAAGGATGGAAAATTTCGCAAATTTGGATTTGTGGGTTTCAAGACAGAAGAAGATGCACAGAAAGCTTTGAAACATTTCAACAAGAGCTTTGTGGACACATCTAGGGTTACTGTGGAATTGTGCACAGATTTTGGCGATCCAAACAAAGCCAGACCCTGGAGCAAACACACACGCCAGCCTTCATCAAAGAAagatacagaagaaaaaaaaacacatgagcaaggagaaaaagaaaaaaagAAGCCGAAGAAGATTTTAAATGTTCTGGGAGATCTTGAAAAAGATGAGAGCTTCCAGGAGTTTCTGGCAGTGCACCAGAAACGTGGACAGGTTCCCACATGGGCCAATGACACTGTGGAAGCGACTGCTGTTAGACCTGAAATGGAGAAGAAGAAAGAGAAGAAGCAGAAAGCGGCTGTTGAAGATGATTACCTGAACTTTGACTCTGATGAATCGGAGGAATCAAGTGATGACGGCGAGGATGCTGCAGATGAAGAGGACAAACAAgATAACGAGAAGGAGGCCTTGAAGACTGGTCTGTCTGATATGGACTATCTCCGCTCCAAAATGGTGGAGAAATCAGACATGCTGGATGAGAAAGATGACGACAGCAGTGCGAGTGCTGCTGATGAAAATGAGGAAGATGAGGGGAAAGAGGAGGAAGAGTCCATAGTCCAGCACGCAGACAGTGCTTATGAGAGTGGAGAGAAGACAAGCAGCCAGAAAAGCACAAGGCCAGCAATTGAGCCAACCACAGAGTTCACAGTCAAGCTACGAGGTGCTCCATTCAATGTCAAAGAGCAACAAGTGAAAGAGTTTATGATGCCTTTGAAACCCGTTGCCATTCGATTCGCTAAGAACAGTGACGGCCGCAACTCGGGTTACGTGTATGTGGACCTACGATCAGAGGCAGAGGTCGAGAGAGCCCTGCGCCTTGACAAGGACTACATGGGAGGGCGCTACATTGAGGTTTTCAGAGCCAACAACTTTAAAAACGACAGGCGTTCTGCAAAAAGAAGCGAGATGGAAAAGAATTTTGTGCGCGAGCTGAAGGACGACGAGGAAGAGGAGGATGTTGCAGAATCTGGACGACTTTTCATTAGAAACATGCCCTACACGTGCACTGAGGAGGATCTGAAAGAAGTATTTAGCAAACACGGTCCTCTATCTGAGGTGCTTTTCCCCATAGACAGTCTGACTAAGAAGCCTAAAGGCTTTGCATTTGTCACATACATGATACCAGAGAATGCAGTATCAGCCCTGGCTCAGCTGGATGGACACACATTCCAGGGTCGCGTTCTGCACGTCATGGCTTCAAGGCTGAAGAAGGAAAAGGCCGATCAGGGGCCTGATGCTCCCGGCAGCTCCTCATATAAGAGAAAGAAAGATGCCAAAGATAAGGCAGCCAGCGGCAGCTCTCATAACTGGAACACGCTGTTTTTGGGTACGAGTGCAGTGGCCGATGCCATCGCTGAGAAATACAACACAACCAAGAGCCAAGTGTTGGATCACGAGTCTGATGGCAGTCTGGCTGTCAGGATGGCTCTTGGAGAGACGCAGATTGTACAAGAAACCAGACAATTTCTCTTGGACAATGGAGTTTCTCTGGACTCGTTCAGTCAGGCGTCGGGTGAGCGCAGTAAATGTGTTATCCTCGTAAAGAACTTGCCGTCAGGAGTGCAGGTTGCAGATCTGGAGGCTCTGTTCTCGCCCCATGGGTCTTTGGGTAGAGTTCTGCTGCCCCCTTCTGGCCTTACAGCGATAGTGGAGTTCCTGGAGCCCACAGAAGCCAAACGTGCTTTCATGAAACTTGCATACACAAAGTTTCAACATGTCCCTTTGTATCTTGAATGGGCTCCTGTCGCTGTCTTTACAACTCCCTCAGCACCTAGACCAGAGCCTCAAACCAAAGAGAAATCTGCTGTGAAAAATGATTCAGTCCaaaatgaagaagaagaggaggaagaggaagaagatgACCAGATTTTACCTGGCTCGACTCTCTTCATTAAGAACTTGAACTTTATCACCTCAGAAGAAACATTACAGAAGACGTTTTCTAAATGCGGCGTGGTGAAAAGCTGCACGATATCAAAGAAAAGAGATAAAGCAGGTAAATTGTTATCGATGGGTTACGGCTTTGTGCAGTACAAAACTCCAGAGGCGGCACAGAAAGCCATGAGACAGCTGCAGCACTGCACAGTTGATGAGCACCAGCTTGAGGTGAAGATATCAGAGAGAGAAGTCAAGTCAGGTGTGGCACAGGCCAAGAGGAAAAAGCAAACCGCCAGGAAACAGACGACCTCTAAGATCTTGGTGCGAAACATCCCTTTCCAGGCCACAGTCAAAGAGCTGAGAGAACTCTTCTGTACGTTTGGAGAGCTGAAGACAGTCCGCCTGCCAAAGAAAGGGATTGGTGGATCCCACCGTGGTTTTGGCTTCATTGACTTCCTCACGAAACAGGATGCCAAGAAAGCGTTCTCAGCACTGTGCCACAGCACTCATCTGTACGGCAGGAGGCTGGTGCTGGAGTGGGCAGATGCTGAGGAGACGGTAGACGACCTGCGGAGGAAAACCGCACAACACTTTCATGATGCTCCTAAGAAGAAGAGGAAGGCGGAGGTGTTAGAGGGAATCCTGGAGCAGATGGAGGTCGGCGATGGAGACGGCGAGTGAATAGCAGCCGTCAGTCATTCACCTCCAGCATCAATAAGAGAACCCGCTCCGACTGAAGGTGAACTCCAAGACTAAGTCCTTTTAGAAAAGCAAAAGCCCGAAGGCCACGCTTGCTTTGGCTGTTTTTAATCGTCACAGAGGGCCGAGACGGTTCATACACTGCCTTGACACGCGGATGACATTGAGAAATCGTATCAGAAATGAAATGTGGAAGGGGTTTGATTGTTGTTTGTACACACAGAGATTGTGTATTGTATTTTCAGATACTTACATAattatgtaaagtttttgaggTGTTTAAAGTGATGGTTCAGCCCAAAGTGATGTGTTATTCACTGTCAAGTGGTTTCAAAACATTTA

