LOC110513872 (LOC106593751)


Basic Information

Item Value
gene id LOC110513872
gene name LOC106593751
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 3721454 ~ 3728602 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948655.1
ACGGGACGCTTCTTCATACAAGAAAAGCGAGTTATTCATCTCGGTAGCTTTCTAGCCAACATAGCAGATTTTTAAATGCTTTCGTTGTATATTAGCGACTGTGTTTTAAACACACTTGTCGTATCTACTAGATAGTTACACCATTTCATTAAATATTTACGTTGTTgttagtcagctagctagctgggtaAATTAGCAGTAGTGCTAGTCTAGTcactaatgctaactagctatctagctaacatcCCAACCATGAGCTCAGTAAACGACTCCCCCACTTCTAAAGAGGTgatctgctggacggagaaagaaactctggggctgaacattgtcgtgaaagaggagaaggaagaagaggatgtcacagtaaaacaagaaacAGAGgttgaggctgttacagtgaaagaagaagagaaagacgtttcagtgaaagaagaggaagacgcgttcagagtgaaagaggaggaggatgttacagtaaaagaagaggaggaagagaaagaggaggatgcagTTTTTGGAGAGAAAGAAGTgggggagattactgtcacattgGAAGAGGAGACGGGAGATCTGATTAACAACAgagagagaccagtctgtCACTCTGACAGCAGTAAGAGTCCTTCAGAGGAACCAGACCCAGAGACTCCCAAACCAGTGAGACGACTCAACTGCTCCCAGTGTAATAAGAGTTTCAAGTTGTCATTGAACCTAAAAAAgcatgagagaaaacacacaggaggaaaacctttccactgctcccagtgtggaaagagatttTCACGATCACAGAACCTAAAAAAACATagtagaatacacacaggagaaaagccttaccactgttccCATTGTGGAAAGAATTTTAGGTTGTTGGATAAGCTGAAGGAGCATGAGAGGacgcacacaggggagaaaccgtaCCATTGCTCCGTGTGTGGAAAAGGTTTTGCCCAGTTAGCTTACCAAAAAGAGCATGAAAGGAAACACACAGAagaaaagcctttccaatgttcccagtgtggaaagagatttTCCCGATCACAGAACCTAAAAATgcatcagaggacacacacaggggagaaaacGTATctctgttcccagtgtggaaagtgttttacTCATTTATGGAGCCTGAACAAACACAATAGAATGCACACAGGAGAAAAATCTTACCACTGTTCCCATTGTGGACAGAGTTTTAGGTTGTTAGGGAACCTAAAAGAGCATGAAAGGAAACACACAGGCgaaaagcctttccaatgttcccatTGTGGAAAGAGATTTACACGAGCACAGCAACTAAAAtcacatgagaggacacacacaggggagaaaccataccactgctcccagtgtgaaaAAAGTTTTACGCAGTTAGCGAGCCTGAACACTcataagagaatacacacaggagaaacgcCTTACCCCTGTGCCCTATGTGAAAAGAGATTTTCAAGACCACAGGAACTAAAAtcacatgagaggacacacactggggagaaaccataccactgctcccagtgtaaaAAGAGTTTTTCGCTGTTAGGGAGCCTGAACAAACATAATAGAATCCACACcggagaaaagccttaccactgtGCCCATTGTGGAAAGACATTTTCACGATCACAGGACCTAAAAtcacatgagaggacacacacaggagaaaagccttaccccTGTCCCCATTGTGGAAAGAGATTTTCACGATCACATGAACTAAAAtcacatgagaggacacacaccgGGGAGAAACCTTATCATTGCTCCCTGTGTGGAAAGGATTTTTCCCATTTAGGGAGCCTGAACAAACATAAGAAGACAATGCACTCTTGAGTGAAGCCTTACCCATGTTCCCATTCCCAGGCTGTGTTCTGATGAGTCACTGTGTTCTGATGAGTCACTGTGTTCTGACTGATGTTTGACTGTTGTTTTATGCCACATTAAACCATATTGTTTATATTAAATCTTATTCAACAATACGCCTGTTTTTCCTCTGGAGACATGATTATATCTAAAATCAGATTATAATTATATCTCAAATCAGATTATAATTATATCTCAAATCAGATTATAATTATATCTCAAATCAGATTATAATTATATCTCAAATCAGATTA
>XM_036948657.1
ACGGGACGCTTCTTCATACAAGAAAAGCGAGTTATTCATCTCGGTAGCTTTCTAGCCAACATAGCAGATTTTTAAATGCTTTCGTTGTATATTAGCGACTGTGTTTTAAACACACTTGTCGTATCTACTAGATAGTTACACCATTTCATTAAATATTTACGTTGTTgttagtcagctagctagctgggtaAATTAGCAGTAGTGCTAGTCTAGTcactaatgctaactagctatctagctaacatcCCAACCATGAGCTCAGTAAACGACTCCCCCACTTCTAAAGAGGTgatctgctggacggagaaagaaactctggggctgaacattgtcgtgaaagaggagaaggaagaagaggatgtcacagtaaaacaagaaacAGAGgttgaggctgttacagtgaaagaagaagagaaagacgtttcagtgaaagaagaggaagacgcgttcagagtgaaagaggaggaggatgttacagtaaaagaagaggaggaagagaaagaggaggatgcagTTTTTGGAGAGAAAGAAGTgggggagattactgtcacattgGAAGAGGAGACGGGAGATCTGATTAACAACAgagagagaccagtctgtCACTCTGACAGCAGTAAGAGTCCTTCAGAGGAACCAGACCCAGAGACTCCCAAACCAGTGAGACGACTCAACTGCTCCCAGTGTAATAAGAGTTTCAAGTTGTCATTGAACCTAAAAAAgcatgagagaaaacacacaggaggaaaacctttccactgctcccagtgtggaaagagatttTCACGATCACAGAACCTAAAAAAACATagtagaatacacacaggagaaaagccttaccactgttccCATTGTGGAAAGAATTTTAGGTTGTTGGATAAGCTGAAGGAGCATGAGAGGacgcacacaggggagaaaccgtaCCATTGCTCCGTGTGTGGAAAAGGTTTTGCCCAGTTAGCTTACCAAAAAGAGCATGAAAGGAAACACACAGAagaaaagcctttccaatgttcccagtgtggaaagagatttTCCCGATCACAGAACCTAAAAATgcatcagaggacacacacaggggagaaaacGTATctctgttcccagtgtggaaagtgttttacTCATTTATGGAGCCTGAACAAACACAATAGAATGCACACAGGAGAAAAATCTTACCACTGTTCCCATTGTGGACAGAGTTTTAGGTTGTTAGGGAACCTAAAAGAGCATGAAAGGAAACACACAGGCgaaaagcctttccaatgttcccatTGTGGAAAGAGATTTACACGAGCACAGCAACTAAAAtcacatgagaggacacacacaggggagaaaccataccactgctcccagtgtgaaaAAAGTTTTACGCAGTTAGCGAGCCTGAACACTcataagagaatacacacaggagaaacgcCTTACCCCTGTGCCCTATGTGAAAAGAGATTTTCAAGACCACAGGAACTAAAAtcacatgagaggacacacactggggagaaaccataccactgctcccagtgtaaaAAGAGTTTTTCGCTGTTAGGGAGCCTGAACAAACATAATAGAATCCACACcggagaaaagccttaccactgtGCCCATTGTGGAAAGACATTTTCACGATCACAGGACCTAAAAtcacatgagaggacacacacaggagaaaagccttaccccTGTCCCCATTGTGGAAAGAGATTTTCACGATCACATGAACTAAAAtcacatgagaggacacacaccgGGGAGAAACCTTATCATTGCTCCCTGTGTGGAAAGGATTTTTCCCATTTAGGGAGCCTGAACAAACATAAGAAGACAATGCACTCTTGAGTGAAGCCTTACCCATGTTCCCATTCCCAGGCTGTGTTCTGATGAGTCACTGTGTTCTGACTGATGTTTGACTGTTGTTTTATGCCACATTAAACCATATTGTTTATATTAAATCTTATTCAACAATACGCCTGTTTTTCCTCTGGAGACATGATTATATCTAAAATCAGATTATAATTATATCTCAAATCAGATTATAATTATATCTCAAATCAGATTATAATTATATCTCAAATCAGATTATAATTATATCTCAAATCAGATTA

