LOC110513170


Basic Information

Item Value
gene id LOC110513170
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 2818436 ~ 2833792 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948618.1
ccaaatacttttagacttttactcgagtagtattttactgggtgactttcacttttacttgagtcattttctagtactttttccaccactgtcaaaATATTTGTGGCCCGTTGCCATGAGAACAGGGCAACCAGTGgaacacaaacaacattgtaaataccacgtatatttatttgtttatttatttacatacTATTCGTACTACATCTATTTGCACATTGCTAAAACACTGGTAATATAACACTTGAAATGTATTTGAGATGTTTCCATTTGTTGTTTgggttgtttttttattttttatttattttatttcacctttatttaaccaggggggctagttgagaacaagttctcatttgcaactgcgacctggccaagataaagcatagcagtgtgaacagacaacacagagttacacatggagtaaacaagtcaataatacagtagaaaaaaggagagtctatatacattgtgtgcaaagaGGCATATTGTCATCTCAATTTTGTTTCCATGGCAATAAAGTCCATTTGAAATTAATTCCCTTTATGTACGTTTCATATAATGTTATAATATTATGattgaaatcaaataaaaacaatcGTTAAAAAGTGATTCACTTTTTGCATCAAattttaaataaacattttactcaactgcgttacccactccagtcagcagatggcggtcTGGGAATTTATGGTTATGCTGTTGGTGTGACGTATAATGtagtggacggaacgcttctttcaacagcagcaacagttcGTCAGACAgctcggtagcttgctagacaaaaTAGACGAACCAATATAGCTCTTTCGACGCTTTGGTGTATATTAGCCACTGTGTTTTAAACAGACTTCTGTCGTCTAGTTAGTTATccgatttaatttcatatttacgTTGTTATTGgtcagctagctggctggctaagttagctttagcctagctagctaactgttagcTAACATCACCGACCATGAGCTCCCTAAACTACTCTCCTCCTGTTGgagaagaggaggtctgctggacggagaaagagggTCGGtggctgaacattgtcgtgaaagaggaggaggaagaggaggatgtcacAGTAACAAAAGTAGAGGAagtggaggatgttacagtaaaacaagaagtagagTGTGAggatgttacagtgaaagaagaggaagacgcgttcagagtgaaagaggaggtagatattacagtaaaagaagaggagggagagataactGTCATattggaagaagaagaagaggttggagaactgattaacaccagagagagacaagactatcgtggatcctctggggagcctcaacaacatcatgatcctgacgaggcagagaagagtctctccacatCAGAACTCCTCAATAAACCCcagcagagacccacagggaagaaaTATCACCACTGCccagactgtgggaagagttactCAAGATCAGATTCACTAAAAGTACACCTGAGAATtcatacaggagagaaacctcactgctgctctgactgtgggaagagatttaccTCTTCAGCAGACCTTAAAAGACATGAGAGAATCCATACAGGAGAaaaaccttatagctgtaatcaatgtgggaagagtttcacaaCATCTAGCCAGctgactatacaccagagaacacacacaggagagaagccttaccactgttctGACTGTGGAAAGCGTTTTCTTAAGTCAGGACATTTaaaatcacaccagagaacacacacagtagagaaaccttatagctgtgatcaatgtgggaagagttttactcactCAAGCTGCCTGAtagtacaccagagaacacacacaggagagaaaccttatagctgtgatcagtgtgagaAGAGTTTTGTTACTTCTAGCCGTCTGACTATACAccggagaacacacacaggagagaaaccttatggctgtgatcaatgtgggaagagttttgttacaTCTAGCAGTTTGATTATACACCAGcggacacacaggagagaaatcaaTGTGGCAAGAGATACTCTGGTAAAAAATCTCTGATTAACTATCAGAAAAtacagcctcccgagtggcgcagtggtctaaggcatcgtagtgctagctgtgccactagagatcctggttcgaggcTCTGGGCTGGTGGAATAgattcccagtgtggaaagagggTTCAGTCAGTTAGGGAACCTAATTGTGGAAAGACATTTTCTAGGACACAGGACCTAAAATAAGACAATATAGATGCTGTGTTCTGACAAGTTTTTGGCTGAGAATGTTGTTGATGCCTGAAAACACATGAGAGGGAACACACAGTAGAAAAACCTGTCCAATGTTCCACTAtgataatgttgttgatgtgaaaTCATGTTTGAATGAAAATCTTACTAAAACAAAAA

Function

NR:

description
gastrula zinc finger protein XlCGF17.1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948618.1 True 2394 mRNA 0.40 2 2818436 2833792

Neighbor

gene id symbol gene type direction distance location
LOC118936352 LOC106593206 coding downstream 8330 2801377 ~ 2810350 (-)
LOC110516478 LOC106564555 coding downstream 26428 2782336 ~ 2792008 (-)
LOC110511979 LOC106594716 coding downstream 44989 2741095 ~ 2773447 (-)
LOC110516499 LOC106563979 coding downstream 94951 2713556 ~ 2723485 (-)
LOC118940053 NA coding downstream 104698 2712630 ~ 2713738 (-)
LOC118940191 LOC106593538 coding upstream 1405 2835197 ~ 2840122 (-)
LOC110511975 LOC106592651 coding upstream 15559 2849351 ~ 2850793 (-)
LOC118940054 NA coding upstream 122836 2956628 ~ 2957627 (-)
LOC118940193 NA coding upstream 135969 2969761 ~ 2976637 (-)
LOC118936434 NA coding upstream 203832 3037624 ~ 3044905 (-)
G1415049 NA non-coding downstream 9938 2760004 ~ 2808498 (-)
G1415061 NA non-coding downstream 36391 2780459 ~ 2782045 (-)
G1414975 NA non-coding downstream 164329 2648920 ~ 2654107 (-)
LOC118940184 LOC106591209 non-coding downstream 176203 2555143 ~ 2642537 (-)
G1415084 NA non-coding upstream 14706 2848498 ~ 2848977 (-)
G1415093 NA non-coding upstream 38650 2872442 ~ 2882757 (-)
G1415094 NA non-coding upstream 40684 2874476 ~ 2877520 (-)
G1415098 NA non-coding upstream 52258 2886050 ~ 2888464 (-)
G1415101 NA non-coding upstream 68370 2902162 ~ 2905404 (-)
LOC110511869 LOC105029636 other downstream 403713 2404432 ~ 2494634 (-)
LOC110519887 NA other upstream 275358 3107213 ~ 3113094 (-)
LOC110500804 NA other upstream 555483 3388852 ~ 3391857 (-)
G1415450 LOC106594479 other upstream 957331 3776397 ~ 3914299 (-)
LOC110487340 LOC106595892 other upstream 1088790 3890766 ~ 3955806 (-)
LOC118940062 LOC106594488 other upstream 1127254 3961026 ~ 3967368 (-)

Expression

LOC110513170 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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LOC110513170 Expression in each Bioproject

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LOC110513170 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Co-expression Network