G1411449


Basic Information

Item Value
gene id G1411449
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 77607265 ~ 77609322 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1612858
gtagacctcacagtgaaatgctgaatacaacagtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcccagtgaaatgctgaatacaacaggtgtagtagaccttagtgaaatgctgaatacaacaggtgtagtagacctcccagtgaaatgctgaatacaacaggtgtagtagacctgacagtgaaatgcttacttacaggcccttaaccaacaatgcagtattaagaaaaaagtaagagataagaataacaaataattaaagatc
>TU1612859
gtagtagacctcacagtgaaatgctgaatacaacaggtgtagtataccttacagtgaaatgctgactacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacattgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtaaaccccacagtgaaatgctaaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttagtgaaatgctgaatacaacaggtgtagtagaccttagtgaaatgctgaatacaacaggtgtagtagaccttagtgaaatgctgaatacaacaggtgtagtagacctcccagtgaaatgctgaatacaacaggtgtagtagacctgacagtgaaatgcttacttacaggcccttaaccaacaatgcagtattaagaaaaaagtaagagataagaataacaaataattaaagatc
>TU1612860
gtagtagacctcacagtgaaatgctgaatacaacaggtgtagtataccttacagtgaaatgctgactacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacattgaaatgctgaatacaacaggtgtagtagacctcccagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaataca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1612858 False 470 lncRNA 0.40 3 77607265 77609246
TU1612859 False 624 lncRNA 0.39 4 77607265 77609322
TU1612860 True 260 lncRNA 0.41 3 77608315 77609322

Neighbor

gene id symbol gene type direction distance location
ikbkg LOC106572992 coding downstream 24607 77493860 ~ 77582658 (-)
LOC110491186 LOC106572997 coding downstream 462467 77138689 ~ 77144798 (-)
LOC110492706 LOC106566322 coding downstream 502548 77102080 ~ 77104717 (-)
LOC118939598 LOC106572974 coding downstream 610245 76807151 ~ 76997020 (-)
LOC110514470 uba1 coding downstream 832501 76705789 ~ 76774764 (-)
flna LOC100380643 coding upstream 346277 77955599 ~ 78024979 (-)
LOC118939482 NA coding upstream 418885 78028207 ~ 78029944 (-)
dnase1l1 LOC106566338 coding upstream 462297 78071619 ~ 78096380 (-)
LOC110512774 LOC106566310 coding upstream 495258 78104580 ~ 78137424 (-)
ndnl2 LOC106593143 coding upstream 558643 78167965 ~ 78193667 (-)
G1411442 NA non-coding downstream 12535 77594399 ~ 77594730 (-)
G1411438 NA non-coding downstream 32866 77571944 ~ 77574399 (-)
G1411433 NA non-coding downstream 61340 77537669 ~ 77545925 (-)
G1411259 NA non-coding downstream 113530 77492466 ~ 77493735 (-)
G1411417 NA non-coding downstream 131640 77475201 ~ 77475625 (-)
G1411453 NA non-coding upstream 1444 77610766 ~ 77611074 (-)
G1411474 NA non-coding upstream 1881 77611203 ~ 77611564 (-)
G1411498 LOC106566291 non-coding upstream 38747 77648069 ~ 77653082 (-)
G1411740 NA non-coding upstream 119168 77728490 ~ 77729372 (-)
G1411748 NA non-coding upstream 146054 77755376 ~ 77755913 (-)
G1411366 NA other downstream 256040 77349553 ~ 77351225 (-)
G1411281 NA other downstream 441442 77165458 ~ 77165823 (-)
G1410911 NA other downstream 635146 76961470 ~ 76972119 (-)
G1410776 LOC106591762 other downstream 810154 76795583 ~ 76797111 (-)
G1410773 NA other downstream 812212 76792420 ~ 76795053 (-)
G1411862 NA other upstream 440944 78050266 ~ 78053138 (-)
G1411845 rl10 other upstream 447645 78056967 ~ 78067510 (-)
G1412091 NA other upstream 706995 78316317 ~ 78318998 (-)
G1412203 LOC100136012 other upstream 894969 78504291 ~ 78511632 (-)

Expression


Co-expression Network