XLOC_033117 (epha2a)


Basic Information

Item Value
gene id XLOC_033117
gene name epha2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 45874595 ~ 45905746 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064364
ATTTTTAGTTAGTAAGTTCCTTCATGTCGGAGTCGGGGGAGTTTCGCATGGACCAACAAGTTTAATTAGACAAACACGATGGATTACCGACTCACTCGcgtttctttcttatttttatatttatttgctaatgtatttACTGGGATCCAGTCGAAAGAACATGTACTGCTTGACATGAAGGCTGCCGGGAGCGAATTAGGTTGGTTAACCTGGCCAAAAGAAGAGGGGTGGGAGGTTGTGCAGACGGTGGTGAACGGCTCTCTTCTTTACACCTACAGCGTGTGCAATGTTGCCAGTGACACTGAACAAGACAACTGGCTTCGTACAACCTTCATACAGCGTAGACCCGACGTCTCCCGCATGTCTGTAGAGCTGAGCTTCATCGTCCGCGACTGCAGCACGTTTGGAGGCTCGTCACCCTCCTGTCGCGAGACTTTTGGCCTCTTCCTGGGAGAAACCGACTCAGATGTTGGCACAAATTTCCGCAAGAGCCAGTTTCGAAAGGTAGCCACCGTAGCACCAGACGAAGTGACAGCTGATCGTGGAAGAGGCCGGGCTGATCTGCGGGTGAATGTGGAAAAGCGGAGCATCGGGACGCTCTCCAGAAGGGGCTTCTACCTTGCGTTCCAGGATTTAGGAGGCTGTGTGGCTCTCCTGGGGCTGAGGGTGTTCTACACCACCTGTCCGGCCACCATGAGGAGCCTAGCCGCCTTCCCTGAGCAGGTGGCATTGGGAGCGGAGGTGGAGGGCACCTGTGTGAAGGACGCAGTGGTGCTTGGAGAAGCAGCTCCTCGGATGTACTGCACCGCTGAGGGAGACTGGGTCGTTCCCGTGGGCCAGTGTGTTTGCCGAGCGGGATACCAGGCTGTTGGAGATTCTTGCAAAGCTTGTGAACCGGGTTTCTACAAGAGCACTGATTCCAGCCAGCCTTGTGAAGTGTGTCCAGAAAACACCCAACGTTCGGGACGGGGAGCACTGTTGTGCCCCTGCATGGAGGGTTTCTACCGGGCTCCTACAGACCTAAACTCTGCTCCTTGCTCTTCTCTTCCTAGCCCACCCCGAGACCTGGTTTACACTCCTCTCCTGACAGCAGGAAGTTTGCAGCTGCTTTGGCGCCCACCGGCAGACACTGGTGGTCGGAGTGACGTCACATACAGTGTGGCATGCGAGCGCTGTGAGGGTGGTCTGTGTACGCTGTGTGGCGGAAGGGTGCGATTCGAGCCTGCGCAGACGGCCTTGAGAGCCCCTGAGGTTGTGGTTAGCGAGCTGGAGCCTCATGTGAACTACACTTTTACAGTCGAGGCCCAAAATGGCGTCTCCCAGTTCAGTCGAAAGAGAGCCATGGCTAGCATCACAACAGTGCTTCACTTCACAGATGGCCCGAGGGTGCTGTACTTGAGAGTTGAAGATCGGACCACCAGTAGTCTGACCTTGTCCTGGGCTGTGGACCATCATGTGCAGAATCAACCCTCCCCTCGCTACGAGCTCATGTACCGCAAGAAGGAGGATCCTGGAGAGCTGGATGTCACCACCTACACCGTCCTGGTTCTGGAGAAGAACTCGGTGCCGATTAATGACCTCTTACCAGGAACAAAGTACGTGTTTCGTGTTCACACCCTGACAGCAGAAGGCCATCCCAGCAGCCACAGCGCGGAGCTTGAATTTGAGACGCTGCCTCTCGCGGAATCTCGGACACAGAACAGTTCCATGGTTGTCATGGGAGCCATCGCCGGGGGCGGGGTCATGTTGCTGATTGTGGTGGTTATTCTGCTTCTGCACAAAAGGAGGCTGAATTCCCACGTCAGACGGAGGGTTGATGGAGATTACTTTTCATGTCCAGAAAAACTCCTTCCGTTGAAGACCTACATCGATCCCCACACATATGAAGACCCCTGTGCGGCCATCCTCAAGTTTGCCAGTGAGATTCATCCTGGTCACATCACCAAGCAGAAAGTCATTGGTGCAGGCGAGTTTGGGGAGGTGTTTCGTGGCTCTCTGAAGATGCCGGGCCGCAGTGAGGTCGCAGTAGCCATAAAGACACTGAAGCCAGGCTATACGGAAAAGCAGAGGCAAGACTTCCTCAGCGAGGCCAGCATCATGGGCCAGTTTTCCCACAAGAACATTATCCGTCTGGAAGGTGTCGTCACCAAAtTCAAAGATGCCATGATTATCACCGAGTACATGGAGAATGGAGCTCTGGACCAGTATTTAAGGGATCACGATGGGGATTTTTCCTCATACCAGCTTGTGGGGATGTTGAACGGCATTGCAGCAGGAATGAAGTATCTCTCAGACATGAACTACGTCCATCGGGACCTCGCAGCTCGCAATGTGCTGGTCAACAGCAACTTGGAGTGTAAAGTGTCCGATTTCGGCTTGTCTCGAGTGCTGGAGGACTTTCCTGAGGGAACATACACCACTACTggCGGAAAGATTCCTATTCGCTGGACTGCACCAGAGGCAATAGCTTACAGGAAGTTCACTTCTGCTAGTGATGTGTGGAGCTTCGGCATAGTCATGTGGGAAGTGATGTCATTTGGAGAAAGACCCTACTGGGACATGAGCAACCAAGAGGTGATGAAATCCATAAACGACGGCTACAGGTTGCCAGCACCGATGGGCTGCCCGTCAGCAGTTAATCAGCTGATGCTGCAGTGTTGGATGCAGGACCGCTCCACTCGACCACGCTTTGTTGATATCGTCAACCTCCTGGAGAAGCTGCTCCGCAACCCGGAGTCACTTACATCCATCGCCAGCATCGACCCACGTGTCTCCATTCGTCTACCCAGCACTAGTGGTTGTGATGGCGCCCCCTTCAGGTCAGTGGACGAATGGCTGGAATCCATCAAAATGGCCCAGTACAGAGAAACCTTCGCCCTCGCTGGCATTAAATCTTTCGACCAGGTGCTGCGCTTGAAAATTGAGGACATCGGGAATATTGGAGTTCGGCTGGCAGGTCATCAGAAGAGAATAGCATACAGCATTTTGGGCCTGCAAGACCCAGTGGGGGCCTTGGATTTGTTTGCAATGTGATAATACGGTCGACTGAAGCAACACTGTTttgaatggattttaaaaaaaactgactaaAGACTAGAATGCCCTTTTTCAATCAAACGGACTCCCTCTGGGAATATGAACACTTTACTGTTAGTTTGTTTATGCATTTTATAGTCTATTTTTCCACATGTCAGATGGACCCTTATGCTCTTTGCCATGTTTTAAACATAAGCCATATTAAGCACACGTATGATGGTAAGCTTTGAAATGCTATAACTACTGTCTCAGGTCTGATGATTAGGGTACTATCAAGTCTACGGTAGTAACCTTGGATATTACTGTGGTGCCCTTATAGTGAACAAAGCTGCCCGAATATGAGGGGTTGAAGTCTGATTAAACTTTGTACAAttgtaattgtaaaaatgtttgtagtaaacatgatttttttttttttgtcaaattgttGACCTGCATCCTTTTCTGTCAAAAGGATGTTTAAGATGTCTTATTTCagctctttttatttaatatttattttttatttattgtacgtgtttgtaaagaaaaatacttttgtgtatagtattaaaatattttttaagtcttA
>TCONS_00064365
gacgacccctgatgagaaaaggaactaagccaaaagaaaatgaatgaatgaattgtatacAAAAGTCTGACAttgtatgttgtttgttttatttgtttttagggCGGAAAGATTCCTATTCGCTGGACTGCACCAGAGGCAATAGCTTACAGGAAGTTCACTTCTGCTAGTGATGTGTGGAGCTTCGGCATAGTCATGTGGGAAGTGATGTCATTTGGAGAAAGACCCTACTGGGACATGAGCAACCAAGAGGTGATGAAATCCATAAACGACGGCTACAGGTTGCCAGCACCGATGGGCTGCCCGTCAGCAGTTAATCAGCTGATGCTGCAGTGTTGGATGCAGGACCGCTCCACTCGACCACGCTTTGTTGATATCGTCAACCTCCTGGAGAAGCTGCTCCGCAACCCGGAGTCACTTACATCCATCGCCAGCATCGACCCACGTGTCTCCATTCGTCTACCCAGCACTAGTGGTTGTGATGGCGCCCCCTTCAGGTCAGTGGACGAATGGCTGGAATCCATCAAAATGGCCCAGTACAGAGAAACCTTCGCCCTCGCTGGCATTAAATCTTTCGACCAGGTGCTGCGCTTGAAAATTGAGGACATCGGGAATATTGGAGTTCGGCTGGCAGGTCA

