LOC110487326 (LOC106607542)


Basic Information

Item Value
gene id LOC110487326
gene name LOC106607542
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 3683577 ~ 3711129 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948654.1
ggaagaggagaaagaagaagaagagatgaCAGGAGATCTGATTAACGACGgagagagaccagactctcCATCTGACAGCAGAAAGAGTCCTTCAGGGGAACCAGACACTGAGACGCCCAATCCAGCGATGcaacaccactgctcccagtgtaatATGAGTTTTAAGTGGTTATGGAAGCTAAAAGAGCATGAAAGgaaacacacaggagaaaagcccttccaatgctcccagtgtggaaatagATTCTCACGATCACATGACCTAAAAtcacatgagaggacacacacaggggaaaaaccACACAATTGCTCACAGTGTGGAAAGCTTTTTTCCCATTTAGGGAACCTGAACAAACATAAGAGAATACactctggagagaagccttacccctGTTCCCATTGTGGAAAGAATTTTAGGTTGTCAGGTAACCTGAAAacgcatgagaggacacacacaggggagaaaccttaccaTTGCTCCCTGTGTGGTAAGGATTTTACCAAGTTAGGGAACCTGAAAGATCACGAGAAgaaacacacaggagaaaagccttaccactgctccaatTGTGGAAAGAGATTTTCAACATCATCAGACTTAAGAAAGCATGAGATGACGCACACCGGGGAGAAATCTTACCATtgctctcagtgtggaaataGTTTCTTACGATCACATGACCTGAGATCACATGAGCggacacacacaggggaaaaaccACACAgttgttcccagtgtggaaagtgttttttGCATTTAGGGAACCTGAACAAACATAAGAAAATACACtctggggagaagccttacccctGTTCCCATTGTGGAAAATTCTTTAGGTCGTTAGATAACATGAGGGAGCATGAGAAGACACACGCGGGGAAGAAGCTTTACCATTGCGCCTTGTGCGGAAAGAGATATTCACGATCACATGACCTAAAATCACATAAAAGGAAACACACGGGGGAAGAaaacacacaattacacacacaggggaaaaaccACACAGTTGGTCCGAGTGTGGAAAGAATCACACGCAGTTAGAGAACCGTTCCCGTTGTGGAACTATATTTTCCCGATCACATGACCTAAATTCACATCACATCTAACCAAGCTATATTTATTCAGCACATGTCAGACATGGAGTGGAACACAATGGGCTTCACAGGAAAAAACTatgaaaacaaaaactgaaatatttactacacaagaAACAGAAGAGgatataaaaaaaactaaagaTGAACAATAAAAAACATTTGTGCCCAGCTGTGGATAAAACACTGCTAGCATTTGTCTGCTCCATTTTCATGATGGCTAGCAGCTAATTGCTACTTAACAGGAATCCAGGACACAAACTTGCGGTGTCAGCCGTAAAGGCTGTCTGCATTGCGGAACCAATAGCAATTATTTATAATTTTCTTGTGGAGTATTACAACATACAATCTACCTGCAGTGAAGCCGttcaacatttacattacattcagtcatctaGCAGACTCCCGTCCAGAGTGACCCACAGGAGCAACCAGGGTCAAGCGCCCAAAGGGATGTCGACAGATCTCCCAACAAGCCAAATCGAGGACTCaaaccatttatatatatatatattttgtgaaatgaataccaagtatgtctacttcaccatcagcccattttacAGGTAAACTACAGGATCATGTAAAAGCTGTTTTTTGTAAAGgtccaatacgtaatattgtaGACTTGTCATAATTAGGAGTCCAGAAAAGTTATCTTCAATGAGACAGTGAGACAGCTTGaggacttaatataaaacttgagtcatcggacACCTTTTTGTTTTTTAAGCCTCTATTGTTGTTGTTATGATGTCATGATTTATGATGTTAGAGCCGATTTGGACATGTTGGTATAAAAAACAGAACATCCAAGAGctccatgtatgtgtgtgtaaatatatgaAATATTAATGTATATGGTGTATTAGTATTAGGTACCTTTTATGATTTACATTTGTCTGATTGAGATATGTTCCTTTATTATTGTAACTTAGTGTTtggctcctccccctcccctctcgccCATTCATTGTACTGTGGTAAGTGTGTTAGTGATAGGATAAAGGCAGGAAGTTGGGACTTCGGGGTGAGGGGAGTCCTAGCTAGACGCGGGTGCGGTATAGTCTTTTCACCATACAGACATATGAACAGGCCGTTTTTATGTATTTTTCACATCAAGTAAATCTATGCTTTTAAGTTGATTGGAGAATCATTTATTTGTTGGATATAAGAAGAATAAACCTTTTTTTGTTGCACCATA

Function

NR:

description
zinc finger protein 239-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948654.1 True 2299 mRNA 0.41 3 3683577 3711129

Neighbor

gene id symbol gene type direction distance location
LOC118940205 LOC106585892 coding upstream 5265 3670220 ~ 3678312 (+)
trnai-uau-4 NA coding upstream 68415 3615069 ~ 3615162 (+)
LOC118940061 NA coding upstream 73592 3608085 ~ 3609985 (+)
LOC110487186 LOC106595670 coding upstream 100864 3573552 ~ 3582713 (+)
LOC118940207 LOC106595687 coding upstream 114221 3563394 ~ 3569356 (+)
LOC110513872 LOC106593751 coding downstream 10325 3721454 ~ 3728602 (+)
LOC118940209 LOC106607538 coding downstream 22040 3733169 ~ 3750932 (+)
LOC110487330 LOC106591998 coding downstream 44682 3755811 ~ 3768943 (+)
LOC110487321 LOC106593224 coding downstream 59529 3770658 ~ 3777928 (+)
LOC118940210 NA coding downstream 72715 3778498 ~ 3794005 (+)
G1414461 NA non-coding upstream 33623 3648477 ~ 3649954 (+)
G1414459 NA non-coding upstream 37158 3645725 ~ 3646419 (+)
G1414440 NA non-coding upstream 76747 3605120 ~ 3606830 (+)
G1414431 NA non-coding upstream 80660 3587428 ~ 3602917 (+)
G1414519 NA non-coding downstream 86219 3797348 ~ 3800636 (+)
G1414520 NA non-coding downstream 87946 3799075 ~ 3800119 (+)
G1414212 NA non-coding downstream 94956 3806085 ~ 3851350 (+)
G1414547 NA non-coding downstream 131967 3843096 ~ 3844552 (+)
G1414430 NA other upstream 90662 3587244 ~ 3592915 (+)
LOC110506850 LOC106593733 other upstream 157591 3519620 ~ 3526117 (+)
LOC118940198 LOC106593831 other upstream 325883 3355122 ~ 3359173 (+)
LOC110513329 LOC106595349 other upstream 395619 3279105 ~ 3288531 (+)
G1414190 NA other downstream 179634 3890763 ~ 3893220 (+)
LOC118940211 NA other downstream 404533 4115570 ~ 4119613 (+)
LOC118940222 NA other downstream 775497 4486626 ~ 4489118 (+)
LOC110533195 LOC106591134 other downstream 781037 4489324 ~ 4500670 (+)
radil LOC106592570 other downstream 920557 4631686 ~ 4726137 (+)

Expression


Co-expression Network