G1411845 (rl10)


Basic Information

Item Value
gene id G1411845
gene name rl10
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 78056967 ~ 78067510 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1613387
GCTCATTATAAAGTCCTTCCCCCTTACTCACCTTGCCCAAGTCAACCCCTCATCTAAAGTCAGAATCAGCAGTGAAATGACAACAAGAGCAGGTCAGATTAATATTTTATTTGCCGACTATTCAGATGTATTCATTCACCATGTCTGACCTCTTGTGAAGCCGAGGACCAGACAGGCATCCTATGGGATGTTGAACCTGTCCAGACCGTCTGTAGTTGGGTGTCTAGATGGCGTAATCTTCTTCCAGCGAGCCAGAGGACCTGGGTGTCTAGATGGCGTGAATCTTCTTCCAGCGAGCCAGAGGACCAGTCGAAGGGATGTACTTCACCCCACAGCCATCAGGAATCACACGCTTTTCAGCCATCATTTGGTCAAAGTCCACCGCGTTGAACTTGGTGAAGCCGTACTTCTTAGACATGTGgatctgagggagggagaggtgagtgaTCAGAGGTCCTCTACAGACAGCAATGTTTCTCAGTttgtaaatga
>TU1613384
GCTCATTATAAAGTCCTTCCCCCTTACTCACCTTGCCCAAGTCAACCCCTCATCTAAAGTCAGAATCAGCAGTGAAATGACAACAAGAGCAGGTCAGATTAATATTTTATTTGCCGACTATTCAGATGTATTCATTCACCATGTCTGACCTCTTGTGAAGCCGAGGACCAGACAGGCATCCTATGGGATGTTGAACCTGTCCAGACCGTCTGTAGTTGGGTGTCTAGATGGCGTAATCTTCTTCCAGCGAGCCAGAGGACCTGGGTGTCTAGATGGCGTGAATCTTCTTCCAGCGAGCCAGAGGACCAGTCGAAGGGATGTACTTCACCCCACAGCCATCAGGAATCACACGCTTTTCAGCCATCATTTGGTCAAAGTCCACCGCGTTGAACTTGGTGAAGCCGTACTTCTTAGACATGTGgatctgGCGTCCGGGGAACTTGAACTTGGCTCTGCGGAGAGCCTCGATAATGTGCTCCTTGTTGCTGGCCTTGGTGCGGACAGACATGATCACCTGACCGATTCTAACACGGGCCACGGTGCCCAGGGGTTTACCGAACGCACCACGCATCCCTGTCTGGAGCCTAGAAACAGAACAAAACACGTCTCACTGACgaacagacagaacacatc
>TU1613385
GCTCATTATAAAGTCCTTCCCCCTTACTCACCTTGCCCAAGTCAACCCCTCATCTAAAGTCAGAATCAGCAGTGAAATGACAACAAGAGCAGGTCAGATTAATATTTTATTTGCCGACTATTCAGATGTATTCATTCACCATGTCTGACCTCTTGTGAAGCCGAGGACCAGACAGGCATCCTATGGGATGTTGAACCTGACCAGACCGTCTGTAGTTGGGTGTCTAGATGGCGTGAATCTTCTTCCAGCGAGCCAGAGGACCAGACCGTCTGTAGTTGGGTGTCTAGATGGCGTGAATCTTCTTCCAGCGAGCCAGAGGACCAGTCGAAGGGATGTACTTCACCCCACAGCCATCAGGAATCACACGCTTTTCAGCCATCATTTGGTCAAAGTCCACCGCGTTGAACTTGGTGAAGCCGTACTTCTTAGACATGTGgatctgGCGTCCGGGGAACTTGAACTTGGCTCTGCGGAGAGCCTCGATAATGTGCTCCTTGTTGCTGGCCTTGGTGCGGACAGACATGATCACCTGACCGATTCTAACACGGGCCACGGTGCCCAGGGGTTTACCGAACGCACCACGCATCCCTGTCTGGAGCCTAGAAACAGAACAAAACACGTCTCACTGACgaacagacagaacacatc
>TU1613388