Function

symbol description
epha2a Predicted to enable transmembrane-ephrin receptor activity. Predicted to be involved in axon guidance; positive regulation of kinase activity; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in tail bud. Human ortholog(s) of this gene implicated in cataract 6 multiple types. Orthologous to human EPHA2 (EPH receptor A2).

GO:

id name namespace
GO:0033674 positive regulation of kinase activity biological_process
GO:0007275 multicellular organism development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007411 axon guidance biological_process
GO:0016310 phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0043005 neuron projection cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0005003 ephrin receptor activity molecular_function
GO:0005005 transmembrane-ephrin receptor activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-63 Predicted to enable transmembrane-ephrin receptor activity. Predicted to be involved in axon guidance; positive regulation of kinase activity; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in tail bud. Human ortholog(s) of this gene implicated in cataract 6 multiple types. Orthologous to human EPHA2 (EPH receptor A2).

Ensembl:

ensembl_id ENSDARG00000017354

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064364 False 3607 mRNA 0.50 17 45874595 45905746
TCONS_00064365 True 638 lncRNA 0.50 4 45875242 45879140

Neighbor

gene id symbol gene type direction distance location
XLOC_033116 rbm19 coding downstream 5431 45843193 ~ 45869164 (-)
XLOC_033115 cntn3b coding downstream 1162653 44584775 ~ 44711942 (-)
XLOC_033114 pdzrn3b coding downstream 1472237 44243070 ~ 44402358 (-)
XLOC_033113 shq1 coding downstream 1713333 44089189 ~ 44161262 (-)
XLOC_033112 rybpb coding downstream 1830210 44006709 ~ 44044385 (-)
XLOC_033118 NA coding upstream 18196 45923942 ~ 45929175 (-)
XLOC_033119 tardbp coding upstream 32031 45937777 ~ 45949121 (-)
XLOC_033120 ca16b coding upstream 46147 45951893 ~ 46162585 (-)
XLOC_033121 BX005101.1 coding upstream 262271 46168017 ~ 46251940 (-)
XLOC_033122 BX005101.2 coding upstream 322371 46228117 ~ 46228232 (-)
XLOC_033111 NA non-coding downstream 1872053 43979711 ~ 44002542 (-)
XLOC_033106 BX927362.1 non-coding downstream 2525509 43346929 ~ 43349086 (-)
XLOC_033102 NA non-coding downstream 2801713 43057462 ~ 43072882 (-)
XLOC_033085 NA non-coding downstream 4421707 41451670 ~ 41452888 (-)
XLOC_033077 NA non-coding downstream 4906254 40963686 ~ 40968341 (-)
XLOC_033123 CU041346.1 non-coding upstream 388615 46294361 ~ 46310011 (-)
XLOC_033135 CABZ01055240.1 non-coding upstream 1250556 47156302 ~ 47156416 (-)

Expression


Co-expression Network