Function

NR:

description
PREDICTED: zinc finger protein 135-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948655.1 False 2123 mRNA 0.42 3 3721454 3728602
XM_036948657.1 True 2105 mRNA 0.42 3 3721454 3728602

Neighbor

gene id symbol gene type direction distance location
LOC110487326 LOC106607542 coding upstream 10325 3683577 ~ 3711129 (+)
LOC118940205 LOC106585892 coding upstream 43142 3670220 ~ 3678312 (+)
trnai-uau-4 NA coding upstream 106292 3615069 ~ 3615162 (+)
LOC118940061 NA coding upstream 111469 3608085 ~ 3609985 (+)
LOC110487186 LOC106595670 coding upstream 138741 3573552 ~ 3582713 (+)
LOC118940209 LOC106607538 coding downstream 4567 3733169 ~ 3750932 (+)
LOC110487330 LOC106591998 coding downstream 27209 3755811 ~ 3768943 (+)
LOC110487321 LOC106593224 coding downstream 42056 3770658 ~ 3777928 (+)
LOC118940210 NA coding downstream 55242 3778498 ~ 3794005 (+)
LOC110487318 LOC106594474 coding downstream 66856 3795458 ~ 3803579 (+)
G1414475 NA non-coding upstream 27774 3685300 ~ 3693680 (+)
G1414461 NA non-coding upstream 71500 3648477 ~ 3649954 (+)
G1414459 NA non-coding upstream 75035 3645725 ~ 3646419 (+)
G1414440 NA non-coding upstream 114624 3605120 ~ 3606830 (+)
G1414431 NA non-coding upstream 118537 3587428 ~ 3602917 (+)
G1414519 NA non-coding downstream 68746 3797348 ~ 3800636 (+)
G1414520 NA non-coding downstream 70473 3799075 ~ 3800119 (+)
G1414212 NA non-coding downstream 77483 3806085 ~ 3851350 (+)
G1414547 NA non-coding downstream 114494 3843096 ~ 3844552 (+)
G1414430 NA other upstream 128539 3587244 ~ 3592915 (+)
LOC110506850 LOC106593733 other upstream 195468 3519620 ~ 3526117 (+)
LOC118940198 LOC106593831 other upstream 363760 3355122 ~ 3359173 (+)
LOC110513329 LOC106595349 other upstream 433496 3279105 ~ 3288531 (+)
G1414190 NA other downstream 162161 3890763 ~ 3893220 (+)
LOC118940211 NA other downstream 387060 4115570 ~ 4119613 (+)
LOC118940222 NA other downstream 758024 4486626 ~ 4489118 (+)
LOC110533195 LOC106591134 other downstream 763564 4489324 ~ 4500670 (+)
radil LOC106592570 other downstream 903084 4631686 ~ 4726137 (+)

Expression


Co-expression Network