GCTCATTATAAAGTCCTTCCCCCTTACTCACCTTGCCCAAGTCAACCCCTCATCTAAAGTCAGAATCAGCAGTGAAATGACAACAAGAGCAGGTCAGATTAATATTTTATTTGCCGACTATTCAGATGTATTCATTCACCATGTCTGACCTCTTGTGAAGCCGAGGACCAGACAGGCATCCTATGGGATGTTGAACCTGTCCAGACCGTCTGTAGTTGGGTGTCTAGATGGCGTAATCTTCTTCCAGCGAGCCAGAGGACCAGACCGTCTGTAGTTGGGTGTCTAGATGGCGTGAATCTTCTTCCAGCGAGCCAGAGGACCAGACCGTCTGTAGTTGGGTGTCTAGATGGCGTGAATCTTCTTCCAGCGAGCCAGAGGACCAGTCGAAGGGATGTACTTCACCCCACAGCCATCAGGAATCACACGCTTTTCAGCCATCATTTGGTCAAAGTCCACCGCGTTGAACTTGGTGAAGCCGTACTTCTTAGACATGTGgatTTCTGGCGTCCGGGGAACTTGAACTTGGCTCTGCGGAGAGCCTCGATAATGTGCTCCTTGTTGCTGGCCTTGGTGCGGACAGACATGATCACCTGACCGATTCTAACACGGGCCACGGTGCCCAGGGGTTTACCGAACGCACCACGCATCCCTGTCTGGAGCCTAGAAACAGAACAAAACACGTCTCACTGACgaacagacagaacacatc
>TU1613386
GCTCATTATAAAGTCCTTCCCCCTTACTCACCTTGCCCAAGTCAACCCCTCATCTAAAGTCAGAATCAGCAGTGAAATGACAACAAGAGCAGGTCAGATTAATATTTTATTTGCCGACTATTCAGATGTATTCATTCACCATGTCTGACCTCTTGTGAAGCCGAGGACCAGACAGGCATCCTATGGGATGTTGAACCTGTCCAGACCGTCTGTAGTTGGGTGTCTAGATGGCGTGAATCTTCTTCCAGCGAGCCAGAGGACCAGTCGAAGGGATGTACTTCACCCCACAGCCATCAGGAATCACACGCTTTTCAGCCATCATTTGGTCAAAGTCCACCGCGTTGAACTTGGTGAAGCCGTACTTCTTAGACATGTGgatctgagggagggagaggtgagtgaTCAGAGGTCCTCTACAGACAGCAATGTTTCTCAGTGTAAAGGAACGTGGCCCTTAAGACGTGTAAAACCCCATAGCCGGAAATCTAATTTGCATAATAAAACGATCCATAAAAATCTGCCAGGAAGCTAGAGATCTGTTCCCATTGGCCGAGTCTCGATCCACCACTTCCGCctctgcagtgaaaggtggcatagctagagcagtgtttggtcagaccatgagacatccttgAAAATCAGTCTCAAACAAAACATCTAACGTATGAACGGTTTggctacaaactattatgacctggATGGAAAGGAGACTcaaacacaatggtgttctccgtttacGCTAAAACATCAAGTGTCTTGGACTCCTCCAAAGTCATTACAGTTGATCTGACAACTTCTATTGagtccaaacagtttgggctacactaTTAAGACCCCTCTGGAAAGGTCTCAATGTTGGTTGTTTAGCATTATGACACCTCCAGGCTGCAAGGCTCACCTGAAGTCTGGAACCAAGCAACATTTTTTGGGAAGTATAGGTGaagactgtttagtgccaaaaataaggggttaaatgtgttgtttttaaaTCCGATCTTCcgtctctcagatataggacagacatttCAGA
>TU1613383
GCTCATTATAAAGTCCTTCCCCCTTACTCACCTTGCCCAAGTCAACCCCTCATCTAAAGTCAGAATCAGCAGTGAAATGACAACAAGAGCAGGTCAGATTAATATTTTATTTGCCGACTATTCAGATGTATTCATTCACCATGTCTGACCTCTTGTGAAGCCGAGGACCAGACAGGCATCCTATGGGATGTTGAACCTGTCCAGACCGTCTGTAGTTGGGTGTCTAGATGGCGTAATCTTCTTCCAGCGAGCCAGAGGACCTGGGTGTCTAGATGGCGTGAATCTTCTTCCAGCGAGCCAGAGGACCAGTCGAAGGGATGTACTTCACCCCACAGCCATCAGGAATCACACGCTTTTCAGCCATCATTTGGTCAAAGTCCACCGCGTTGAACTTGGTGAAGCCGTACTTCTTAGACATGTGgatctgagggagggagaggtgagtgaTCAGAGGTCCTCTACAGACAGCAATGTTTCTCAGTGTAAAGGAACGTGGCCCTTAAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1613387 False 492 TUCP 0.48 3 78056967 78067510
TU1613384 False 633 TUCP 0.51 3 78066037 78067510
TU1613385 False 648 TUCP 0.51 3 78066037 78067510
TU1613388 False 709 lncRNA 0.51 2 78066037 78067510
TU1613386 False 1030 TUCP 0.45 2 78066362 78067510
