XLOC_033118


Basic Information

Item Value
gene id XLOC_033118
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 45923942 ~ 45929175 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065222
TATTGTGAAAAGCCACTGCTGAATAATCTCATAGTATTCATCGTGTTCTCGTTTATAGCAACAGCCCTTTTCCTTCACACTGAAGGTTTGTCTATAGCGATTACACTCACAGACCCAGTTCCCAAAACCATCCGGGCAGCGTTTCACACATTTGGTCTGTTTTCATTCATTGAGGGACTCTGTACAGTCATTTTAACCTTGACTGCACCTCAGTGTgcaAACACCACCACAGAATTGTACATATTTTCGTTGGTAGCCTCTTGGGCCTGCATATTCTCAACAGCTTTCTTTGTAGTCAGAGGAGGTCTCTGCCTAGTCCATAAACTATTTCCTCATTGGTTAAGAGATGCGTGCCTCTGGGACTGAAAAATGAGCTTCTACTACCTTCACTGACACTCAATACAGGtgcatttattattaacatgCTTTCAGACAGTTGTGAGACTCTATTCATCGATATCTCTTTTCACCAATATTAGCATACAATGGAGGCGAGAAAATAGacagactgcatttatttaaagaaaacttAAGCATTGTGTTTAGAGTCTGATTATTTGGGATGTGTACTTTGCTCAAATGCATtgtaacaaaagaaaaagaaataaaaacactgatgctttcaaaaatatattttattgctatGTAGTAAAACCACTGCAAAATATGAAATGGTGTTTTTGATGCTGTGTAATACAGTTGTGTGTAATGGCATGTAATACAAGTGAATACCGTAACAACAGTTCCTGGAAACATATAATGGAAAAGCAAtacaccatagatatatacactagatatcacatatggaccctgagtatgcgtcaatagcgctgccACATTTGTACAATGCTCCCACCACAGATGTCATTCAACCTAACTAAACAAGACTAAAGCTAATGTTAAGTTGCttgactttagcgctgtgtacgggtgtatTAGCGtgcaaacacaataaaacaaagcataaatgcagaacatttcataggtaagattttgtttttgtatgttatgaactatTGTGCTTAACAATTAATGTTATCGATAGTGATGTCACTTACTGCACTGATCATGAGGCAAAGTAGCATCAACTTGCTCAAAATTCTAGGTTTATgcttttgttaaattaaataagcaaataagatgctgcggtgccagaaaatTTTATTATTGTGGTCTAAGCGAATGAGTCtttcataacagagattcattcataaacaaatcgctccctccctTAAAATGAGAGGTGAAAGCGgaagagggggtgtgtttcaggacacagatcagatcaaatttaacagggagggaggataatacattttcatgcacacaaacatacgcTTTTGTCAGCAATGCCCGTATGGTCACTTATTCATCAATGAAGAGaagtgatgtcaaattataattttcttaattaaaaaaaaaattgcatatataGATCAATGGGAAAACTTCCCATTATAGATGCATGTATATTTGTCTGTATATCTTTAGCTCTGggtggccagtcctccactgcaccttggtcccaaaTTTAATTCAAAGGAGTggtaccctgtactaaaatggcagctctattgacacattccttccaatagacaacaacaaggTGCTCCCttggcgacatctaatgtaaatatctatggcaaTACACTTCATTGAGAAGTGTCAGTTCATGTTTTAAACCTCTCTGCAAGGCACATACTTTCTTGGAATACACACAGTAGGATTTGTACAATGTTACACATTATTTATAGGCACTTTACGAAAACCACGAATCAATTTAAACAGAATTTAGAGTGTGATTTTAAAACCCAGTGCATTTATTcgaaagttttattaatattttcacaaaTTAGATGATCCGATTCATGTGGAATGTAATGTTCTGATTCACTACACAATGTTTGGCAAACCACTGGCTATGACACTGGTCTCAAACTGAATTCCTGAAGATCCGCAgatctgcagagtttagctccaaccacctccaaatcacacctgcttaatagtctcttgCAGTCTTTAACACCTTGATtaattggatcagctgtgtttgattagggttggagcaaaacggcggcccttcaggaattaagtttgagacccaTAGGCTTTGATAATACTACCCAGCTGTCCATAAAAGTCTTGCAGTGTCTCAAAAATCATGAAATGTGCTTCTTCAATTTAAACAATATCTGTAGAAAGGCATTCATGTTAAGATATGAAACCAATGTAAGGCGTTGTGCCATCTGAATTGCTTGACACACAATAAACCATTGTTTATGGAGGAATGACAAACATTTTTGACAGTAATACACTCTGTCAACAGTGTAGGTATGGAATGGTTTCATCAAGTAAGGTTAACTGAAACTCAGTTCAGTCtaaaaaaatgttgcatttaCATTTGTTCAGTCCTAAAAGCATAAGAAATGCCATCTTAGGCATGTTTTGTGATCTTGTTTTATGAGTATTAAACCTGAGTTCTGAAATTATATATGATTTCACCTTTAATTGAAATCCTTGAATAACAAGGAAGGAAAAGAaaccaaatataataaaaagaagCTAATTTAACCTGGCAGTGTGTAAATTAACAGGAGTAAGTATAGTTACACTGGggggaaaaaaagtcaaattacaGAGCACTCCAATATCTGTTCTCTTATCACCTTTTGGTCTCAAATGCGCAAAAGTGCTTTATGTGGAATGACATTTTTCATACATGTCCTAATAACTGCCATCTAAACTGAATTGTCTTGTGACGAATGTTAGCAAAAGTGAAAATTATCACACAAAATGACTAATTACACGAACCTAACAGAGTTCCTGAGATTTGAAATAGTAACCTTTTTGTAAATTCTATCATTTAAATGCATTCATTCCTTAATCCATCAATCAAATTACAAAGTTCCTTTCACAGCATTAAAATAACTCTGACAAATCCCACCTCATTTGGTGCATAAATGGAACTTCAAATGATACTGCAATCATTCACTATACAGCATTTCATTTCAGCTAGACGCCCTGATGGGTGGCTTCACTGACCAATCTATGCTGGAATTTTATCCTAGTAATGCATCATAATCAATGTACCATATAAGACTACCATTATTTGGCTGTACTTTGGTAATGGGGTACCTTGATGATTCCCCCTTAATTCGACTAAGCTGAGTAACAAGTTCATGCTTGCTCTTCCCCATTACTAAAACACCGACCCTTCGAGCCTTATTAATGGCTGTGAATGTCAGACTCATCCTTTGATGAGGTTTAATGGGGCTCTCTGTCAGGGTTACCAACCGTTCTCCATCGCTTTCCAATTTGGTGTCCTGGAATAAAGAGGCAGTATGGCCATCCTGGCCTACACCTAGCAGAATGTAATGGAAGCTAGAGGCATTGACATGCTTTTGGATTTCCTTCTCATATAATGTAGCACCACCATCCTCTTCCACACATAACCGCTGCGTGAGATGCACTGGCATAGGATGGATGTTGAAGTAGGGTATGCGGATATGCTGAAGCAGGAGATCATGAATTGACCGGAAGTTAGAGCCTGACTCTGTATGTGGCACACATCTCTCATCTACTTGCCATATGTGAGTGTTTCGCCATGGAAAAGTGTAAAGGTTGAGGGCTAGTGCACGGAGCAGTGCAACCGGGCTGGAGCCACCAGACAATGCCAGATGAAACTGACCTTCTCTGCGAATGGCCTCCTCGGCAGCCAGCAGAAGATCAGAAGCCAAGCGTTCCACCAGTTCCTGCGCCCAGGCAGAAATCATTTCAGAACTACGGTACTTCCCTTGCATCACCTGGAAGTTCTCTTCAGCTCCACGGTTGATAACATTGACCACAGCTTCATGGCTGAAAGCAATCTGATGACCCCGTAGCTGAAAATTTAGCAGGTTCCCGTTGCTCACACCACCAGGATAAATCCGTGGATAGACGTGAGACAGGCTTTCAAGGAGGGGTGTCCAAAACGCCCAGGAAGCAAGAAGTCCTTCGGCACTGATAAAGCTATCCTTGCGTCCAAAGAAGACGTGCGAGATCAGCTCGCCATAAGCCTCTCTGGGTGCAACTGGTGACTGGATGTAATAATCACTAAGTGGTAAACCCAGCAGGTTCACTTCTTTGTATTCAGTGACTTCCTTCCAGTCACCGCTGCTCACTATCTCAGGTTTGAGCAGGTTCTTGCTCACGAGAATGGAAGGGTATTGGAGGTTGCCGTGTCCCAGATAAAATATAATCTGTTTGGATTTGCACTGAACATTGTTGGGATCCTGGACGCAAAACACATCGCTTTTGAAAAGGACACGTGCATAACTGACCCGTTCATCGAGAGCCTTGCCTGAGGTCATAAATATGGGGATGCCCTCGTATTGTGCATTGTCAACATGAATAACCACACCTGAAAAGAGTCAAGAAAAGCATGATTTTACAGACGAACACTGCTTTAAATctgtgactgtttacatgcacATGAACCATCACCTTTAGGGTCAGAAatatcaaactcaattcctggagggccacagccctgcagtttagttctaaccctgcttCAACTCTctaacctgtaggttttaaaacaagcctaaaggactcaattagttggatcaggtgtgtttaattagggctgtACTAAACTGCagaactgcggccctccaggaactgagtttgacacttgtGTTTTAGGTGATTTatgccgtactcacactaggtacagttgcctcgaaccaggccaaagcacgcttgtcccccgtcccgtctcccccgacggcccgcactcacaccacaaatgggcctcggcacgctacgtcatcgctgctgtgctgttcagtgagaagcgctctctcactcagcagcacagtggagatttctccagttatattgtttcagtcgtttgatatgcagtcaaatatttcgccaaacagtccgtagggatgcggtgacacgcagtcagatatttcgccaaacagatccgccacttttggcgctcataaacaat

