LOC110514117 (LOC106593138)


Basic Information

Item Value
gene id LOC110514117
gene name LOC106593138
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 2698595 ~ 2707054 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948604.1
AATAAAATCTAAAAGAAGAAAGACAACAACAGCTGGTCAGCCATCTCCGTAGCTTGCTAACCAACATAGCGGAACCGCCCCATCTCTTTAGACGCTTTCTGGTATATGAGCCACTCTGTTTTGAACACATTTCTGTCGTTTAGCTAATTATCTCATTTAATTTCCTATTTACCTTGTTATTAGTCAGCTAGCTGGCTTgttaagttagcattagcctagctagctaactgttagcTAACATCCCCCGACCATGAGTTCACCAAGCTACTCTCCTCCTGATGAAGAGGAgggggtctgctggacggagaaagagggTCTGTGGCTGAATGTTGTCGTGAAAGAGGAGAATcaagaggaggatgttacagtaaaacaagaagtagaggaagaggaggctgttaccatacaaaaacaagtagagggtgagtctgttacagtgaaagaagaagagaaagacgtttcagtgaaagaagaggaagacccGATCAGAGTGAAAGAAGAAGATGAGGATGTGACTGTAAAAGAAGAGGAGGTTGCAGTTTttggagtgaaggaggagaaagagggagagataactGTCATATTGGAAGAGGAGTCGGGAGATCTGATTAACACCGgagagagactgaactATCGTGGATcttctggggagcctcaacaacctcatgacGCTGAAGAGGCAGAGACGAGtttctccagatcagaacacctcaagaaacaccagcagagaccGTCAGAGAAGAAACCTCaccgctgctctgactgtgggaagagtttcagctCTTCTTCAGATCTTAAAATACACCAGAGAATccatacaggagagaaaccttacagctGCTCCGACTGTGCAAGGAGTTTTACTACACGTAGTCAGATGATATCTCataggagaacacacacaggagaaaaacctTTCAGCTGTGATcgatgtgggaagagttttgctcaGTCAGGCAACCTGACaattcaccagagaacacacacgggtgagaaaccttaccactgctctgactgtggaatgAGTTTTACTACCTCAGGTGgactgatatcacaccagagaacacatacaggagatcagtgtgggaagagttttcctGCCGCAAGGAACCTGAATCTAGTTcaccagagagagaacacagctgATCTGACTGTACACCAGAGAAGCTACACTGTAGAGAAACCATACCATTGCTCAGACTGTGGGATGAGTTTTACTACATCAAGTGgactgatatcacaccagagaatccacactggagagaaactATACCACTGCTCAGATTGTGGGATGAGTTTTGCTGGATTAGACAAACTGACTGTACACCagaggttacacacagagaggacTTTTagttgtgatcaatgtgggaaaaaCTTTGCTGCAGCAACAAACCTGAtagttcaccagagaacacacacgggagagaggccttatagctgtgatgaatgtgggaagagattcactCAGTCAGCACACCTGACTGTACACCAGAGAACCCACACGGGAGAGCAGCCTTATAGCTGCGATCAATGTGGGAAACATTTTGCTTTGCCAGGAAACCTGACTGTACACAAGAGAAcacacaccggagagaaaccttacagctGTGATGTATGTGAGGATAGTTTTGCCACCTGGACTGCCCTGGCTACACACAAACGAATCCACACAGGTGAGAAACCGTACCACTGCTCCGACTGTGGAATGAGCTTTACTTCCTCAAGCGACTTGAGAAGacaccagagaaaacacacaggagagaaaccttacagctgtgatcagtgtgggaagagctttatTCGCTCAGACTCCCTGGCAAAACACAAGAAAATACATGCAGGAGCCACAGACCTGGGTAGTGGAACACAGAGTGTGGAAtgatctccaacaccagacctgggtagtagaacacagagtgtagaatgatctccaacaccagacctgggtagtagaacacacaGTGTTGAATGTCTACTACAGAGTACAGAATgaactccaacaccagacctgggtagtagaacacacaGTGTTGAATGTCTACTACAGAGTACAGAAtgatctccaacaccagacctgggtagtagaacacagagtgtagaatgatctccaacaccagacctgggtagtagaacacacaGTGTTGAATGTCTACTACAGAGTACAGAATgaactccaacaccagacctgggtagtagaacacacaGTGTTGAATGTCTACTACAGAGTACAGAATGacctccaacaccagacctgggtagtagaacacacaGTGTTGAATGTCTACT
>XR_005036735.1
AATAAAATCTAAAAGAAGAAAGACAACAACAGCTGGTCAGCCATCTCCGTAGCTTGCTAACCAACATAGCGGAACCGCCCCATCTCTTTAGACGCTTTCTGGTATATGAGCCACTCTGTTTTGAACACATTTCTGTCGTTTAGCTAATTATCTCATTTAATTTCCTATTTACCTTGTTATTAGTCAGCTAGCTGGCTTgttaagttagcattagcctagctagctaactgttagcTAACATCCCCCGACCATGAGTTCACCAAGCTACTCTCCTCCTGATGAAGAGGAgggggtctgctggacggagaaagagggTCTGTGGCTGAATGTTGTCGTGAAAGAGGAGAATcaagaggaggatgttacagtaaaacaagaagtagaggaagaggaggctgttaccatacaaaaacaagtagagggtgagtctgttacagtgaaagaagaagagaaagacgtttcagtgaaagaagaggaagacccGATCAGAGTGAAAGAAGAAGATGAGGATGTGACTGTAAAAGAAGAGGAGGTTGCAGTTTttggagtgaaggaggagaaagagggagagataactGTCATATTGGAAGAGGAGTCGGGAGATCTGATTAACACCGgagagagactgaactATCGTGGATcttctggggagcctcaacaacctcatgacGCTGAAGAGGCAGAGACGAGtttctccagatcagaacacctcaagaaacaccagcagagaccGTCAGAGAAGAAACCTCaccgctgctctgactgtgggaagagtttcagctCTTCTTCAGATCTTAAAATACACCAGAGAATccatacaggagagaaaccttacagctGCTCCGACTGTGCAAGGAGTTTTACTACACGTAGTCAGATGATATCTCataggagaacacacacaggagaaaaacctTTCAGCTGTGATcgatgtgggaagagttttgctcaGTCAGGCAACCTGACaattcaccagagaacacacacgggtgagaaaccttaccactgctctgactgtggaatgAGTTTTACTACCTCAGGTGgactgatatcacaccagagaacacatacaggagatcagtgtgggaagagttttcctGCCGCAAGGAACCTGAATCTAGTTcaccagagagagaacacagctgATCTGACTGTACACCAGAGAAGCTACACTGTAGAGAAACCATACCATTGCTCAGACTGTGGGATGAGTTTTACTACATCAAGTGgactgatatcacaccagagaatccacactggagagaaactATACCACTGCTCAGATTGTGGGATGAGTTTTGCTGGATTAGACAAACTGACTGTACACCagaggttacacacagagaggacTTTTagttgtgatcaatgtgggaaaaaCTTTGCTGCAGCAACAAACCTGAtagttcaccagagaacacacacgggagagaggccttatagctgtgatgaatgtgggaagagattcactCAGTCAGCACACCTGACTGTACACCAGAGAACCCACACGGGAGAGCAGCCTTATAGCTGCGATCAATGTGGGAAACATTTTGCTTTGCCAGGAAACCTGACTGTACACAAGAGAAcacacaccggagagaaaccttacagctGTGATGTATGTGAGGATAGTTTTGCCACCTGGACTGCCCTGGCTACACACAAACGAATCCACACAGGTGAGAAACCGTACCACTGCTCCGACTGTGGAATGAGCTTTACTTCCTCAAGCGACTTGAGAAGacaccagagaaaacacacaggagagaaaccttacagctgtgatcagtgtgggaagagctttatTCGCTCAGACTCCCTGGCAAAACACAAGAAAATACATGCAGGAGCCACAGACCTGGGTAGTGGAACACAGAGTGTGGAAtgatctccaacaccagacctgggtagtagaacacagagtgtagaatgatctccaacaccagacctgggtagtagaacacagagtgtagaatgatctccaacaccagacctgggtagtagaacacacaGTGTTGAATGTCTACTACAGAGTACAGAATgaactccaacaccagacctgggtagtagaacacacaGTGTTGAATGTCTACTACAGAGTACAGAATGacctccaacaccagacctgggtagtagaacacacaGTGTTGAATGTCTACT