TU1613383 True 505 TUCP 0.49 2 78066932 78067510
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118939482 NA coding downstream 36093 78028207 ~ 78029944 (-)
flna LOC100380643 coding downstream 41058 77955599 ~ 78024979 (-)
ikbkg LOC106572992 coding downstream 483379 77493860 ~ 77582658 (-)
LOC110491186 LOC106572997 coding downstream 921239 77138689 ~ 77144798 (-)
LOC110492706 LOC106566322 coding downstream 961320 77102080 ~ 77104717 (-)
dnase1l1 LOC106566338 coding upstream 4109 78071619 ~ 78096380 (-)
LOC110512774 LOC106566310 coding upstream 37070 78104580 ~ 78137424 (-)
ndnl2 LOC106593143 coding upstream 100455 78167965 ~ 78193667 (-)
LOC110492727 NA coding upstream 134375 78201885 ~ 78203768 (-)
LOC110492720 LOC106573003 coding upstream 138629 78206139 ~ 78314948 (-)
G1411850 LOC106592737 non-coding downstream 754 78064518 ~ 78065283 (-)
G1411861 NA non-coding downstream 20393 78045314 ~ 78045644 (-)
G1411819 NA non-coding downstream 113532 77951227 ~ 77952505 (-)
G1411817 NA non-coding downstream 116371 77949451 ~ 77949666 (-)
G1411813 NA non-coding downstream 119528 77945584 ~ 77946509 (-)
G1411867 NA non-coding upstream 58 78067568 ~ 78067842 (-)
G1411876 NA non-coding upstream 49236 78116746 ~ 78120205 (-)
G1411896 NA non-coding upstream 79809 78147319 ~ 78147782 (-)
G1411906 NA non-coding upstream 100967 78168477 ~ 78172534 (-)
G1411909 NA non-coding upstream 111295 78178805 ~ 78179268 (-)
G1411862 NA other downstream 12899 78050266 ~ 78053138 (-)
G1411366 NA other downstream 714812 77349553 ~ 77351225 (-)
G1411281 NA other downstream 900214 77165458 ~ 77165823 (-)
G1410911 NA other downstream 1093918 76961470 ~ 76972119 (-)
G1410776 LOC106591762 other downstream 1268926 76795583 ~ 76797111 (-)
G1412091 NA other upstream 248807 78316317 ~ 78318998 (-)
G1412203 LOC100136012 other upstream 436781 78504291 ~ 78511632 (-)
G1411812 NA non-coding downstream 112034 77944245 ~ 77944933 (-)

Expression

G1411845(rl10) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 125.
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G1411845(rl10) Expression in each Bioproject

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G1411845(rl10) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 7500.
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Co-expression Network