LOC110515042 (LOC106564127)


Basic Information

Item Value
gene id LOC110515042
gene name LOC106564127
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 1166086 ~ 1173984 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948513.1
TTGATAGTTAGCTAGCGGGGTTATTTTGCAAGTGTGTGAAAATGTGTCCGATATCATTTGATACGGTTTAAAGTAGATTTTGATATTGCCAAACACGGACTATAAACGTGGAACCAACCACAATTCCATATCGTTTTGTTATCGGGTCTAGTAAAGtaagttagctggttagctaaaGCCTAGCTTACTGATTTAGCTAGTTTTCAAATAGTTCTGTATAGAAAGCATTCAGCTATCTAGCTAATGTGAACTCGTGGTGAACGGTCAGTGGAATGAAAACGGTGATGTCAGAATAATCTGCTATAATTCAGTGCTCTAACTACATAATTCCTAGGAAGCTATAGAAGAATTCATGATGGATGAGGATTCTGCCGACCCAtccaacccccctctctcctgctccactGAACCCAACCCTCCAGAGTCACTGGTTCCTGACTCTAACCATAGAGACATCGACACCTGCAGTGAAATACCCAGATTTAACATTGTagtcaaggaggaggaggaagactggGATGTGGATAATACTGGAGAGAATCCTAACCCCAGCTCTAGTGAAGAGGCATCAGCAGAACAACACCAGGAGAATCCTAACTCCAGCTCTAGTGAAGAGGCATCAGCAGAACAACACCAGGAGAATCCTAACTCCAGCTCTAGTGAAGAGGCATCAGCAGAACAACACCTGGAGAATCCTACGGCTAAGAAGCCATGGCGATGCCCCCAATGTGAAATAGAAATCGCTCACCCATCCAATATAAACAGACACCTAAGAACACACACAAAACCTGCTAAGGAGTCTTCCGTCTGTCCAGTATGTGGAAAAGACTTTGTTCACCCCTCCAAACTGAAGAGACACTGCCgaacacatacaggagagaagccttaccagtGCTCTGTGTGCGGGAAGCGATTCACACTGAAGCCCCACCTGGAAAGACATCAGATGACCCACCCTGGAGAGAAACAGCCAGACGCGACAAAGAAGCACCCGTGCTCCGATTGTGGAAAGGAATGTTTCTCTGCATATGAACTGAAGATGCACATGAGAAAGCACACAGGGGAGAGACCTCACCAGTGCTCCTACTGCGAGATGAGCTTTGGCTGTAAGGGAACTCTATCGAGACACGTACGACGCCATACAGGAGCACCCACACCAAAACCTTACCAATGCTCACAGTGTGGGAAGAGATACGAGTCACCGTCGAGGCTCAGGCAGCATCAGACTgtgcacactggagagaaaccttacgaGTGCTCTGATTGCGGGAGGGGTTTCGCTTCGACCGAAGGTCTTCGCAAACATCAATGCAGTCATGCCAGTAACCATAGCAACCAGTGTACACTGGGAATTCGAGATACGGCATCATCGGGCAGTCAAACTATGAATATCAAGATCGAAGACGAGGAACAGGAGCTGGCAATTAATgtcaatgaggaggaggaggaaattgTTGTTTTTGTCAATGGTGATAAAGAAACCTTACCAGTGTACCACCTGTAATCAGAGCTTTGTTCACCCTAGCTCTCTAGCAAGACACAAACAATCCCACACTAGTGTCACGCAGTACAGCTATTCAGAATGTGGGAAGGAATTCAGCCAATCGTGGACTTTCAAGATACACATGCAACAGCATACCGGAGAGCACCCGTACCACTGCTGTCAGTGTGATAAGAGTTTCTCAGCTTTTGCACTTCTCAGAAGACACCAGATAGTTCACACTAGGGTGAAACCTTACCCCTGCTCTCTCTGTAGGAATAGATTCTCCCTCGTCAGCAAACCGATCCAGTCAAAGACATCATGTCCTTGCCAAAAAATGTAGCTGCTTCTTCCCTGAACCAATCTCGTGGACAGGGATCACAACAGCAGGTGTCTATTCTAGTACCGTATGTCAAAGTGAAAGAGAAGAAGGAGGATCCTGCTTTTGTGAGCTAAAGCGTTTATTTTGTACTATTGCTTAGATATTTAATGGGCCCATACTTGCGACCTCTTGCTTAAACTTAGGCTTAGTTTCTTGAGAACTCTTGCTTAAGCTTTTCCCATTAAATAATGTAGCCCTATGCTAACACGACCAGCTGACAGCATGAGAAAACGTAGCCCTATGCTAACACAACCAGCTGATAGCATGAGAAAACATAGCCCTGTGCTAACACAACCAGCTGAAAGCATGAGAAAACGTAGCCCTATGCTAACACGACCAGCTGATAGCATGAGAAAACGTAGCCCTATGCTAACACAACCAGCTGATAGCATGAGAAAACGTAGCCCTATGCTAACACGACCAGCTGACAGCATGAGAAAACATAGCCCTGTGCTAACACAACCAGCTGATAGCATGAGAAAACGTAGCCCTGTGCTAACACAACCAGCTGATAGCATGAGAAAAGTAGCCCTGTGCTAACACGACCAGCTGACAGCATGAGAAAACGTAGCCCTGTGCTAACACACTGGATAGAAACCTTATGCCTGCCCCGACTGTGACAAGAGCTTTGCTTTCGCCTCAGCCTTGAAAAGACACCATAAgttacacacaggagagaaaccccactcctgctctgtgtgtgggaagagttttactcaatCATCCACCTTGAAGGATCACTTCAGGACGCATTCAGGAGAGAAACCCTGCTCTGTCTGCCGTGTTTTAGTTATCCAAGATCCTTTTAAGCTCCAATGCCTGaaactcgagacgccgggtgaggggcctacagtacctcgtggactgggaggggtacgcaTTCAGGAGAGAAACCCTGCTCTGTCTGCCGTGTTTTAGTTATCCAAGATCCTTTTAAGCTCCAATGCCTGAAACACTCCAATGCCTGaaactcgagacgccgggtgaggggcctacagtacctcgtggactgggaggggtacgcaTTCAGGAGAGAAACCCTGCTCTGTCTGCCGTGTTTTAGTTATCCAAGATCCTTTTAAGCTCCAATGCCTGaaactcgagacgccgggtgaggggcctacagtacctcgtggactgggaggggtacgcaTTCAGGAGAGAAACCCTGCTCTGTCTGCCGTGTTTTAGTTATCCAAGATCCTTTTAAGCTCCAATGCCTGAAACACTCCAATGCCTGAAACTCGAGACGCCGGAtgaggggcctacagtacctcgtggactgggaggggtacggtccggaggagaggtgctgggtatccggtgggggacattttggacccttcACTTCTGAGGgacttccaccgcctccacccggatcgacCGGcacctcgcccccccccccccgggtcgCCCACGGGGCCGGTGGCGGCGCGCTCCGGGAGCCGtgcgtcggggggggggggggggtactgtcacgactcccctgcctgttcgggcggggctcggcggtcgtcgtcaccggcctactagccgtcaccgatccctttttcattTTCTGTTAGTTTAGTCTTATGAGTTGCACCTGTTCCTATTTGTGTTTTCTTGATTTTCTAGCCTATTTTAGCTTGTTAGGATCTAGTTTGTGGGGGATTATTTTGTGTTCACGTTTAGTGTTGGCTGTGGTTTTGTGCTCCGGaccgtgttttgggttggtcagtgttttcagccctgtgttttgggttggtcagtgttttcagCCCTGTGTttggggttggtcagtgttttcctcCCTGTGTTCTGGGTAGGTCAGTGTTTTCAGCCCTGTGTtctgggttggtcagtgttttcctcCCTGTGTTTGGGCATGACCGTTTGTGCCGGAAATAAAGTGCCTATTTTACTtgaactctctgctctctgcaccTGACTTCTTTCTACCTTCCACTCCTATTCATCCGTGacaaagcatttttctacggctggccatgctttccacctggctactcctaccccggtcaacagcactgcaccccccacagcaactcgcccaagccttccccatttctccttctcccaaatccagtcagc
>TU1614886
ACCAACCACAATTCCATATCGTTTTGTTATCGGGTCTAGTAAAGtaagttagctggttagctaaaGCCTAGCTTACTGATTTAGCTAGTTTTCAAATAGTTCTGTATAGAAAGCATTCAGCTATCTAGCTAATGTGAACTCGTGGTGAACGGTCAGTGGAATGAAAACGGTGATGTCAGAATAATCTGCTATAATTCAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948513.1 False 3953 mRNA 0.49 3 1166086 1173984
TU1614886 True 200 lncRNA 0.38 1 1166198 1166397
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110516881 LOC106595542 coding upstream 7439 1142087 ~ 1158647 (+)
LOC110485352 LOC106594003 coding upstream 90970 1069986 ~ 1075471 (+)
LOC110485350 LOC106593608 coding upstream 102762 1053813 ~ 1063324 (+)
LOC110485351 LOC106593629 coding upstream 112598 1047782 ~ 1053488 (+)
LOC118940177 LOC106595452 coding upstream 399787 663730 ~ 766299 (+)
LOC110493374 LOC106595501 coding downstream 3818 1177802 ~ 1209158 (+)
LOC110494868 LOC106564131 coding downstream 45647 1219631 ~ 1249233 (+)
LOC110515478 LOC106595381 coding downstream 89812 1263796 ~ 1309357 (+)
LOC118940052 LOC106595394 coding downstream 150961 1324945 ~ 1343422 (+)
LOC110517405 LOC106595394 coding downstream 169369 1343353 ~ 1361846 (+)
G1412954 NA non-coding upstream 8648 1157172 ~ 1157438 (+)
G1412953 NA non-coding upstream 13253 1152410 ~ 1152833 (+)
G1412952 NA non-coding upstream 17241 1148419 ~ 1148845 (+)
G1412948 NA non-coding upstream 24112 1141728 ~ 1141974 (+)
G1412964 NA non-coding downstream 15217 1189201 ~ 1189981 (+)
G1412965 NA non-coding downstream 30540 1204524 ~ 1204782 (+)
G1412989 NA non-coding downstream 63983 1237967 ~ 1239293 (+)
G1412999 NA non-coding downstream 94219 1268203 ~ 1268914 (+)
G1412947 LOC106596877 other upstream 25777 1139800 ~ 1140309 (+)
G1412926 NA other upstream 67472 1098246 ~ 1098614 (+)
G1412853 NA other upstream 170797 994716 ~ 995289 (+)
G1412594 NA other upstream 531998 627262 ~ 634088 (+)
G1413121 LOC106595424 other downstream 483177 1657161 ~ 1679798 (+)
LOC110493359 LOC106564044 other downstream 1017020 2191004 ~ 2199748 (+)
LOC110514702 LOC106603759 other downstream 1031022 2204951 ~ 2277856 (+)

Expression

LOC110515042(LOC106564127) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.75.
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LOC110515042(LOC106564127) Expression in each Bioproject

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LOC110515042(LOC106564127) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Co-expression Network