Fish Transcriptome and Expression Database

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model fish

XLOC_033135 (CABZ01055240.1)

Basic Information

Item	Value
gene id	XLOC_033135
gene name	CABZ01055240.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007117.7
NCBI id	CM002890.2
chromosome length	60270059
location	47156302 ~ 47156416 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064391
atttacagccatatcacccagcaGCAAGacaggttactcactgaagctgagcagggctgagcttggtcagtacctggatgggagaccacatgggaaaactaggttgctgttgaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000109913

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00064391	True	115	rRNA	0.50	1	47156302	47156416

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_033133	igfn1.1	coding	downstream	215057	46878889 ~ 46941245 (-)
XLOC_033132	igfn1.3	coding	downstream	280992	46843592 ~ 46875310 (-)
XLOC_033131	igfn1.4	coding	downstream	366260	46771654 ~ 46790042 (-)
XLOC_033130	igfn1.2	coding	downstream	388262	46743246 ~ 46768040 (-)
XLOC_033129	zgc:66479	coding	downstream	413847	46736251 ~ 46742455 (-)
XLOC_033136	im:7151449	coding	upstream	327668	47484084 ~ 47506351 (-)
XLOC_033137	magi3b	coding	upstream	373465	47529881 ~ 47796989 (-)
XLOC_033138	AL929512.1	coding	upstream	446183	47602599 ~ 47602715 (-)
XLOC_033139	lrig2	coding	upstream	653339	47809755 ~ 47840465 (-)
XLOC_033140	RAP1GAP	coding	upstream	712981	47869397 ~ 47953829 (-)
XLOC_033123	CU041346.1	non-coding	downstream	846291	46294361 ~ 46310011 (-)
XLOC_033121	BX005101.1	non-coding	downstream	904362	46168017 ~ 46251940 (-)
XLOC_033122	BX005101.2	non-coding	downstream	928070	46228117 ~ 46228232 (-)
XLOC_033118	NA	non-coding	downstream	1227127	45923942 ~ 45929175 (-)
XLOC_033111	NA	non-coding	downstream	3153760	43979711 ~ 44002542 (-)
XLOC_033141	NA	non-coding	upstream	822889	47979305 ~ 48061659 (-)
XLOC_033145	CU469362.1	non-coding	upstream	1223829	48380245 ~ 48381223 (-)
XLOC_033148	CU137649.1	non-coding	upstream	1455618	48612034 ~ 48612150 (-)
XLOC_033149	NA	non-coding	upstream	1758452	48914868 ~ 48949515 (-)

Expression

Co-expression Network