Fish Transcriptome and Expression Database

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model fish

XLOC_033122 (BX005101.2)

Basic Information

Item	Value
gene id	XLOC_033122
gene name	BX005101.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007117.7
NCBI id	CM002890.2
chromosome length	60270059
location	46228117 ~ 46228232 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064372
TACACAGCCATACCACCCTGCAGCTCAAGatcagttactcactgaagctaagcagggttgagcctggttagtacctggatgggagaccacatgggaaaaccaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000107680

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00064372	True	116	rRNA	0.51	1	46228117	46228232

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_033120	ca16b	coding	downstream	65532	45951893 ~ 46162585 (-)
XLOC_033119	tardbp	coding	downstream	278996	45937777 ~ 45949121 (-)
XLOC_033118	NA	coding	downstream	298942	45923942 ~ 45929175 (-)
XLOC_033117	epha2a	coding	downstream	322371	45874595 ~ 45905746 (-)
XLOC_033116	rbm19	coding	downstream	358953	45843193 ~ 45869164 (-)
XLOC_033123	CU041346.1	coding	upstream	66129	46294361 ~ 46310011 (-)
XLOC_033124	camk1a	coding	upstream	125678	46353910 ~ 46403475 (-)
XLOC_033125	rdh20	coding	upstream	230184	46458416 ~ 46474483 (-)
XLOC_033126	kcnb1	coding	upstream	279377	46507609 ~ 46565466 (-)
XLOC_033127	ptgis	coding	upstream	339887	46568119 ~ 46589726 (-)
XLOC_033111	NA	non-coding	downstream	2225575	43979711 ~ 44002542 (-)
XLOC_033106	BX927362.1	non-coding	downstream	2879031	43346929 ~ 43349086 (-)
XLOC_033102	NA	non-coding	downstream	3155235	43057462 ~ 43072882 (-)
XLOC_033085	NA	non-coding	downstream	4775229	41451670 ~ 41452888 (-)
XLOC_033135	CABZ01055240.1	non-coding	upstream	928070	47156302 ~ 47156416 (-)
XLOC_033138	AL929512.1	non-coding	upstream	1374367	47602599 ~ 47602715 (-)
XLOC_033141	NA	non-coding	upstream	1751073	47979305 ~ 48061659 (-)
XLOC_033145	CU469362.1	non-coding	upstream	2152013	48380245 ~ 48381223 (-)

Expression

Co-expression Network