LOC118940205 (LOC106585892)


Basic Information

Item Value
gene id LOC118940205
gene name LOC106585892
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 3670220 ~ 3678312 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948638.1
CATATGCCACTGGGTGAGAGAAGTTTTCATTGTATTTGGGCAGCATTATATGAAGTGTTATGTGTTGTTCGTGATGAGCCTTGGTCAATTTAGCTTGgagtatggcaccctattctatcTGTCACCTAATCCTGCCTAATAGGCAGGCCAATCCTGGAGGAAAGTATTGGCTGTAAGAAGTAAGAACATAACATCTGGTTATTTTTAAATGACTTCTCATGACATTGCTTGCCAGACAACATTGTAATTCATATTTTTCCAAtttgcgttacccactccagtcagcagatggcgatatgAATTTTTCAGGTGATGCTTTCTAGTGGACGGGCGGGAGGATTCTTCAACAGCGACAAAAGGTTCCTGATTTACCCACGCGGTGCTTTGCTAGCAAACCTAAAAATTGAAGCTCTTTAGACCAATCTTGTGTAAATTACTCTTAGTGTTTTGAACATAATTACCTATCTACTGGTTCATTTAAACGTAATTTGCTTGTTAAATTAGCAAATGTGTTACATTGATACTGCACTCGGCTAATCTCCCGGAGCATAAACTCACTAATCTCGACGGAGAAAGAAACTGGTGAAAGGAGGCAAAGAAGCTTGAAGAATGAATAAGGAGGCTATCACATTGAAACAAGAGgatgatattacagtgaaagaggaaTATGGGAACGAGGTTGTCAAAGTGGAAAAAGAGGTAGAAGCTTTCAGAATCAAAACGGAGGAAGAAACGTTTGGAGTAAAAGAGGCGAGTGTCTCAATAAAAGAGGAGAGTGTCTCAATAAAAGAGGAAGACGCTTTGGGAGTGAAAAACGAGACTGAAGATCCGATTaccaccagcgagagacatgactatcgtggatcctccggggagcctcaacaacctcatgaagctgaagaggcagagaagagtctctccagatcagaacaccagatggacaacgctagcccttcctccctcctggaGTCCCAGTGTCGTGCCTCTCCCGggatgaagaggttgtctgtgctgctggtggactgcaggacaagaacggggctgagtggaactgtgagaggaggagaagagaagaaaggatcagatttgactcatcaaaAAATTGAGAGTGACACAGAAGGAATGGATGAGGACTCTGTGAGTGATCTGAGTTTTGATTCCAGCGAGGATGACATGTTTTTGGAAGGAGAAGATCCAGTTTTCGATCAtgacactgaccccgactgggagcccccagtgccaacttGTCCATCcccctctgaagctggttcatcctcTGGCTCCACACCTTCCGGGCCGTCTAGAGGACCGacaaagaagaggaagaggggaagtgtGCCACCCGCTAACAGAGGGAAAGAAAGGCGTTGGCACACCGTCCTAGAAGACGATGTGGAGCCACCCCAACCAACTTTTAGGCCGAAAAGGAAGCCAGGACCTCAGCTAAACATGACTGCTACGTACAGCCCCCTTCAGCTTTTTCAGCTGTTCTTCACCCAATCCGTTGTAGAGTCGCTCGTGTCTAACACGAATAAGTATGGGAAGATGAAGCAAGCAAGCGAAAAGGTAGCATGGAAGCCCATATCCACGTCAGAGTTTTTCTGCTACCTTTCACTGGTCATCTACATGGGGCTGGTGAGGCTGGAAAGCCTGAGGGACTACTGGAAAACGTCATCTGTCTACCAACTGCCTTTCCCCTCGACAGTTATGTCCTGCAAAAGGTTTCTGGATCTCTCCCAGGCGCTTCACATCAGTGACCCAAAGGTTGATGAAGAGAACGAGAAGAAGAGGGGCACAGCGAGGTTCGATACGCTGTGCAAAATCAAACCTCTCTACCACAGCATTGTCGAGGCCTGCAAGACGTACTTTCAGCCAGCCCAGAACGTGTCAAtcgatgagaggatggtagcctcaaaggACAGAATTGGCCTCCAACAATACATGATAAACAAACCAACCAAGTGTGGTCTCAAACTGTTTGTGTTGGCTGACTCTGCGTGTGCCTACACGTGCAATTTCTTGGTCTATGAGGGGAAGAAGAGTTTTGCTACCGGTAAGGAACTCAGCTATGCCTCTGTAATGGtgttattggattttcaactgctcgggaagggctacaaactgtttgtggattacttctacacaagccctaccctgtttGCAGAGCTTAGGAAGCGGGGAGtgtgggcttgtggcaccattcgtACCTCCAAGGTGGGCTTCCCGAAGACGAAGGTGAACGACATGCCTAAGTGGGCTGAGCGGGGGACCATGAGATGGATCCGTGAAGATGGCCTGCTGTTTGTAAAGTGGATGGATGCCAAAGAGGTGGTGATGTGCTCCACaatccacaagtccttcagtgAGGATTATGTTGTCAGGCGTGTGAAGGACGCTACAGGGGCATGGACCaccaaaaatgtccccattccaacTGCGGTAAAGGACTTCAACAAGAGCATGGAAGGTGTGTACCTATCAGATGTGCTGACGGGCTATTACAATGTTCTCCATAAGAcaatgaaatggtacaagacctTCTTCTATCATTTCATCGACATCGCCGTGGTGAATGCATTCATCCTACACAAGGAAATGGCGACGAGCTGTGGAAAGCCCTTCCTCTCACAGAAAGCCTTCCGAGAGCAGCTCATCAAGGAGCTGGCTGGCCACAGCACCACTGCACCAAGTCCTGTCCCTTCTGCTCGAGAGCAGCTCATCAAGGAGCTGGCTGGCCACAGCACCACTGCACCAAGTCCTGTCCCTTCTGCTCGAGAGCAGCTcatcaaggagcttgctggcCGCAGCACCACTGCACCAAGCCCTGTCCCTTCTGCTCGAGAGCAGCTcatcaaggagcttgctggcCACAGCACCACTGCACCAAGCCCTGTCCCTTCTGCTCGAGAGCAGCTcatcaaggagcttgctggcCGCAGCACCACTGCACCAAGCCCTGTCCCTTCTGCTCGAGAGCAGCTcatcaaggagcttgctggcCGCAGCACCACTGCACCAAGCCCTGTCCCTTCTGCTCGAGAGCAGCTcatcaaggagcttgctggcCACAGCACCACTGCACCAAGCCCTGTCCCTTCTGTCCCTCCTGCCAcaagtgttcatctgcccaaatatatttgtgcaggcatggatgtgcctaagGGCCAAAGGGGCTCAGCATGGAGGCGTTGCTGTGTTGTCTGCAagatgaagtcccccatcacatGCCCCACATGCtcagtgaccctctgctttacatcgGAGAGAGACTGCTACGGCATCTGGCATCAGCAGCAGAATATTGTgtagagctttggcaaagtgggtggggttttatccttcctgtttggcccagtctcatcggatggggcaacagtgtctcctgacccctcctgtctcagcctccagtatttatgctgcagtagtttgtgtcggggggctagggtcagtttgttatatctggagtacttctcctgtcctattcggtgtcctgtgtgaatttaagtgtgctctctccaattctctcgttctctctctcggaggacctgagccctaggaccaggcGTCAGGCCTACCTGGcgtgatgactccttgttgtccccagtccacccggccgtgctgctgctccagtttcaactgttctgcctgcggctatggaaccctaaactgttcatttttactcttgaggtgtGTAGAAAAAAGCCAAAAGAGATCAGACCCCTCCCCCAGTAGCCGGTCCAGATCCAGAGCCACATCCATGGGCTCTAAGACCAACTATTGACTGGGGAATGCGGGAAGAAACTGCCACAAACAGCAAgtgaccagcagagggagccaaa
>XM_036948639.1
