XLOC_033139 (lrig2)


Basic Information

Item Value
gene id XLOC_033139
gene name lrig2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 47809755 ~ 47840465 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064396
CCTGTTCGTGTTCTGGTGGTCCGGGAGCAGCACAATTGCTGGATTGTAATAGGAAAAGACTGACTGCAGCAGCTCTGGAAGCTCCAGCCTGGGTCACCCACGCGTCTATAAATCAGAATGAACTTACAGCAGTGCCTTTTCTTGGAGACGCCTCATCCAACATCACTGTGCTGTCACTTGTTCATAACCGAATCTCTGAAGTGGTGGCGGAGCAGCTGTTGCCATATTCATCACTGGAAAGTCTAGACTTGAGCTCTAATTCTATATCAGAGCTTAAAGCTGGATCATTCCCTCCCATGCAGCTAAAATACctCAACCTGAGCAAGAACAAGATAAGTTCCCTGGAACCTGGCTGTTTCGGAAACATCAGCTCTCTTCTGGTGTTGAAGATAAACCAGAACAGACTCTCTCTGCTGCCCGATAAAGTCTTCACCCTCTCTCAGCTCCAAGTCTTGGAGTTAAGGCGCAACAGGATCCGTGTCGTGGAAAGTCTCATTTTCAAAGAGCTGAAGGCTCTTAAATCACTGAAAATGCAGCGCAACGGCATCACAAAGCTGATGGATGGAGCGCTCTTTGGTTTAGAAAACATGGAGGAGCTAGAATTGGAGTACAATAATCTGACGGAGCTGAATAAAGGCTGGCTGTACGGACTTCACATGCTCCGTATTTTACGTGTCAATCAAAACAACATCGGACTCATCCGAGCTGATGCCTGGGAGTTTTGCCATCGCTTGGAGGAACTAGACTTGTCCTTCAATCACTTGAGTCGTCTGGAGGATTGGGTGTTTGCAGGTCTCAGTCTCCTGCAGAGTCTCAATTTAGGGGACAATCAAATCTCACACCTGGGAGAAGGAGTGTTCAGCAGCCTGGCTAATGTCCGCACACTGGACATCCGCAATAATGAGATATCCCTTGCCATCGAGGACTTCATTGGCATGTTTGTGGGTCTGAAGAGGCTGAATTCACttgttttaCAGAATAATAAAATCAGGACCATCACTAAGAGAGCTTTCGAGGGTCTGATGGAGCTGGAGAATTTGGACCTGAGTAAGAATGGCATCATGTCTATTCACCCGGACGCTTTCACTCATTTAAAGCTTAAAACACTTGATCTGAACAGCAGCAGTCTCCTGTGTGACTGTCAGCTTCAGTGGTTGGGCCAGTGGTTGATTAACAGCCGCTTTCAGCAGTCCTGCACTGCTGTCTGTGCTCATCCCGCCTCCCTGGCCGGATCTAGTGTGCTTGCTGTTAAACCAGAGGAGTTTGTCTGCAGTGATTTTCCTAAACCCCAGATCACAGCTCACCCAAAGACTGCTGTTGCGTTACGTGGGACAAACGTCACTCTGAACTGCTCCGCCTTCAGCAGCAGTGACTCTCCCATGAGCACGGCCTGGCGCAAAGATGGAGAGGTGCTGTATGAAGCTCAGGTGCAGAACTACGCTCGCTACCAGGACCAGCGCCTCCTCTACACCACCATACTCCATCTGCTCAACGTCAATTTCACAGACGAGGGCCAGTACCAGTGTGTGCTCTCCAACCATTTCGGCTCAAACTACTCCACTCTGGCCAAGCTCACTGTTAATGAGCTCCCGACCTTCCTGAAGACGCCCATGGATCTGACCATCCGCACTGGGACTGTTGCGAGGTTAGAGTGTGCTGCAGAGGGACACCCGACACCCCAGATCGCTTGGCAAAAAGACGGTGGTATCAATTTCCCTGCTGCTCGTGAAAGAAGGATGCATGTCATGCCAGATGATGACACTTTCTTCATCGCTAACGTGAAGGCAGAAGATATGGGCGTCTACAGCTGTACAGCCAAAAACGAGGCAGGCAGCCTGTCAGCCAATGCCACCCTCACTGTGCTAGAAACTCCATCCTTCCAGCGTCCCCTAGAGGATCGTAATGTTGCCCGAGGAGAGACCGCTGTCCTCCAGTGTATAGCTCGTGGTAGCCCCGCCCCCCGCCTTAACTGGACCAAAGACGATGCTCCATTGGTTCTAACGGAGCGTCACTTCTTTGCTGCAGCCAATCAGCTCCTCATAATTGTTGATGCAGGACCTGCTGACGCAGGGAAATATACATGCATCATGTCTAACACACTTGGCACTGAACGTGGCCATATCTACCTCAGCGTCTCACCCTCAGCCAACTGTGACCCGGGGAGCAGCGTTTACGGGCATGACGGATGGACGACGGTTGGCATTGTGGTCATGGTGGTCGTTTGCTGTGTTGTCGGCACCTCACTTGTGTGGGTCATAGTCATTTACCATATGAGGAGGAAGAGTGAGGACTACAGCATTACAAACACAGATGAGATGAACCTACCAGCAGACATTCCCAGTTACCTGTCGTCTCAGGGAACACTGTCAGAGCCTCAGGAGGGCTACAGTAACTCAGAGAACGGAAGCCACCAGCAGCTCATGCCCTCTCATGCTAACGGTTACATCCATAAAGGCACCGATGGAGTATGTTATGGTGAAGTAAGCAGCGATGTTGATCCAGATGCCAATGGAATGCTGGGTAGTCGCGTAGGCTCTTTCTTTGCTGGACATAACAGCTTCCATCGGAGTGAACCAAGAGAAGGACAGTCAAATATCCCTAACGGAGGTGCGGGCGCTCTTGTGATCTGCTCTGACTGCTACGATAATGCTAATATCTACTCGCGCACACGTGAGTACTGCCCGTATGCCTACCTGACTGAGGATGACCCACTCGTGGCTCAGATTTCTCGGGACGGACCTCAAGAGCGGGATCAACACTCTGAGAATTCGGACGCGGTGTTGGAGAGCTTCATAAATCAGCAGAACGCATCAGTGTTCCTCAGCAACCATGAACCACGACTATCAGCGTCACAACACTACAGCACTGATATCCCAGGCAGGTCATTTTGGGATGCTGAGGATACCCACTCTTCCATCCTTGCCCAGGGCTCAGTGACTGTACACAACTCCCCGGTGTGCCCATCCACTGGGGATGACCGTGAGGAGAGGAGGGGGGCACTGGAGGAACCCTCATACAGGACTAACCCGCAGGAAAGCACCTCTGCACCCACATAAACCCAACCCATCCCATCCCTGTGCTCTCCAATCATCATCACCGCCCTGTCCTTCAGTGTCCCGCCAGTGCCCTCACTCCACTACCTCCTTCGAGAAGCCTCATTGTCTGCCAAATGAAACGCCTCTCTCTTCAATGTTTACACCTGTTAATCCTTCGTGTTTCTTTGGAGCTCATTGGGATATGtgtgtaaaaactcaaaacaggaGACGCATTTCCCGCTTTCACCATTCCTTCCTGGTGTGGTTTCGAGCCCTGAATGTAATGTTTTCCAAGAGCTCCACTATTCCTACCTTTATCCCATGACGTATGAATTATTCCGTGATTGGTTTGAACGTTGAGCCTCTTTGCATATGCCAAAAAAGCTTGACCCAGATGTCTTTTTTTCTCTGGATCTTTCTGAATGCTGTTGCTGGACATCGGACTGCCAAAATTGAGCAGCGACTGACTTCGGAGGGTCAATTACCCGTATTGCATTTCTCATTGCTGTTGGCAAGCGGTACTGACTGCTGACCGATAATGTGTTAACAGAGTTGACAGCTCTGTTGTTTCCACTTGTTATTGTACGCCAGAGTTACTGTTATTTGTCATTaataatgcattttgttttgctCTTCACAAAAACGCAAACATATTCCTCAGTTGCTCTCTGTTTTCGTGAGGCACTATAATCGAATTGAATATATTGCACCTTTGACAATCCGCCCAGGACAGCCTTACGAAAATTGTGATTTGCTCGCTcgcttttttatttttcctatCCTTTATTTGCATATTATGCTTTCGtctcgttttttttattttgtgatatctTTTTAAGGGTTAAGATTGTACTGTTCGGCACCCTAGTGGTGTAGAAATCACACACTTCACCTTTACAGTATGTCCGTGTgctgtttatatatgtattattacatATATGTTGAGTTAAAGTCTAATCCGTCCGGTACATGCTGTTATGTGAGTAGAGCTTCTGAAAAAATTGAATATTCTGTCTGTAATTACTCAACCTCCACTTGTTCCCAAacctatttaagttttttttgttctattaaacaaaaaaaaaagaagatagtttgaagaatgcttgaAACGGCCATTATTTTCATTGTACTTTTTTATTCTATGGATGTCAAAGTCTGCCAGTTTCtgacattctacaaaatatcttcttttgtattcaacagaataaagaaactctagGGATAGAAATGTATTAACTCCATTTTCAAGGTTAAAAACAATTGACAATTAAGCATAGGCCGACTTAATTAGTTTTAATGTTTTCTCAGTGGATGGACAGCTGGATTTTAGTCCTCTTGCGTGTAAACATGGTCTTAAGAGAGGTGAGCTGTGTCCAAAAGCTACAAACTTCTTTCTTCCCACTCATTTAGCACACACCTTTTAAGGAAAGCCATTTCACGCTGACTTTCACAGCACTGTAAAATAACCTCTAATGATCTCGAACTAATTTAAATGAGCCTCAGAGATAAGCAAGGGAATATTTAATCACCGCAATTATAATTTCTCTGAATTTAGAGGAAAGAAGGACTACGATTGGATTTACTGCTTTTTAGACACTCAGTTAGAATAAATTTATTCTTCCAATTATATTTGTTCTGTAAGCCCAATGGCATGCGTGTGATTGGTggatattttattaacaaattaacaaaagtaTCCTGAGGAAAGATTGACACTTGccttaaaggaacacttttttttttttaaatagatgttattggtctaatccgattcattgatctatgctaagctaagctaaacgtgTTTCTTCCAGATCCAGAGATCAGCCAAGCTCTaggagagttgtaaaatgagcccgtttccaaaaaaagtggagtgtttcttttaACACAATTTTCTCTTCGGGCACAGCTACtgcctttattattttttttgtagtccatTTCATTAATTTGAAATTGTATAGTCTGAAATTGCGTGTCAGGTGAAATATTACAAGCTTTTGAACGTTGAATTCAAAAGCCAAGTCAGGTTTACCAGTGTTCAACAAAATTTTACCAACACAATAATTTTTCCAAAACGAAGAGTAGTTGGAGATTTCATTCAAGTGTGAAGTTTTGCCAATGATTTTAACACGATCGCCTCTTTAGAGAAAACCTACTCTCAGGTTCTTGACCATTTGGATTGACTGCTTGATGACCCAAACTGTTTATGGATTAaaatctttgattaacttttgccttaaaggaacactcttcAACCCTTTTCTTTTGCTAATAGTTtcatctgattcaatgatctttgctaagctaagctaaaagtgtcccTTCTAGACCCAGAggttggctgaatggattaaaaaaatgataaacttCGAGATTTCTTCACTTGGAGAGTTGTAGAATGAGCCGATCTCCAAAAAAGGTAGTgtttctaaatacatttttacctccagaaaaaaaattctctttTCGGACAAAGCTGCAACCTTGCTTAATAAAGTCCATATCATGAACTGAAAATCTCATGTCAGGTGAAATATTTCGTTTCAGCTTTTGAACATTGAATACAAGTCTAGTCAAGTTTTCCAATGCGCAGCAAAATTTACagacaaaataatttttgttgtttatttcatTCGAGTGTGAAGTTTCACCAATGATTTTGTTAACACGATCGTCCCTTTAGAGAAAATCCACTCTCATGTTCTTGACCATCTGGACTGACTGCTTGATGACCCAAACCATGTTTATGGATTCCAATCTTTGATTGACATTTGCCTTAAATGAACACTCCACCTTTTTCGGataaagatgctaatggtctaatctgactcAATGATCTATTCTAAGCTACGCTAATAGTGTCCCTGCCAGACCCAAAGGTTGGCTGAATAAATTCAAAAATGGTAGAACTCAATGGTTTAACTCTTGGAGAGTTGTTGAACGAGCCTATTTCCAAACAAAAAGTAGGATTTCTTAACATTTTTtacctcaagaaaaaaaaaactctttctcTTTTTGGATACAGCTACAACCTTGCTTATGAAGTCCATATCATGAACTGAAAATGTATAGTCTCAAATTTAATGTCAGGGGAAATATTTCCCTTCAGAAGCTTTTGAACACTGAATATAAGTCTAGTCAAGTTTTCCAGTAAAGTGAGTTATTATTTTAACATGATCACCCCTTTAGTAAAAACTACTCTCACATTCTTGCCCATCTCGATTGACTCCTTAATGACCCGAACTCTAAATTTAGAAACTTCCATAACTTTGCTCACTCACATttgcactttttattttcttGAACCTACAAAAAAGCTGGATCTTTCTCTGCAGCAGATATCTGTGGTCACTATCTTCCTTGCTGTCTTTTAATGGAAATGATTCATTTCAGACGCTCTCCAACTGTGATAACGACCTCTTGATTTGCATATTCATTTGTTGCATTTTGCACAATCTCTTGCCTTGCTGTTAGCTATACAATTACTCTAATCAAGAGACCTTGATGCCAGATGATGCGGCTGACTCCTCGCTGCGTCAATTTCCCTTGTTGAAAGGAaaggagtgtgtatgtgtgtcatcAGCGGCTTCATTTAAAACATCCACATTTTTTTGAATTGCTGTTAGTGTTTGCTTGGCCTCTCTTGGTACAGCTTGTGGGAGGCGAACACAAAGCAACATCATTTAAAAGTGATGCAAGTGAATAGCAGATTTATTTTACTCTGAATTACGTAGGACTCTGTTGGGatctttttatttagttgtgtGCGAATTTAAACCAAAGAAGAAAAACGTTCCTGCCTTCTGCCAACCAAAGCTTAGCTTCAGTGCTTTGACAATATTTAAATGCTGcttttataaatattgttttgtgtatttttttttgtatgctgTACCTGTACATTCTGTAAAGCATGTATAAAGAACATTGTTTCAGAAAGTTCTGACATTTAGCtgacatttaaacattaaaatgaattcagATGCA
>TCONS_00064397
ATATTGTTATGGGACGTCTGTAACCATCTGTTGTTTATTTTCAGTGTTCATAACCGAATCTCTGAAGTGGTGGCGGAGCAGCTGTTGCCATATTCATCACTGGAAAGTCTAGACTTGAGCTCTAATTCTATATCAGAGCTTAAAGCTGGATCATTCCCTCCCATGCAGCTAAAATACctCAACCTGAGCAAGAACAAGATAAGTTCCCTGGAACCTGGCTGTTTCGGAAACATCAGCTCTCTTCTGGTGTTGAAGATAAACCAGAACAGACTCTCTCTGCTGCCCGATAAAGTCTTCACCCTCTCTCAGCTCCAAGTCTTGGAGTTAAGGCGCAACAGGATCCGTGTCGTGGAAAGTCTCATTTTCAAAGAGCTGAAGGCTCTTAAATCACTGAAAATGCAGCGCAACGGCATCACAAAGCTGATGGATGGAGCGCTCTTTGGTTTAGAAAACATGGAGGAGCTAGAATTGGAGTACAATAATCTGACGGAGCTGAATAAAGGCTGGCTGTACGGACTTCACATGCTCCGTATTTTACGTGTCAATCAAAACAACATCGGACTCATCCGAGCTGATGCCTGGGAGTTTTGCCATCGCTTGGAGGAACTAGACTTGTCCTTCAATCACTTGAGTCGTCTGGAGGATTGGGTGTTTGCAGGTCTCAGTCTCCTGCAGAGTCTCAATTTAGGGGACAATCAAATCTCACACCTGGGAGAAGGAGTGTTCAGCAGCCTGGCTAATGTCCGCACACTGGACATCCGCAATAATGAGATATCCCTTGCCATCGAGGACTTCATTGGCATGTTTGTGGGTCTGAAGAGGCTGAATTCACtgtacgattttttttttcccccctgtTGGTGGATattagcgttttttattttacttgacctgagcatttgtgtgtgtttttcagtgttttaCAGAATAATAAAATCAGGACCATCACTAAGAGAGGACCTGAGTAAGAATGGCATCATGTCTATTCACCCGGACGCTTTCACTCATTTAAAGCTTAAAACACTTGATCTGAACAGCAGCAGTCTCCTGTGTGACTGTCAGCTTCAGTGGTTGGGCCAGTGGTTGATTAACAGCCGCTTTCAGCAGTCCTGCACTGCTGTCTGTGCTCATCCCGCCTCCCTGGCCGGATCTAGTGTGCTTGCTGTTAAACCAGAGGAGTTTGTCTGCAGTGATTTTCCTAAACCCCAGATCACAGCTCACCCAAAGACTGCTGTTGCGTTACGTGGGACAAACGTCACTCTGAACTGCTCCGCCTTCAGCAGCAGTGACTCTCCCATGAGCACGGCCTGGCGCAAAGATGGAGAGGTGCTGTATGAAGCTCAGGTGCAGAACTACGCTCGCTACCAGGACCAGCGCCTCCTCTACACCACCATACTCCATCTGCTCAACGTCAATTTCACAGACGAGGGCCAGTACCAGTGTGTGCTCTCCAACCATTTCGGCTCAAACTACTCCACTCTGGCCAAGCTCACTGTTAATGAGCTCCCGACCTTCCTGAAGACGCCCATGGATCTGACCATCCGCACTGGGACTGTTGCGAGGTTAGAGTGTGCTGCAGAGGGACACCCGACACCCCAGATCGCTTGGCAAAAAGACGGTGGTATCAATTTCCCTGCTGCTCGTGAAAGAAGGATGCATGTCATGCCAGATGATGACACTTTCTTCATCGCTAACGTGAAGGCAGAAGATATGGGCGTCTACAGCTGTACAGCCAAAAACGAGGCAGGCAGCCTGTCAGCCAATGCCACCCTCACTGTGCTAGAAACTCCATCCTTCCAGCGTCCCCTAGAGGATCGTAATGTTGCCCGAGGAGAGACCGCTGTCCTCCAGTGTATAGCTCGTGGTAGCCCCGCCCCCCGCCTTAACTGGACCAAAGACGATGCTCCATTGGTTCTAACGGAGCGTCACTTCTTTGCTGCAGCCAATCAGCTCCTCATAATTGTTGATGCAGGACCTGCTGACGCAGGGAAATATACATGCATCATGTCTAACACACTTGGCACTGAACGTGGCCATATCTACCTCAGCGTCTCACCCTCAGCCAACTGTGACCCGGGGAGCAGCGTTTACGGGCATGACGGATGGACGACGGTTGGCATTGTGGTCATGGTGGTCGTTTGCTGTGTTGTCGGCACCTCACTTGTGTGGGTCATAGTCATTTACCATATGAGGAGGAAGAGTGAGGACTACAGCATTACAAACACAGATGAGATGAACCTACCAGCAGACATTCCCAGTTACCTGTCGTCTCAGGGAACACTGTCAGAGCCTCAGGAGGGCTACAGTAACTCAGAGAACGGAAGCCACCAGCAGCTCATGCCCTCTCATGCTAACGGTTACATCCATAAAGGCACCGATGGAGGTGCGGGCGCTCTTGTGATCTGCTCTGACTGCTACGATAATGCTAATATCTACTCGCGCACACGTGAGTACTGCCCGTATGCCTACCTGACTGAGGATGACCCACTCGTGGCTCAGATTTCTCGGGACGGACCTCAAGAGCGGGATCAACACTCTGAGAATTCGGACGCGGTGTTGGAGAGCTTCATAAATCAGCAGAACGCATCAGTGTTCCTCAGCAACCATGAACCACGACTATCAGCctctagtgtcTACCAGCATAAATACAGTTTGAAACGCATCTACTGCTTGTATCCATTTTCCCAATCTCTGTTATATTTTATCAGATATCCCAGGCAGGTCATTTTGGGATGCTGA
>TCONS_00064398
TAGACTTGAGCTCTAATTCTATATCAGAGCTTAAAGCTGGATCATTCCCTCCCATGCAGCTAAAATACctCAACCTGAGCAAGAACAAGATAAGTTCCCTGGAACCTGGCTGTTTCGGAAACATCAGCTCTCTTCTGGTGTTGAAGATAAACCAGAACAGACTCTCTCTGCTGCCCGATAAAGTCTTCACCCTCTCTCAGCTCCAAGTCTTGTGCGTATTTCAAGGCTAATGAATAGGATGTTATTGCAGCGCTCAATTAGATTGTATCTGACAGAATTACTGCTTGCTAAATGCTACTGATATTATCAAGAGAGGAGTTC

