LOC110506850 (LOC106593733)


Basic Information

Item Value
gene id LOC110506850
gene name LOC106593733
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 3519620 ~ 3526117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948283.1
atgactgTCACGTcgaaaaaggaggaggaagaagagaaggaaactggatatctgggcccggATGGTTCAAATGATGAACTTAGCCGTAAGATGGTTTTGAGAAACCGTTCCTCGATTTacactagagagagacgtgacgatcgtggatcctctggggagcctcaacaacatcatgaagctgaagaggcagaggagagttTTTCCGCATCAGAACATCTCAATAAACAGAAGCGGAAACGCACAGGGAAGAAACCTCaccgctgctctgactgtgggaagagattcacatCTTCAGCAGACCTCAAAAGACATCAGAGAATccatacaggagagaaaccttatagctgtgatcaatgtgggaagagatttactGATCTAAGCAGCCTGAAAAGACACCAAAGAATTCAcacgggagagaaaccttatagatgcactgactgtgggaagagttttaatgTTCCAAGCAGCCTGAAAACACACCAAAGAATTCAcacgggagagaaaccttatagctgcactgactgtgggaagagttttaatgTTCCAAGCAGCCTGAAAACACACCAAAGAATTCAcacgggagagaaaccttatagctgtgatcaatgtgggaagagttttgtttcaTCTAGCCAACTGACTGTACACCAGAGaccacacacaggagagaaatgttatagctgtgatcaatgtgggaagagttttgtttcaTCTAGCAAGCTGACTGCacaccagaaaacacacacaggagagaaatcgtatagctgtgatcaatgtgggaagagatactCTGGTAAAAGATCTCTGATtagacatcagaaaatacatgaagGAGTTGTTCCATGATATCAATAAAATGTCATAATGTAGAACCCTAAA
>TU1616611
cgtcaaagaggaggaggaagaggaggctgttacaatacaaaaacaagtagagggtgaggctgttacagtgaaagaagaagagaaagacgtttcagtgaaagacgaggaagacgcgttcagagtgaaagaggaggaggatgttactgtaaaagaagaggaggaagagaaagaggaggagatgactgTCACGTcgaaaaaggaggaggaagaagagaaggaaactggatatctgggcccggATGGTTCAAATGATGAACTTAGCCGTAAGATGGTTTTGAGAAACCGTTCCTCGATTTacactagagagagacgtgacgatcgtggatcctctggggagcctcaacaacatcatgaagctgaagaggcagaggagagttTTTCCGCATCAGAACATCTCAATAAACAGAAGCGGAAACGCACAGGGAAGAAACCTCaccgctgctctgactgtgggaagagattcacatCTTCAGCAGACCTCAAAAGACATCAGAGAATccatacaggagagaaaccttatagctgtgatcaatgtgggaagagatttactGATCTAAGCAGCCTGAAAAGACACCAAAGAATTCAcacgggagagaaaccttatagatgcactgactgtgggaagagttttaatgTTCCAAGCAGCCTGAAAACACACCAAAGAATTCAcacgggagagaaaccttatagctgcactgactgtgggaagagttttaatgTTCCAAGCAGCCTGAAAACACACCAAAGAATTCAcacgggagagaaaccttatagctgtgatcaatgtgggaagagttttgtttcaTCTAGCCAACTGACTGTACACCAGAGaccacacacaggagagaaatgttatagctgtgatcaatgtgggaagagttttgtttcaTCTAGCAAGCTGACTGCacaccagaaaacacacacag

Function

NR:

description
zinc finger protein 271-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948283.1 False 879 mRNA 0.43 2 3519798 3526117
TU1616611 True 926 TUCP 0.45 2 3519620 3525986

Neighbor

gene id symbol gene type direction distance location
LOC118940208 NA coding upstream 23556 3493931 ~ 3497000 (+)
LOC110506848 LOC106594001 coding upstream 27562 3486850 ~ 3492236 (+)
LOC110506849 LOC106591221 coding upstream 37436 3472139 ~ 3482362 (+)
LOC118940199 NA coding upstream 140350 3361665 ~ 3379448 (+)
LOC118940198 LOC106593831 coding upstream 160763 3355122 ~ 3359173 (+)
LOC110506159 LOC106595729 coding downstream 4357 3530474 ~ 3536846 (+)
LOC110506843 LOC106595654 coding downstream 25787 3551904 ~ 3557325 (+)
LOC118940207 LOC106595687 coding downstream 37277 3563394 ~ 3569356 (+)
LOC110487186 LOC106595670 coding downstream 47435 3573552 ~ 3582713 (+)
LOC118940061 NA coding downstream 81968 3608085 ~ 3609985 (+)
G1414402 NA non-coding upstream 2743 3516531 ~ 3517055 (+)
G1414399 NA non-coding upstream 12494 3506998 ~ 3507304 (+)
G1414394 LOC106608449 non-coding upstream 16763 3501498 ~ 3503035 (+)
G1414360 NA non-coding upstream 94211 3417111 ~ 3425587 (+)
G1414425 NA non-coding downstream 45915 3572032 ~ 3572570 (+)
G1414431 NA non-coding downstream 61311 3587428 ~ 3602917 (+)
G1414434 NA non-coding downstream 64276 3590393 ~ 3600933 (+)
G1414440 NA non-coding downstream 79003 3605120 ~ 3606830 (+)
LOC110513329 LOC106595349 other upstream 231840 3279105 ~ 3288531 (+)
LOC118940192 NA other upstream 528159 2988823 ~ 2992650 (+)
G1414065 NA other upstream 829657 2662170 ~ 2690141 (+)
LOC110514702 LOC106603759 other upstream 1299188 2204951 ~ 2277856 (+)
G1414430 NA other downstream 61127 3587244 ~ 3592915 (+)
LOC118940205 LOC106585892 other downstream 144809 3670220 ~ 3678312 (+)
G1414190 NA other downstream 364646 3890763 ~ 3893220 (+)
LOC118940211 NA other downstream 589545 4115570 ~ 4119613 (+)
LOC118940222 NA other downstream 960509 4486626 ~ 4489118 (+)

Expression


Co-expression Network