Function

NR:

description
zinc finger protein 271-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948604.1 False 2289 mRNA 0.46 2 2698595 2707054
XR_005036735.1 True 2157 mRNA 0.46 3 2698595 2707054
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Neighbor

gene id symbol gene type direction distance location
LOC110515691 NA coding downstream 8165 2680675 ~ 2690430 (-)
LOC118940184 LOC106591209 coding downstream 56058 2555143 ~ 2642537 (-)
LOC110511869 LOC105029636 coding downstream 203961 2404432 ~ 2494634 (-)
LOC118940186 LOC106612417 coding downstream 348307 2330274 ~ 2350288 (-)
LOC118940185 LOC106612417 coding downstream 390077 2301269 ~ 2308518 (-)
LOC118940053 NA coding upstream 5576 2712630 ~ 2713738 (-)
LOC110516499 LOC106563979 coding upstream 6502 2713556 ~ 2723485 (-)
LOC110511979 LOC106594716 coding upstream 34041 2741095 ~ 2773447 (-)
LOC110516478 LOC106564555 coding upstream 75282 2782336 ~ 2792008 (-)
LOC118936352 LOC106593206 coding upstream 94323 2801377 ~ 2810350 (-)
G1414975 NA non-coding downstream 44488 2648920 ~ 2654107 (-)
G1414972 NA non-coding downstream 82036 2616322 ~ 2616559 (-)
G1414971 NA non-coding downstream 84361 2613797 ~ 2614234 (-)
G1414956 NA non-coding downstream 176746 2521335 ~ 2521849 (-)
G1415049 NA non-coding upstream 52950 2760004 ~ 2808498 (-)
G1415061 NA non-coding upstream 73405 2780459 ~ 2782045 (-)
G1415084 NA non-coding upstream 141444 2848498 ~ 2848977 (-)
G1415093 NA non-coding upstream 165388 2872442 ~ 2882757 (-)
G1413766 LOC106564079 other downstream 636901 2044580 ~ 2061694 (-)
LOC110495385 LOC106564038 other downstream 660275 2028927 ~ 2038594 (-)
G1413673 NA other downstream 687236 2009680 ~ 2011972 (-)
LOC110519887 NA other upstream 402096 3107213 ~ 3113094 (-)
LOC110500804 NA other upstream 682221 3388852 ~ 3391857 (-)

Expression

LOC110514117(LOC106593138) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110514117(LOC106593138) Expression in each Bioproject

Bar chart with 21 bars.
LOC110514117(LOC106593138) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40.
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Co-expression Network