Function

symbol description
lrig2 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in urofacial syndrome. Orthologous to human LRIG2 (leucine rich repeats and immunoglobulin like domains 2).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04360 Axon guidance

ZFIN:

id description
ZDB-GENE-041111-75 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in urofacial syndrome. Orthologous to human LRIG2 (leucine rich repeats and immunoglobulin like domains 2).

Ensembl:

ensembl_id ENSDARG00000078561

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064396 False 7031 mRNA 0.43 18 47809755 47840465
TCONS_00064397 False 2739 mRNA 0.50 14 47813887 47838481
TCONS_00064398 True 321 lncRNA 0.42 2 47835353 47838372

Neighbor

gene id symbol gene type direction distance location
XLOC_033137 magi3b coding downstream 12766 47529881 ~ 47796989 (-)
XLOC_033138 AL929512.1 coding downstream 207040 47602599 ~ 47602715 (-)
XLOC_033136 im:7151449 coding downstream 303404 47484084 ~ 47506351 (-)
XLOC_033134 grm4 coding downstream 562807 46981486 ~ 47246948 (-)
XLOC_033135 CABZ01055240.1 coding downstream 653339 47156302 ~ 47156416 (-)
XLOC_033140 RAP1GAP coding upstream 28932 47869397 ~ 47953829 (-)
XLOC_033141 NA coding upstream 138840 47979305 ~ 48061659 (-)
XLOC_033142 slc2a1b coding upstream 228230 48068695 ~ 48094342 (-)
XLOC_033143 st7l coding upstream 449660 48290125 ~ 48317562 (-)
XLOC_033144 capza1a coding upstream 481785 48322250 ~ 48347724 (-)
XLOC_033123 CU041346.1 non-coding downstream 1499744 46294361 ~ 46310011 (-)
XLOC_033121 BX005101.1 non-coding downstream 1557815 46168017 ~ 46251940 (-)
XLOC_033122 BX005101.2 non-coding downstream 1581523 46228117 ~ 46228232 (-)
XLOC_033145 CU469362.1 non-coding upstream 539780 48380245 ~ 48381223 (-)
XLOC_033148 CU137649.1 non-coding upstream 771569 48612034 ~ 48612150 (-)
XLOC_033149 NA non-coding upstream 1074403 48914868 ~ 48949515 (-)
XLOC_033152 NA non-coding upstream 1260414 49100879 ~ 49104192 (-)

Expression


Co-expression Network