LOC118940209 (LOC106607538)


Basic Information

Item Value
gene id LOC118940209
gene name LOC106607538
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 3733169 ~ 3750932 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948660.1
GCCTGTTTCAGGGCAATGCTGCcggtgtgacgtataatctaatGGACGGGACGCTTCTTCAAACAACAACAGCGAGTTATTCACCTCCGTAGCTTTCGAGCACCTCGGTATCTCACTAGCCAACATAGACGATAAAATTGCAGATCTTTAAATGCTTTCGTTGTATATTAGCCACTGTGTTTTAAACACACTTGTCGTATCTCCTGGTTAGTTACCCAATTTAATATTTAcgttgttgttagctagctagctgggtaAATTAGCAGTGCTAGTCTAGTcactaatgctaactagctaactaactaacatcccagaccatgagttcactaagctGCTCTCCTCCTGTTAAAGAAGAgggggtctgctggacggagaaagaaactctggggctgaacattgtcgtgaaagaggagaaggaagaagaggatgtcacagtaaaacaagaaacAGAGgttgaggctgttacagtgaaagaagaagagaaagaggttAAATTGACAGAAGATGAAaacgcgttcagagtgaaagaggaggaggatgttacagtaaaagaagaggaggaagaagagggggaggagggggagatgtctgtcacagtgaaagaagaggaagacgtcTTTGGAATGAAGGAAGTgggggagattactgtcacattggaggaggaagaagaagaggagacaggagatctGATTAACAACAgagagagaccagactctcACTCTGACAGACGGAAGAAGAGTCCTTCAGGGGAACCAGACCCAGAGACGCCCAAACCAGGGAGAcgacaccactgctcccagtgtaatTTGAGTTTTAAGTTTTTATGGAAGCTGAAACAGCATGAGAGgatgcacacaggggagaagccacaccactgctcccagtgtggaaagagttttaccctgTTAGGGAACCTGAAAAAGCATAAaggaatacacacaggagaaaagcctttccaatgttcccagtgtggaaagagatttTCACGATCACAGGAACTAAAATCACATGAGATGAAACACACTGGGGATAAAccacaccactgctcccagtgtggaaagagttttacccagttAGGGACCCTGAACAAAcataagagaatacacacaggagaaaggccttaccactgctcccagtgtggaaagagttttataCAGTTAGGGAACCTGAACAACCATAATATAATACACACAGAagaaaagcctttccaatgttTCTACTGTGGAAAGAGATTTTCACGATCACAGGACCTAAAATCACATGAGATGATACACACGGGGGAGAAACCACACCACTGCAcccattgtggaaagagttttacacaGTTGGGAAGTCTGAACAAACATAAGAAGAGAATACACTCTGGAGAGAAATCTTAACATACTTTCCCAGTCAGAGGACCTGTAATCacatgacagaacagagaggCTGTGTTCTGACTTATGTTTTAGAGGTAGTTTTTAAATTAAATGTtgatataaaaaaatatgatttgGATATTTTAAAATAACAATTATTAAATAGATTAGTAGGATGTGCATTTCTTGATTTTAACCTAGAAATGACATGAATTGAGTTAATGTGTATACTAGTCTTCACCCTAAAAGGTTTATGAACATTTGATGACGTTGTTCTGATGACGTTGACAATTTTGTTGACACGAAGAACACTCACTTCCTCATGAATGTTCCCATCAGTATTATTCCACCATGTCAGAGAAAACACAGGTGCTGATTTGATTAATGGAACATATTGTTGTCTGAATATAAATATAATGTGGCACTAGTGGAcattcattatatacatctgtgTATtgttacattatacattatagaCCTAGGTgcttatttttaattttttttattatatatgtTTGTTTGACTGAATGAACCAGAAATTGCCTAATGTGCATGTGTGTAGTAGATGTTAAGTTTGTTTTCAATTCTAACTCATTAAAAATGTTCACTAATCAA

Function

NR:

description
zinc finger protein 436-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948660.1 True 1973 mRNA 0.40 2 3733169 3750932

Neighbor

gene id symbol gene type direction distance location
LOC110513872 LOC106593751 coding upstream 4567 3721454 ~ 3728602 (+)
LOC110487326 LOC106607542 coding upstream 22040 3683577 ~ 3711129 (+)
LOC118940205 LOC106585892 coding upstream 54857 3670220 ~ 3678312 (+)
trnai-uau-4 NA coding upstream 118007 3615069 ~ 3615162 (+)
LOC118940061 NA coding upstream 123184 3608085 ~ 3609985 (+)
LOC110487330 LOC106591998 coding downstream 4879 3755811 ~ 3768943 (+)
LOC110487321 LOC106593224 coding downstream 19726 3770658 ~ 3777928 (+)
LOC118940210 NA coding downstream 32912 3778498 ~ 3794005 (+)
LOC110487318 LOC106594474 coding downstream 44526 3795458 ~ 3803579 (+)
LOC118936460 LOC106592292 coding downstream 56199 3807131 ~ 3814967 (+)
G1414475 NA non-coding upstream 39489 3685300 ~ 3693680 (+)
G1414461 NA non-coding upstream 83215 3648477 ~ 3649954 (+)
G1414459 NA non-coding upstream 86750 3645725 ~ 3646419 (+)
G1414440 NA non-coding upstream 126339 3605120 ~ 3606830 (+)
G1414434 NA non-coding upstream 132236 3590393 ~ 3600933 (+)
G1414519 NA non-coding downstream 46416 3797348 ~ 3800636 (+)
G1414520 NA non-coding downstream 48143 3799075 ~ 3800119 (+)
G1414212 NA non-coding downstream 55153 3806085 ~ 3851350 (+)
G1414547 NA non-coding downstream 92164 3843096 ~ 3844552 (+)
G1414430 NA other upstream 140254 3587244 ~ 3592915 (+)
LOC110506850 LOC106593733 other upstream 207183 3519620 ~ 3526117 (+)
LOC118940198 LOC106593831 other upstream 375475 3355122 ~ 3359173 (+)
LOC110513329 LOC106595349 other upstream 445211 3279105 ~ 3288531 (+)
G1414190 NA other downstream 139831 3890763 ~ 3893220 (+)
LOC118940211 NA other downstream 364730 4115570 ~ 4119613 (+)
LOC118940222 NA other downstream 735694 4486626 ~ 4489118 (+)
LOC110533195 LOC106591134 other downstream 741234 4489324 ~ 4500670 (+)
radil LOC106592570 other downstream 880754 4631686 ~ 4726137 (+)

Expression


Co-expression Network