LOC110487330 (LOC106591998)


Basic Information

Item Value
gene id LOC110487330
gene name LOC106591998
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 3755811 ~ 3768943 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948658.1
GGTGGCGATGTGCCTGTTTCAGGGCAATGCTGCcggtgtgacgtataatctaatGGACGGGACGCTTCTTCATACAACAGCGAGTTATTCACCTCCGTAGCTTTCGAGCACCTCGGTATCTTACTAGCCAACATAGACGATAAAATTGCAGATCTTTAAATGCTTTCGTTGTATATTAGCCACTGTGTTTTAAACACACTTGTCGTATCTATTAGCTAGTTACACCATTGAATTTAATATTTACGttgttgttagctagctggctagctgggTAAATTAGCAGTAGTGCTAGTCTAGTCACTAACTAACTAGCTGTCTAGCTAACATCCCGACCATGAGCTCACTAATCGACTCCCCACCTTCTGAAGAgggggtctgctggacggagaaagaaactctggggctgaacattgtcgtgaaagaggagaaggaagaagatgatgtcacagtaaaacaagaaacAGAGgttgaggctgttacagtgaaagaagaagagaaagacgttaaATTGACAGAAGAGGgagacgcgttcagagtgaaagaggaagaggatgttacagtaaaagaagaggaggaggatgccgTTTTTGGATTGGGGGAGGTGACTGTCACAttggaagaagaggagaaaggagatcTGATTAACAACAgagagagaccagactctcACTCTGAGAGACGAAAGAAGAGTCCTTCAGGGGAACCAGACCCAGAGACGCCCAAACCAGTGAGAcgacaccactgctcccagtgtaatTTGAGTTTTAAGTGGTTATGGAAGCTGAAAcagcatgagaggacacacacaggggagaagccacaccactgctcccagtgtggaaagagttttaccctgTTAGGGAACCTGAAAAAGCATAAaggaatacacacaggagaaaagcctttccaatgttcccagtgtggaaagagatttTCACGATCACAGCACCTAAAAtcacatgagaggacacacacaggggagaagccacaccactgctcccagtgtggaaagagttttactcagttgGGGAGCCTGAAAAAGCATAAaggaatacacacaggagaaaaacctttccaatgttcccagtgtggaaagaaaTTTTCAGGATTGCATCACCTAAAATCAcacgagaggacacacacaggggagaagccacaCCATTGTGCCCTGTGTGGAAAGGATTTTACCCAGTTAGGGAACCTAAAAAAACATCAGATgaaacacacaggagaaaagcctttccaatgttcccGGTGTGGGAAAAGATTTTCACGGTCACAGGAACTAAAATCACATGAGATGACACACACGGGGGAGAAAccacaccactgctcccagtgtgggaaAAGTTTTACCCAGTTAGGGAGCCTGAACAAACATAAGAGAATACActcaggagaaaagccttaccactgctcccagtgtggaaagagttttacccagttAGGGAACCTGAACAACCATAATATAATACACACAGAAGAAAAGCCgttccaatgttcccagtgtggaaagagatttTCACGATCACAGGACCTAAAATCACACGAAAGGACACACACGGGGGAGAAACCACACCACTGCACCCATTGTGGAATGCGTTTTACCCAGTTAGGAAGCCTGAACAAACATAAGAAGAGAATACACTCTGGAGAGAAATCTTAACATACTTTCCTGGACAGAGGACCTGAAATCACATGACAGAATAGAGGCTGTGTACTgacgtatgtttttttttttcattaaatgTTAATATGAAAAATATGATTTTGGATATTTTAAAATTACAATTATTAAATAGATTAGTAGAATGTGCATTTCTTGATTTTAACCTAGAAATGTTATGAATTTAGTAAGAAGCATTTTATCAAAGCAACATATATTTTAATATAAATCTCAATATCTAGTGAacgttcattatatacatctacatgatgtattgttacaccatgtaggagcagtatagacctagtctgttcattatatacatctacatgatgtattgttacaccatgtagtagcagtatagacctagtctgttcattatatacatctgtgTATTGTTActtgtaggagcagtatagacctagatgCTTATTTTGAAATATTGTGATATTTTCTGTTTATTTGACTGAATTAATCAGAAATTGCCTA
>XM_021559256.2
GGTGGCGATGTGCCTGTTTCAGGGCAATGCTGCcggtgtgacgtataatctaatGGACGGGACGCTTCTTCATACAACAGCGAGTTATTCACCTCCGTAGCTTTCGAGCACCTCGGTATCTTACTAGCCAACATAGACGATAAAATTGCAGATCTTTAAATGCTTTCGTTGTATATTAGCCACTGTGTTTTAAACACACTTGTCGTATCTATTAGCTAGTTACACCATTGAATTTAATATTTACGttgttgttagctagctggctagctgggTAAATTAGCAGTAGTGCTAGTCTAGTCACTAACTAACTAGCTGTCTAGCTAACATCCCGACCATGAGCTCACTAATCGACTCCCCACCTTCTGAAGAgggggtctgctggacggagaaagaaactctggggctgaacattgtcgtgaaagaggagaaggaagaagatgatgtcacagtaaaacaagaaacAGAGgttgaggctgttacagtgaaagaagaagagaaagacgttaaATTGACAGAAGAGGgagacgcgttcagagtgaaagaggaagaggatgttacagtaaaagaagaggaggaggatgccgTTTTTGGATTGGGGGAGGTGACTGTCACAttggaagaagaggagaaaggagatcTGATTAACAACAGGGAGAGACCAGACCCTCACTCTGACAGCAGGAAGAGTCCTTCAGGGGAACCAGACCCTCACTCTGACAGCAGGAAGAGTCCTTCAGGGGAACCAGACCGAGAGATGCCCAAACCAACAGGACGACACCACTGTTCCCACTGTGGAAATAATTTTACTCATTTACGGAGTCTGAAAATGCACAagagaatacatacaggagaaaagccttaccaatGTTCCCATTGTGAAAAGAGTTTTATCTATCGAGGGAGCCTGAAaatgcatgagagaatacacacaggagaaaagccttaccaatgttcccagtgtgaaAGGAGTTTTACCCGATCATGGAACCTGAAaaagcatgagaggacacacacaggagaaaagtctttccaacatactaacacacaggaggagaagacataccactgctctcattgtggaaagacattttcccagtcagaggacctgaaatcacacgagagaatagagaggctgtgttctgacttgtgtttttgattttaaaatgtgtttttatgaCCATTAAATGAAATGGCATGCATTaaagttattttttttaatagacCTACTTGAGAAATTAAATAAAATGTGTTATgttaaaatgtgtatttt
>XM_036948659.1
GGTGGCGATGTGCCTGTTTCAGGGCAATGCTGCcggtgtgacgtataatctaatGGACGGGACGCTTCTTCATACAACAGCGAGTTATTCACCTCCGTAGCTTTCGAGCACCTCGGTATCTTACTAGCCAACATAGACGATAAAATTGCAGATCTTTAAATGCTTTCGTTGTATATTAGCCACTGTGTTTTAAACACACTTGTCGTATCTATTAGCTAGTTACACCATTGAATTTAATATTTACGttgttgttagctagctggctagctgggTAAATTAGCAGTAGTGCTAGTCTAGTCACTAACTAACTAGCTGTCTAGCTAACATCCCGACCATGAGCTCACTAATCGACTCCCCACCTTCTGAAGAgggggtctgctggacggagaaagaaactctggggctgaacattgtcgtgaaagaggagaaggaagaagatgatgtcacagtaaaacaagaaacAGAGgttgaggctgttacagtgaaagaagaagagaaagacgttaaATTGACAGAAGAGGgagacgcgttcagagtgaaagaggaagaggatgttacagtaaaagaagaggaggaggatgccgTTTTTGGATTGGGGGAGGTGACTGTCACAttggaagaagaggagaaaggagatcTGATTAACAACAgagagagaccagactctcACTCTGAGAGACGAAAGAAGAGTCCTTCAGGGGAACCAGACCCAGAGACGCCCAAACCAGTGAGAcgacaccactgctcccagtGGGAGAGACCAGACCCTCACTCTGACAGCAGGAAGAGTCCTTCAGGGGAACCAGACCCTCACTCTGACAGCAGGAAGAGTCCTTCAGGGGAACCAGACCGAGAGATGCCCAAACCAACAGGACGACACCACTGTTCCCACTGTGGAAATAATTTTACTCATTTACGGAGTCTGAAAATGCACAagagaatacatacaggagaaaagccttaccaatGTTCCCATTGTGAAAAGAGTTTTATCTATCGAGGGAGCCTGAAaatgcatgagagaatacacacaggagaaaagccttaccaatgttcccagtgtgaaAGGAGTTTTACCCGATCATGGAACCTGAAaaagcatgagaggacacacacaggagaaaagtctttccaacatactaacacacaggaggagaagacataccactgctctcattgtggaaagacattttcccagtcagaggacctgaaatcacacgagagaatagagaggctgtgttctgacttgtgtttttgattttaaaatgtgtttttatgaCCATTAAATGAAATGGCATGCATTaaagttattttttttaatagacCTACTTGAGAAATTAAATAAAATGTGTTATgttaaaatgtgtattttgtttTG