CATATGCCACTGGGTGAGAGAAGTTTTCATTGTATTTGGGCAGCATTATATGAAGTGTTATGTGTTGTTCGTGATGAGCCTTGGTCAATTTAGCTTGgagtatggcaccctattctatcTGTCACCTAATCCTGCCTAATAGGCAGGCCAATCCTGGAGGAAAGTATTGGCTGTAAGAAGTAAGAACATAACATCTGGTTATTTTTAAATGACTTCTCATGACATTGCTTGCCAGACAACATTGTAATTCATATTTTTCCAAtttgcgttacccactccagtcagcagatggcgatatgAATTTTTCAGGTGATGCTTTCTAGTGGACGGGCGGGAGGATTCTTCAACAGCGACAAAAGGTTCCTGATTTACCCACGCGGTGCTTTGCTAGCAAACCTAAAAATTGAAGCTCTTTAGACCAATCTTGTGTAAATTACTCTTAGTGTTTTGAACATAATTACCTATCTACTGGTTCATTTAAACGTAATTTGCTTGTTAAATTAGCAAATGTGTTACATTGATACTGCACTCGGCTAATCTCCCGGAGCATAAACTCACTAATCTCGACGGAGAAAGAAACTGGTGAAAGGAGGCAAAGAAGCTTGAAGAATGAATAAGGAGGCTATCACATTGAAACAAGAGgatgatattacagtgaaagaggaaTATGGGAACGAGGTTGTCAAAGTGGAAAAAGAGGTAGAAGCTTTCAGAATCAAAACGGAGGAAGAAACGTTTGGAGTAAAAGAGGCGAGTGTCTCAATAAAAGAGGAGAGTGTCTCAATAAAAGAGGAAGACGCTTTGGGAGTGAAAAACGAGACTGAAGATCCGATTaccaccagcgagagacatgactatcgtggatcctccggggagcctcaacaacctcatgaagctgaagaggcagagaagagtctctccagatcagaacaccagatggacaacgctagcccttcctccctcctggaGTCCCAGTGTCGTGCCTCTCCCGggatgaagaggttgtctgtgctgctggtggactgcaggacaagaacggggctgagtggaactgtgagaggaggagaagagaagaaaggatcagatttgactcatcaaaAAATTGAGAGTGACACAGAAGGAATGGATGAGGACTCTGTGAGTGATCTGAGTTTTGATTCCAGCGAGGATGACATGTTTTTGGAAGGAGAAGATCCAGTTTTCGATCAtgacactgaccccgactgggagcccccagtgccaacttGTCCATCcccctctgaagctggttcatcctcTGGCTCCACACCTTCCGGGCCGTCTAGAGGACCGacaaagaagaggaagaggggaagtgtGCCACCCGCTAACAGAGGGAAAGAAAGGCGTTGGCACACCGTCCTAGAAGACGATGTGGAGCCACCCCAACCAACTTTTAGGCCGAAAAGGAAGCCAGGACCTCAGCTAAACATGACTGCTACGTACAGCCCCCTTCAGCTTTTTCAGCTGTTCTTCACCCAATCCGTTGTAGAGTCGCTCGTGTCTAACACGAATAAGTATGGGAAGATGAAGCAAGCAAGCGAAAAGGTAGCATGGAAGCCCATATCCACGTCAGAGTTTTTCTGCTACCTTTCACTGGTCATCTACATGGGGCTGGTGAGGCTGGAAAGCCTGAGGGACTACTGGAAAACGTCATCTGTCTACCAACTGCCTTTCCCCTCGACAGTTATGTCCTGCAAAAGGTTTCTGGATCTCTCCCAGGCGCTTCACATCAGTGACCCAAAGGTTGATGAAGAGAACGAGAAGAAGAGGGGCACAGCGAGGTTCGATACGCTGTGCAAAATCAAACCTCTCTACCACAGCATTGTCGAGGCCTGCAAGACGTACTTTCAGCCAGCCCAGAACGTGTCAAtcgatgagaggatggtagcctcaaaggACAGAATTGGCCTCCAACAATACATGATAAACAAACCAACCAAGTGTGGTCTCAAACTGTTTGTGTTGGCTGACTCTGCGTGTGCCTACACGTGCAATTTCTTGGTCTATGAGGGGAAGAAGAGTTTTGCTACCGGTAAGGAACTCAGCTATGCCTCTGTAATGGtgttattggattttcaactgctcgggaagggctacaaactgtttgtggattacttctacacaagccctaccctgtttGCAGAGCTTAGGAAGCGGGGAGtgtgggcttgtggcaccattcgtACCTCCAAGGTGGGCTTCCCGAAGACGAAGGTGAACGACATGCCTAAGTGGGCTGAGCGGGGGACCATGAGATGGATCCGTGAAGATGGCCTGCTGTTTGTAAAGTGGATGGATGCCAAAGAGGTGGTGATGTGCTCCACaatccacaagtccttcagtgAGGATTATGTTGTCAGGCGTGTGAAGGACGCTACAGGGGCATGGACCaccaaaaatgtccccattccaacTGCGGTAAAGGACTTCAACAAGAGCATGGAAGGTGTGTACCTATCAGATGTGCTGACGGGCTATTACAATGTTCTCCATAAGAcaatgaaatggtacaagacctTCTTCTATCATTTCATCGACATCGCCGTGGTGAATGCATTCATCCTACACAAGGAAATGGCGACGAGCTGTGGAAAGCCCTTCCTCTCACAGAAAGCCTTCCGAGAGCAGCTCATCAAGGAGCTGGCTGGCCACAGCACCACTGCACCAAGTCCTGTCCCTTCTGCTCGAGAGCAGCTcatcaaggagcttgctggcCGCAGCACCACTGCACCAAGCCCTGTCCCTTCTGCTCGAGAGCAGCTcatcaaggagcttgctggcCACAGCACCACTGCACCAAGCCCTGTCCCTTCTGCTCGAGAGCAGCTcatcaaggagcttgctggcCGCAGCACCACTGCACCAAGCCCTGTCCCTTCTGCTCGAGAGCAGCTcatcaaggagcttgctggcCGCAGCACCACTGCACCAAGCCCTGTCCCTTCTGCTCGAGAGCAGCTcatcaaggagcttgctggcCACAGCACCACTGCACCAAGCCCTGTCCCTTCTGTCCCTCCTGCCAcaagtgttcatctgcccaaatatatttgtgcaggcatggatgtgcctaagGGCCAAAGGGGCTCAGCATGGAGGCGTTGCTGTGTTGTCTGCAagatgaagtcccccatcacatGCCCCACATGCtcagtgaccctctgctttacatcgGAGAGAGACTGCTACGGCATCTGGCATCAGCAGCAGAATATTGTgtagagctttggcaaagtgggtggggttttatccttcctgtttggcccagtctcatcggatggggcaacagtgtctcctgacccctcctgtctcagcctccagtatttatgctgcagtagtttgtgtcggggggctagggtcagtttgttatatctggagtacttctcctgtcctattcggtgtcctgtgtgaatttaagtgtgctctctccaattctctcgttctctctctcggaggacctgagccctaggaccaggcGTCAGGCCTACCTGGcgtgatgactccttgttgtccccagtccacccggccgtgctgctgctccagtttcaactgttctgcctgcggctatggaaccctaaactgttcatttttactcttgaggtgtGTAGAAAAAAGCCAAAAGAGATCAGACCCCTCCCCCAGTAGCCGGTCCAGATCCAGAGCCACATCCATGGGCTCTAAGACCAACTATTGACTGGGGAATGCGGGAAGAAACTGCCACAAACAGCAAgtgaccagcagagggagccaaa
>TU1616975
CTTTCAGAATCAAAACGGAGGAAGAAACGTTTGGAGTAAAAGAGGCGAGTGTCTCAATAAAAGAGGAGAGTGTCTCAATAAAAGAGGAAGACGCTTTGGGAGTGAAAAACGAGACTGAAGATCCGATTaccaccagcgagagacatgactatcgtggatcctccggggagcctcaacaacctcatgaagctgaagaggcagagaagagtctctccagatcagaacaccagatggacaacgctagcccttcctccctcctggaGTCCCAGTGTCGTGCCTCTCCCGggatgaagaggttgtctgtgctgctggtggactgcaggacaagaacggggctgagtggaactgtgagaggaggagaagagaagaaaggatcagatttgactcatcaaaAAATTGAGAGTGACACAGAAGGAATGGATGAGGACTCTGTGAGTGATCTGAGTTTTGATTCCAGCGAGGATGACATGTTTTTGGAAGGAGAAGATCCAGTTTTCGATCAtgacactgaccccgactgggagcccccagtgccaacttGTCCATCcccctctgaagctggttcatcctcTGGCTCCACACCTTCCGGGCCGTCTAGAGGACCGacaaagaagaggaagaggggaagtgtGCCACCCGCTAACAGAGGGAAAGAAAGGCGTTGGCACACCGTCCTAGAAGACGATGTGGAGCCACCCCAACCAACTTTTAGGCCGAAAAGGAAGCCAGGACCTCAGCTAAACATGACTGCTACGTACAGCCCCCTTCAGCTTTTTCAGCTGTTCTTCACCCAATCCGTTGTAGAGTCGCTCGTGTCTAACACGAATAAGTATGGGAAGATG

