LOC110493359 (LOC106564044)


Basic Information

Item Value
gene id LOC110493359
gene name LOC106564044
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 2191004 ~ 2199748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567625.2
gaggaggagaagagaagaaaggatcagatttgactcatcaaagagagagaccagactcggaggaaccagagccagatatgtccaaaccagcaagacgacaccagtgctcccagtgtggaaagggttttaaccAGAAAGGACACCTGAACCAACATGAGAAAATACACacgggggagaagccttaccactgctctcagtgtggaacGGGTTGTAACGGGTTAAgggacctgaaacaacatgagagaatacacacaggggagaagccttacctctgctcccagtgtggaaagagttttaccctgttatgtaacctgaaaacacacgagagaatacacacaggggagaagccttaccactgctctcagtgtggaaagagttttaaccagaAAGGACACCTGAAGCAACATGGGAGAATACACACatgggagaagccttaccactgttccCAGTTTGGAACAGGTTGTAACCAGTTAAGGGACCTGAAACGACCTGAGAGATTACACAAAGGTGAGAAGCCTTACCATTGCTCCcggtgtggaaagagttttacaacAATAGGGACACTGAAAATTCacgagagaatacatacaggagaAAAGCCGTAccattgctcccagtgtggaaagagttttacaacATTATGGAGCCTGAAAATACACGAGAGAATGCATACAGGAGAAAAGCCGTACCACTGCTCCAAGTGTGGAAAGCGTTTTACCCACTTAAGTAATCAGAaaaaacatgagagaatacacacaggggagaagccttaccgctgctcccagtgtggaaagagatttaGCGAGTTAGGAAGCCTGATGGctcatgagcgaatacacacaggggagaagccttacaaaTGCTCAGACTGTGGGAAGACATATTACTCATCACAGTCACTTAAAAGACATGTGagagtccacacaggggagaaaacATGAATTGAATATGGAGTATGTCAGTTTGAAAAAAGAGTAGATCAGATTCCTTGTGCTTAAATGGtcagataatcaagtgatatttggatgtgATGCATTTGCTCCATTGTTGACATTTGCATTGTCCCACTGATGATTTAATGAAATGAAATGTATCACTGACTCTAATGTAAAATGTTAATTGTATGTGTCCACATATCTGAGTATGTGACTAACCTTGTTAAACTGTCCAATTATAATCTCCTGTTCCTGGGAGTATCATCCTGCGTTGCAAACCAGCTGCACCTGCATCCTTGTCTCAATGAAGACTTGTTTGTTTTACTTTCCTGGGGTCATTTACAAGCCTCCCACTGGTTGAATTAactttgtttccacgtcatttcaacaaaacaAATCCACGTGATAGTGTTTGATTTATGTGATTTAAACTTTGAAATGCGTTTGTCAGAACCAACCTTCTGGACATGTGTAGTATTTAAGAAATCGGGGACTCGctgatctctctctgcctctctctctctctgtccccatctctctctctctctctctctccctgattcaCCAAAGGTTTTTGTTCTCTACAGTTTAACATAAACAGTATTTCCCTCCTGTCTAAAAACATACTTTTGGATTATAAacatgtcaataaaaaaagattaCTAAAGTAGCCAATGTACCTTGTCATATACATCATAACCCAGGGGTGGTCAAATTGTTGTTAGAATGTCATATACATCATAACCCAGGGGTGGTCAAATTGTTGTTAGAATGTCATACACATCATAACCCAGGGGTGGTCAAATTGTTGTTAGAATGTCATACACATCATAACCCAAGGGTGGTCAAATTGTTGTTAGAATGTCATATACATCATAACCCAGGGGTGGTTAAAATTGTTGTTAGAATGTCATATACATCATAACCCAGGGGTGGTCAAATTGTTGTTAGAATGTCATATACATCATAACCCAGGGGTGGTTAAAATTGTTGTTAGAATGTCATATACATCATAACCCAGGGGTGGTCAAATTGTTGTTAGAATGTCATATACATCATAACCCAGGGGTGGTCAAATTGTTGTTAGAATGTCATATACATCATAACCCAGGGGTGGTCAAATTGTTGTTAGAATGTCATATACATCACATAACAAATGT
>TU1616141
tgagtggaactgtgagaggaggagaagagaagaaaggatcagatttgactcatcaaagagagagaccagactcggaggaaccagagccagatatgtccaaaccagcaagacgacaccagtgctcccagtgtggaaagggttttaaccAGAAAGGACACCTGAACCAACATGAGAAAATACACacgggggagaagccttaccactgctctcagtgtggaacGGGTTGTAACGGGTTAAgggacctgaaacaacatgagagaatacacacaggggagaagccttaccgctgctcccagtgtggaaagagatttaGCGAGTTAGGAAGCCTGATGGctcatgagcgaatacacacaggggagaagccttacaaaTGCTCAGACTGTGGGAAGACATATTACTCATCACAGTCACTTAAAAGACATGTGagagtccacacaggggagaaaacATGAATTGAATATGGAGTATGTCAGTTTGAAAAAAGAGTAGATCAGATTCCTTGTGCTTAAATGGtcag

