LOC118940198 (LOC106593831)


Basic Information

Item Value
gene id LOC118940198
gene name LOC106593831
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 3355122 ~ 3359173 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948624.1
CAGCGGAAAGAGTCCTTCAGGGGGACCAGACACAGTGACACCCAAACCAGCGAGACGACatcactgctcccaatgtggaatgAGATTCTCCCTCTCAGGGGACCTAAAACGGCATGAGAAaaaacacacaggagaaaagcctttccaatgttcccagtgtggaaagagttttacctgtTTAGGGAATCTAAATCGGCACGAGAAGATACACtcaggagaaaagcctttccaatgttcccagtgtgaaAAGAGTTTCGCCTGGTTAAGGAGCCTGAAGAAGCATCAGAGGATACACGCAGGGGAAAAGCCTTTCCAATACCAAGGGACCAGCCAACCGTTTGATACAAGATGCAGTGgagagggACCAGACTCCCACTCTGACAGCGGGAAGAGTCCTTCAGGGGAACCAGACCCAGTGACACCCAAACCAGCGAGACGACACCACTGCTCCTACTGTGGAAAAAGTTTTACCCGATTACTACacctgaaatcacatgagagaatacatacaggagaAAAGCCCAACCACTGTTCCCAGTGTGAAAAGAGTTTTAGGTGGTTAACGACTTTGAAACtccatgagaggacacacacacacgaaaagcTCTACCGCTGCTCCCTGTGTGAAATGAGTTTTACCAAGTTAGAGGCCCTGAATGTGCATGACAGGACACACATAGGAGGGGATAAGCCCTACCGCTGCTCCCTGTGTGGACAGAGATTTAACCGGTTAAGGCATCTGAATAAGCATGAAAGAatacatacacaggaggagaagacataccactgctctcattgtggaaagacattttcccagtcagaggacctgaaaacacatgagagaatagagaggctGTGTTCTGACTTGTGTTTTTGACCTGAGAATTTTTTTTTCTGCCAAATGAAATCATTATTGAAATAGACCTACTTTTTTTGTCTTAGTTTTCATCTGGAGACtgacatgactctcctgtgaggatCCAACGATGTCTAACATACTCTGTTAcacagaatcatggctctctctctctccagatattcTGTTGCCATGACTCCTGCGAGGATCcgaggatcaggttacagtggatcAGCGTccaatagagggatggagggatatggggGTTTTATGACACCTCACCATCGATTGTAAATTGTAGGCAGCAGACTATTCCTTCTGGGGTCTAATTTGGGCGACTGGAATGTCTCTTTGTTACCGAGAGATTCTTAGACGACCCCAAAAAAAACTTCAACATCAAACAATGGACACTGGGACAATGTATTCCAACATCCGAATGTTGGGAACGATGAGAGGTGGAATATGGAAAATGTAatgtctattttgtgatgtcattaaaatggTTATAAATAGGTTTTAATGAAAGCATTAACTCCAAGAGCGTTCCCACTGTGTTTCCCACcacgtcgcccgggttagggagggcttggtcggtaggggtgtccttgagAGCTTTCCCACTGTGTTTCCCACcacgtcgcccgggttagggagggcttggtcggtaggggagAGAGCTTTCCCACTGTGTTTCCCACcacgtcgcccgggttagggagggcttggtcggtaggggtgtccttgagAGCTTTCCCACTGTGTTTCCCACcacgtcgcccgggttagggagggcttggtcggtaggggagAGAGCTTTCCCACTGTGTTTCCCACCACGTCGCCCgtgttagggagggcttggtcggtaggggtgtccttgagAGCTTTCCCACTGTGTTTCCCACcacgtcgcccgggttagggagggcttggtcggtgtCCTTGAGAGCTTTCCCACTGTGTATATCAGGTTTACATTCTTTACGTTGTGTAGAAAAATATCAAGGATAAagagaatgttttttttgtgaTGATAGGATTGTGATTTTAGTACTCTAACGAGATAGTAATTCTGATACCTTGCCTCGTAACTAGCCACGCCCCAGGGAGCCCGGAGAACGGGTCAGAATGACGAAAAAATGCCTCCGTTTTACACGAAGGTATAAAAATATTGAGTTAAGAATGATCATATCAGACTAGGACCACGAGCTGTAGCTGAGGTCTACGATTAgtcacgaccccccccccccccccccccccaccc
>TU1616764
ACCCAAACCAGCGAGACGACatcactgctcccaatgtggaatgAGATTCTCCCTCTCAGGGGACCTAAAACGGCATGAGAAaaaacacacaggagaaaagcctttccaatgttcccagtgtggaaagagttttacctgtTTAGGGAATCTAAATCGGCACGAGAAGATACACtcaggagaaaagcctttccaatgttcccagtgtgaaAAGAGTTTCGCCTGGTTAAGGAGCCTGAAGAAGCATCAGAGGATACACGCAGGGGAAAAGCCTTTCCAATACCAAGGGACCAGCCAACCGTTTGATACAAGATGCAGTGgagagggACCAGACTCCCACTCTGACAGCGGGAAGAGTCCTTCAGGGGAACCAGACCCAGTGACACCCAAACCAGCGAGACGACACCACTGCTCCTACTGTGGAAAAAGTTTTACCCGATTACTACacctgaaatcacatgagagaatacatacaggagaAAAGCCCAACCACTGTTCCCAGTGTGAAAAGAGTTTTAGGTGGTTAACGACTTTGAAACtccatgagaggacacacacacacgaaaagcTCTACCGCTGCTCCCTGTGTGAAATGAGTTTTACCAAGTTAGAGGCCCTGAATGTGCATGACAGGACACACATAGGAGGGGATAAGCCCTACCGCTGCTCCCTGTGTGGACAGAGATTTAACCGGTTAAGGCATCTGAATAAGCATGAAAGAatacatacacaggaggagaaga
>TU1616767
TATATCAGGTTTACATTCTTTACGTTGTGTAGAAAAATATCAAGGATAAagagaatgttttttttgtgaTGATAGGATTGTGATTTTAGTACTCTAACGAGATAGTAATTCTGATACCTTGCCTCGTAACTAGCCACGCCCCAGGGAGCCCGGAGAACGGGTCAGAATGACGAAAAAATGCCTCCGTTTTACACGAAGGTATAAAAATATTGAGTTAAGAATGATCATATCAGACTAGGACCACGAGCTGTAGCTGAGGTCTACGATTAgtcacgaccccccccccccccccccccccacccgtgAAACGCAACAAACGAAATAGACAACGGAACCTCTTAACAATCAATGCTACGGTTAACTAGCTGTTCTTAGTGACACCACTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948624.1 False 2120 mRNA 0.48 2 3355122 3359035
TU1616764 False 740 TUCP 0.48 2 3355161 3357694
TU1616767 True 387 lncRNA 0.43 2 3358734 3359173