Function

NR:

description
zinc finger protein 287-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948658.1 False 2155 mRNA 0.41 2 3755811 3764145
XM_021559256.2 False 1270 mRNA 0.43 2 3755811 3768937
XM_036948659.1 True 1378 mRNA 0.44 3 3755811 3768943

Neighbor

gene id symbol gene type direction distance location
LOC118940209 LOC106607538 coding upstream 4879 3733169 ~ 3750932 (+)
LOC110513872 LOC106593751 coding upstream 27209 3721454 ~ 3728602 (+)
LOC110487326 LOC106607542 coding upstream 44682 3683577 ~ 3711129 (+)
LOC118940205 LOC106585892 coding upstream 77499 3670220 ~ 3678312 (+)
trnai-uau-4 NA coding upstream 140649 3615069 ~ 3615162 (+)
LOC110487321 LOC106593224 coding downstream 1715 3770658 ~ 3777928 (+)
LOC118940210 NA coding downstream 14901 3778498 ~ 3794005 (+)
LOC110487318 LOC106594474 coding downstream 26515 3795458 ~ 3803579 (+)
LOC118936460 LOC106592292 coding downstream 38188 3807131 ~ 3814967 (+)
LOC110516207 LOC106592850 coding downstream 57014 3825957 ~ 3829616 (+)
G1414475 NA non-coding upstream 62131 3685300 ~ 3693680 (+)
G1414461 NA non-coding upstream 105857 3648477 ~ 3649954 (+)
G1414459 NA non-coding upstream 109392 3645725 ~ 3646419 (+)
G1414440 NA non-coding upstream 148981 3605120 ~ 3606830 (+)
G1414434 NA non-coding upstream 154878 3590393 ~ 3600933 (+)
G1414519 NA non-coding downstream 28405 3797348 ~ 3800636 (+)
G1414520 NA non-coding downstream 30132 3799075 ~ 3800119 (+)
G1414212 NA non-coding downstream 37142 3806085 ~ 3851350 (+)
G1414547 NA non-coding downstream 74153 3843096 ~ 3844552 (+)
G1414430 NA other upstream 162896 3587244 ~ 3592915 (+)
LOC110506850 LOC106593733 other upstream 229825 3519620 ~ 3526117 (+)
LOC118940198 LOC106593831 other upstream 398117 3355122 ~ 3359173 (+)
LOC110513329 LOC106595349 other upstream 467853 3279105 ~ 3288531 (+)
G1414190 NA other downstream 121820 3890763 ~ 3893220 (+)
LOC118940211 NA other downstream 346719 4115570 ~ 4119613 (+)
LOC118940222 NA other downstream 717683 4486626 ~ 4489118 (+)
LOC110533195 LOC106591134 other downstream 723223 4489324 ~ 4500670 (+)
radil LOC106592570 other downstream 862743 4631686 ~ 4726137 (+)

Expression


Co-expression Network