Function

NR:

description
uncharacterized protein LOC110511904

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948638.1 False 3839 mRNA 0.50 5 3670220 3678312
XM_036948639.1 False 3773 mRNA 0.50 6 3670220 3678312
TU1616975 True 842 TUCP 0.51 5 3670926 3676021

Neighbor

gene id symbol gene type direction distance location
trnai-uau-4 NA coding upstream 55058 3615069 ~ 3615162 (+)
LOC118940061 NA coding upstream 60235 3608085 ~ 3609985 (+)
LOC110487186 LOC106595670 coding upstream 87507 3573552 ~ 3582713 (+)
LOC118940207 LOC106595687 coding upstream 100864 3563394 ~ 3569356 (+)
LOC110506843 LOC106595654 coding upstream 112895 3551904 ~ 3557325 (+)
LOC110487326 LOC106607542 coding downstream 5265 3683577 ~ 3711129 (+)
LOC110513872 LOC106593751 coding downstream 43142 3721454 ~ 3728602 (+)
LOC118940209 LOC106607538 coding downstream 54857 3733169 ~ 3750932 (+)
LOC110487330 LOC106591998 coding downstream 77499 3755811 ~ 3768943 (+)
LOC110487321 LOC106593224 coding downstream 92346 3770658 ~ 3777928 (+)
G1414461 NA non-coding upstream 20266 3648477 ~ 3649954 (+)
G1414459 NA non-coding upstream 23801 3645725 ~ 3646419 (+)
G1414440 NA non-coding upstream 63390 3605120 ~ 3606830 (+)
G1414431 NA non-coding upstream 67303 3587428 ~ 3602917 (+)
G1414434 NA non-coding upstream 69287 3590393 ~ 3600933 (+)
G1414475 NA non-coding downstream 6988 3685300 ~ 3693680 (+)
LOC118940210 NA non-coding downstream 100186 3778498 ~ 3794005 (+)
G1414519 NA non-coding downstream 119036 3797348 ~ 3800636 (+)
G1414520 NA non-coding downstream 120763 3799075 ~ 3800119 (+)
G1414212 NA non-coding downstream 127773 3806085 ~ 3851350 (+)
G1414430 NA other upstream 77305 3587244 ~ 3592915 (+)
LOC110506850 LOC106593733 other upstream 144234 3519620 ~ 3526117 (+)
LOC118940198 LOC106593831 other upstream 312526 3355122 ~ 3359173 (+)
LOC110513329 LOC106595349 other upstream 382262 3279105 ~ 3288531 (+)
LOC118940192 NA other upstream 678581 2988823 ~ 2992650 (+)
G1414190 NA other downstream 212451 3890763 ~ 3893220 (+)
LOC118940211 NA other downstream 437350 4115570 ~ 4119613 (+)
LOC118940222 NA other downstream 808314 4486626 ~ 4489118 (+)
LOC110533195 LOC106591134 other downstream 813854 4489324 ~ 4500670 (+)
radil LOC106592570 other downstream 953374 4631686 ~ 4726137 (+)

Expression


Co-expression Network