LOC110513329 (LOC106595349)


Basic Information

Item Value
gene id LOC110513329
gene name LOC106595349
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 3279105 ~ 3288531 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948620.1
tggcgatgagcGTCTTTCAGGCGACGCTGccagtgtgacgtataatctagtggacgggacgtttcttcaacaacaacaacagctggtcAGACACCTCGGTAGCTTTCAAGACAAAATAGTCGTTGTTTAGTTGCACCTGTGTTTTAAAAATACGTATGTCTTATTGCTAGCTAGTTTCCCCATTTAATTTCATATATACGTTGTTAGGTAGCTGGCTTGATAAATGAGCTTATCAATAGGCTAACGaacgctagctagttagctaacattcccgaccatgagttcactaagctactctcctcctgataaagaagaggaggtctgctggacggagaaagaagcgctggtgaaagaggaggaggaagaggaggatgttacaaTAGAAAAACAAGTAGAGGATGAGGctgttactgtgaaagaagaagagaaaggcgtttcagtgaaagaagaggaagacgcgttcagagtgaaagaggaggaggatgttacagtaaaagaagaggaggaagagagagaggaggatgcagttttttgggtgaaagaggaggaggaggatgagatgactgtcacattgaaagaggaggagacaggagatctGATTAAGACCcgagagagaccagactctcCCTCTGACAGCGGGAAGAGTCCTTCAGGGGAACCAGACCCAGAGACGCCCAAACCAGCCAAACGACATCACTGCTCGCACTGCGGAAAGAGTTTTACTAAGTTACGAAACCTAAAagagcatgagaggacacacacaggagaaaagcctttccaatgctcccagtgtggaaatagTTTTAGTCAGTTAGGTAGCCTGAAAATACACAAGAGAATACactctggagagaagccttaccactgctcccattgtGGATTGACTTTTACCTGGTTAGGGAGCCTGAAgtcacatgagagaatacacacaggagaaaagccctaCCAAtgttcccactgtggaaagagttttaggtGGTTAGAAGGCCTGACaaagcatgagaggacacacacaggagaaaagccctaccaatgctcccactgtggaaagagttttactcagttgGGGAACCTGAAATCACATCAGAGGatacatacacaggaggagaagacataccactgctctaaTTGCGGAAAGACATTTTCCCGGGCAGAggacctgaaatcacatgagagaaTAGAGAGTCTGTGTTCTGACTTGTGTTTTTGATTGAGAATTTGGGTTTTTGTTCATGCGACATTAAATCGTATTATTTATATgaaatcattttaaaaaaaagAGCTTTACTTTTGTTTGAGTTTTTTCATCTGGAGACCTGATCAtgtctaaaatcaaatcaaatattttaaaatatgtaaaaaataaaaataaaaaaaaatcttattagCTTCGATTGATTGGATGCAAAATGTCAACCCTATGATGttgtttattatattatttgCAAAATGTAAATTATTATATAAGTAAGTAGCCTTCCAGAACAGCTCATAGAAACAGGAGCCTTGTCTTGTATGATCCAgaacaaatcaaagtttatttgtcacgggAGTTaagacaacaggtgtagtagacc
>TU1616560
aggaggaggaggatgagatgactgtcacattgaaagaggaggagacaggagatctGATTAAGACCcgagagagaccagactctcCCTCTGACAGCGGGAAGAGTCCTTCAGGGGAACCAGACCCAGAGACGCCCAAACCAGCCAAACGACATCACTGCTCGCACTGCGGAAAGAGTTTTACTAAGTTACGAAACCTAAAagagcatgagaggacacacacaggagaaaagcctttccaatgctcccagtgtggaaatagTTTTAGTCAGTTAGGTAGCCTGAAAATACACAAGAGAATACactctggagagaagccttaccactgctcccattgtGGATTGACTTTTACCTGGTTAGGGAGCCTGAAgtcacatgagagaatacacacaggagaaaagccctaCCAAtgttcccactgtggaaagagttttaggtGGTTAGAAGGCCTGACaaagcatgaga

Function

NR:

description
PREDICTED: zinc finger protein 239-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948620.1 False 1577 mRNA 0.42 2 3279105 3288531
TU1616560 True 462 TUCP 0.48 2 3279647 3287958

Neighbor

gene id symbol gene type direction distance location
LOC118940058 NA coding upstream 20219 3229356 ~ 3258886 (+)
LOC118940196 LOC106591017 coding upstream 42726 3235237 ~ 3236379 (+)
LOC118940188 NA coding upstream 52641 3213831 ~ 3226464 (+)
LOC118940056 NA coding upstream 214087 3061057 ~ 3065018 (+)
LOC118940055 NA coding upstream 250247 3025954 ~ 3028858 (+)
LOC110511569 NA coding downstream 12033 3300564 ~ 3317210 (+)
LOC118940198 LOC106593831 coding downstream 66591 3355122 ~ 3359173 (+)
LOC118940199 NA coding downstream 73134 3361665 ~ 3379448 (+)
LOC110506849 LOC106591221 coding downstream 183608 3472139 ~ 3482362 (+)
LOC110506848 LOC106594001 coding downstream 198319 3486850 ~ 3492236 (+)
G1414196 NA non-coding upstream 35966 3237060 ~ 3243139 (+)
G1414262 NA non-coding upstream 72792 3135901 ~ 3206313 (+)
G1414210 NA non-coding upstream 90741 3182113 ~ 3188364 (+)
G1414182 NA non-coding upstream 130242 3148287 ~ 3148863 (+)
G1414217 NA non-coding upstream 152585 3055001 ~ 3126520 (+)
G1414310 NA non-coding downstream 17762 3306293 ~ 3308197 (+)
G1414360 NA non-coding downstream 128580 3417111 ~ 3425587 (+)
LOC118940208 NA non-coding downstream 205400 3493931 ~ 3497000 (+)
LOC118940192 NA other upstream 287466 2988823 ~ 2992650 (+)
G1414065 NA other upstream 588964 2662170 ~ 2690141 (+)
LOC110514702 LOC106603759 other upstream 1058495 2204951 ~ 2277856 (+)
LOC110493359 LOC106564044 other upstream 1080446 2191004 ~ 2199748 (+)
G1413121 LOC106595424 other upstream 1599307 1657161 ~ 1679798 (+)
LOC110506850 LOC106593733 other downstream 231089 3519620 ~ 3526117 (+)
G1414430 NA other downstream 298713 3587244 ~ 3592915 (+)
LOC118940205 LOC106585892 other downstream 382395 3670220 ~ 3678312 (+)
G1414190 NA other downstream 602232 3890763 ~ 3893220 (+)
G1414074 NA non-coding upstream 101001 2680256 ~ 3178646 (+)

Expression


Co-expression Network