Fish Transcriptome and Expression Database

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model fish

XLOC_033138 (AL929512.1)

Basic Information

Item	Value
gene id	XLOC_033138
gene name	AL929512.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007117.7
NCBI id	CM002890.2
chromosome length	60270059
location	47602599 ~ 47602715 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064395
TTTTACATccacatcaccctgcagcccatgaccgattactcactgaagctaagcaaggctgagcctggtcagtacctggatgggagaccacatgggaaaactaggttgctgttgaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000113655

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00064395	True	117	rRNA	0.50	1	47602599	47602715

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_033136	im:7151449	coding	downstream	96248	47484084 ~ 47506351 (-)
XLOC_033134	grm4	coding	downstream	355651	46981486 ~ 47246948 (-)
XLOC_033135	CABZ01055240.1	coding	downstream	446183	47156302 ~ 47156416 (-)
XLOC_033133	igfn1.1	coding	downstream	661354	46878889 ~ 46941245 (-)
XLOC_033132	igfn1.3	coding	downstream	727289	46843592 ~ 46875310 (-)
XLOC_033139	lrig2	coding	upstream	207040	47809755 ~ 47840465 (-)
XLOC_033140	RAP1GAP	coding	upstream	266682	47869397 ~ 47953829 (-)
XLOC_033141	NA	coding	upstream	376590	47979305 ~ 48061659 (-)
XLOC_033142	slc2a1b	coding	upstream	465980	48068695 ~ 48094342 (-)
XLOC_033143	st7l	coding	upstream	687410	48290125 ~ 48317562 (-)
XLOC_033123	CU041346.1	non-coding	downstream	1292588	46294361 ~ 46310011 (-)
XLOC_033121	BX005101.1	non-coding	downstream	1350659	46168017 ~ 46251940 (-)
XLOC_033122	BX005101.2	non-coding	downstream	1374367	46228117 ~ 46228232 (-)
XLOC_033118	NA	non-coding	downstream	1673424	45923942 ~ 45929175 (-)
XLOC_033145	CU469362.1	non-coding	upstream	777530	48380245 ~ 48381223 (-)
XLOC_033148	CU137649.1	non-coding	upstream	1009319	48612034 ~ 48612150 (-)
XLOC_033149	NA	non-coding	upstream	1312153	48914868 ~ 48949515 (-)
XLOC_033152	NA	non-coding	upstream	1498164	49100879 ~ 49104192 (-)

Expression

Co-expression Network