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0043137 DNA replication, removal of RNA primer biological_process
GO:0000280 nuclear division biological_process
GO:0005813 centrosome cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065222 True 5002 lncRNA 0.41 4 45923942 45929175

Neighbor

gene id symbol gene type direction distance location
XLOC_033117 epha2a coding downstream 18196 45874595 ~ 45905746 (-)
XLOC_033116 rbm19 coding downstream 54778 45843193 ~ 45869164 (-)
XLOC_033115 cntn3b coding downstream 1212000 44584775 ~ 44711942 (-)
XLOC_033114 pdzrn3b coding downstream 1521584 44243070 ~ 44402358 (-)
XLOC_033113 shq1 coding downstream 1762680 44089189 ~ 44161262 (-)
XLOC_033119 tardbp coding upstream 8602 45937777 ~ 45949121 (-)
XLOC_033120 ca16b coding upstream 22718 45951893 ~ 46162585 (-)
XLOC_033121 BX005101.1 coding upstream 238842 46168017 ~ 46251940 (-)
XLOC_033122 BX005101.2 coding upstream 298942 46228117 ~ 46228232 (-)
XLOC_033123 CU041346.1 coding upstream 365186 46294361 ~ 46310011 (-)
XLOC_033111 NA non-coding downstream 1921400 43979711 ~ 44002542 (-)
XLOC_033106 BX927362.1 non-coding downstream 2574856 43346929 ~ 43349086 (-)
XLOC_033102 NA non-coding downstream 2851060 43057462 ~ 43072882 (-)
XLOC_033085 NA non-coding downstream 4471054 41451670 ~ 41452888 (-)
XLOC_033077 NA non-coding downstream 4955601 40963686 ~ 40968341 (-)
XLOC_033135 CABZ01055240.1 non-coding upstream 1227127 47156302 ~ 47156416 (-)
XLOC_033138 AL929512.1 non-coding upstream 1673424 47602599 ~ 47602715 (-)

Expression


Co-expression Network