Function

symbol description
rbm19 Predicted to enable RNA binding activity. Acts upstream of or within digestive tract morphogenesis. Predicted to be active in nuclear speck and nucleolus. Is expressed in brain and digestive system. Orthologous to human RBM19 (RNA binding motif protein 19).

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0048546 digestive tract morphogenesis biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-031125-3 Predicted to enable RNA binding activity. Acts upstream of or within digestive tract morphogenesis. Predicted to be active in nuclear speck and nucleolus. Is expressed in brain and digestive system. Orthologous to human RBM19 (RNA binding motif protein 19).

Ensembl:

ensembl_id ENSDARG00000042590

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064362 False 4779 mRNA 0.42 24 45843193 45869164
TCONS_00064363 True 3245 mRNA 0.47 25 45844507 45869127

Neighbor

gene id symbol gene type direction distance location
XLOC_033115 cntn3b coding downstream 1131251 44584775 ~ 44711942 (-)
XLOC_033114 pdzrn3b coding downstream 1440835 44243070 ~ 44402358 (-)
XLOC_033113 shq1 coding downstream 1681931 44089189 ~ 44161262 (-)
XLOC_033112 rybpb coding downstream 1798808 44006709 ~ 44044385 (-)
XLOC_033111 NA coding downstream 1840651 43979711 ~ 44002542 (-)
XLOC_033117 epha2a coding upstream 5431 45874595 ~ 45905746 (-)
XLOC_033118 NA coding upstream 54778 45923942 ~ 45929175 (-)
XLOC_033119 tardbp coding upstream 68613 45937777 ~ 45949121 (-)
XLOC_033120 ca16b coding upstream 82729 45951893 ~ 46162585 (-)
XLOC_033121 BX005101.1 coding upstream 298853 46168017 ~ 46251940 (-)
XLOC_033106 BX927362.1 non-coding downstream 2494107 43346929 ~ 43349086 (-)
XLOC_033102 NA non-coding downstream 2770311 43057462 ~ 43072882 (-)
XLOC_033085 NA non-coding downstream 4390305 41451670 ~ 41452888 (-)
XLOC_033077 NA non-coding downstream 4874852 40963686 ~ 40968341 (-)
XLOC_033122 BX005101.2 non-coding upstream 358953 46228117 ~ 46228232 (-)
XLOC_033123 CU041346.1 non-coding upstream 425197 46294361 ~ 46310011 (-)
XLOC_033135 CABZ01055240.1 non-coding upstream 1287138 47156302 ~ 47156416 (-)

Expression


Co-expression Network