Function

NR:

description
PREDICTED: zinc finger protein 239-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567625.2 False 2095 mRNA 0.41 2 2191019 2199748
TU1616141 True 517 TUCP 0.46 3 2191004 2198659

Neighbor

gene id symbol gene type direction distance location
LOC110495015 LOC106564069 coding upstream 187750 1985862 ~ 2003269 (+)
LOC110495010 LOC106564036 coding upstream 201402 1969558 ~ 1989617 (+)
LOC110493345 LOC106564071 coding upstream 227086 1949482 ~ 1963933 (+)
LOC110493344 LOC106564070 coding upstream 242739 1943925 ~ 1948280 (+)
LOC110493357 LOC106564074 coding upstream 249525 1937234 ~ 1941494 (+)
LOC110514702 LOC106603759 coding downstream 5203 2204951 ~ 2277856 (+)
LOC118940187 NA coding downstream 112403 2312151 ~ 2319393 (+)
LOC110511903 NA coding downstream 153714 2353462 ~ 2359837 (+)
LOC110517555 LOC106574389 coding downstream 682167 2881915 ~ 2907090 (+)
LOC118940194 LOC106595271 coding downstream 711332 2911080 ~ 2924419 (+)
G1413829 NA non-coding upstream 905 2189894 ~ 2190114 (+)
G1413828 LOC106595012 non-coding upstream 2620 2187709 ~ 2188399 (+)
G1413722 LOC106590947 non-coding upstream 12909 2168740 ~ 2178110 (+)
G1413723 NA non-coding upstream 35451 2091993 ~ 2155568 (+)
G1413721 NA non-coding upstream 36547 2136710 ~ 2154472 (+)
G1413845 NA non-coding downstream 2255 2202003 ~ 2203949 (+)
G1413887 NA non-coding downstream 105869 2305617 ~ 2335167 (+)
G1413896 NA non-coding downstream 135531 2335279 ~ 2348225 (+)
G1413981 NA non-coding downstream 167991 2367739 ~ 2368260 (+)
G1413986 NA non-coding downstream 213771 2413519 ~ 2414811 (+)
G1413121 LOC106595424 other upstream 511221 1657161 ~ 1679798 (+)
LOC118940052 LOC106595394 other upstream 850921 1324945 ~ 1343422 (+)
LOC110494868 LOC106564131 other upstream 948717 1219631 ~ 1249233 (+)
G1412947 LOC106596877 other upstream 1050710 1139800 ~ 1140309 (+)
G1412926 NA other upstream 1092405 1098246 ~ 1098614 (+)
G1414065 NA other downstream 462422 2662170 ~ 2690141 (+)
LOC118940192 NA other downstream 789161 2988823 ~ 2992650 (+)
LOC110513329 LOC106595349 other downstream 1079899 3279105 ~ 3288531 (+)
LOC118940198 LOC106593831 other downstream 1155413 3355122 ~ 3359173 (+)

Expression

LOC110493359(LOC106564044) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

LOC110493359(LOC106564044) Expression in each Bioproject

Bar chart with 21 bars.
LOC110493359(LOC106564044) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network