Neighbor

gene id symbol gene type direction distance location
LOC110511569 NA coding upstream 37912 3300564 ~ 3317210 (+)
LOC110513329 LOC106595349 coding upstream 66591 3279105 ~ 3288531 (+)
LOC118940058 NA coding upstream 96236 3229356 ~ 3258886 (+)
LOC118940196 LOC106591017 coding upstream 118743 3235237 ~ 3236379 (+)
LOC118940188 NA coding upstream 128658 3213831 ~ 3226464 (+)
LOC118940199 NA coding downstream 2630 3361665 ~ 3379448 (+)
LOC110506849 LOC106591221 coding downstream 113104 3472139 ~ 3482362 (+)
LOC110506848 LOC106594001 coding downstream 127815 3486850 ~ 3492236 (+)
LOC118940208 NA coding downstream 135989 3493931 ~ 3497000 (+)
LOC110506850 LOC106593733 coding downstream 160763 3519620 ~ 3526117 (+)
G1414310 NA non-coding upstream 46925 3306293 ~ 3308197 (+)
G1414196 NA non-coding upstream 111983 3237060 ~ 3243139 (+)
G1414262 NA non-coding upstream 148809 3135901 ~ 3206313 (+)
G1414210 NA non-coding upstream 166758 3182113 ~ 3188364 (+)
G1414360 NA non-coding downstream 58076 3417111 ~ 3425587 (+)
G1414394 LOC106608449 non-coding downstream 142463 3501498 ~ 3503035 (+)
G1414399 NA non-coding downstream 147963 3506998 ~ 3507304 (+)
G1414402 NA non-coding downstream 157496 3516531 ~ 3517055 (+)
LOC118940192 NA other upstream 363483 2988823 ~ 2992650 (+)
G1414065 NA other upstream 664981 2662170 ~ 2690141 (+)
LOC110514702 LOC106603759 other upstream 1134512 2204951 ~ 2277856 (+)
LOC110493359 LOC106564044 other upstream 1156463 2191004 ~ 2199748 (+)
G1414430 NA other downstream 228209 3587244 ~ 3592915 (+)
LOC118940205 LOC106585892 other downstream 311891 3670220 ~ 3678312 (+)
G1414190 NA other downstream 531728 3890763 ~ 3893220 (+)
LOC118940211 NA other downstream 756627 4115570 ~ 4119613 (+)
LOC118940198 LOC106593831 other upstream 1040 3355122 ~ 3359173 (+)

Expression


Co-expression Network