LOC110487321 (LOC106593224)


Basic Information

Item Value
gene id LOC110487321
gene name LOC106593224
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 3770658 ~ 3777928 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948678.1
gtgaaagaagaggaagacgcgttcagagtgaaagaggaggaggatgttacagtaaaagaagaggaggaggatgcagtttttggagtgaaagaggaagaggaggagatgactgtcacatataaaatggaggaggaagaagaagaggaggaaactggatatctgggcccggtttcccaaacgcaTCTTATGTCATCCAATGGTTCTAACGGTGAACTTAACCGTAAGATGGTTTTGAGAAACCGTTccctgattaacactagagagatacGGGACTATCATGGATCCTCTGgagagcctcaacaacatcatgaagctgacgaggcagagaagagtccctccagatcagaacacctcaagaaacaccagcGGAAACCCACAAGGAAGAAATCtcaccactgctctgactgtgggaagagattcacctcTTCAACAGACCTTAAAAGACATcagagaatacatacaggagagaaaccttatagttgTGATtggtgtgggaagagttttactacgtCTAGCCAGctgactatacaccagagaatacacacaggagagaaaccttaccactgctctgactgtggaacaAGTTTTGTTTCTTCCCAATACTTAAAATCacacaagagaacacacacaatagcgaaaccttaccactgctctgactgtggaaagtgTTTCGTTTCGTCACAATATTTAAAATCacaccagaaaacacacacaggtgagaagctttatagctgtgatcaatgtgggaagagttttagtcACTCAAGCAACCTGATGGTACATTTGAGAatgcacactggagagaaaccttatagctgtgatcaatgcgGCAAGAGTTTTACTTCATCTAGTCAGCTGACTATacacaagagaacacacacaggagataaaccttaccactgctctgactgtggaaagagttttgtttCGTCCCAATATTTAAAATCACACCAGAAAACACAcaaaggagagaagccttatagctgtgatcaatgtgggaggagttttactCACTCAAGCAAcatgatatcacaccagagaacacacacaggagcgaAACCTTGtggctgtaatcaatgtgggaagaggttTACTCAGCCAAACATCCTGATAGCCCACCAGagaactcacacaggagagaagccttatagctgtgatcaatgtggcaAGAATTACGCTGGTAAAAGATCTCTGataaaacatcagaaaatacatacatgaaggagttgtttcatgatatcaatgaaatgatgtcacaatgtagaatgttttaacattgtagtaggagtgttctaatgatgtcacaatgtagaatgctttaacattgtagtaggagtgttctaatgatgtcacaatgtagaatgctttaacattgtagtaggagtattctAATGATGTCATAATGTAGAACCCTAAATGTTTGTCCCCTGTTCTGTTGATTTcagcatgatatggatattagcctcaTTGGGAAAAGTAcaggctctgaattgaaagagTACTATTTATGTGATTAACATAAACACAAATAAAGTGTAGCATTTCAC

Function

NR:

description
zinc finger protein 239-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948678.1 True 1547 mRNA 0.41 2 3770658 3777928

Neighbor

gene id symbol gene type direction distance location
LOC110487330 LOC106591998 coding upstream 1715 3755811 ~ 3768943 (+)
LOC118940209 LOC106607538 coding upstream 19726 3733169 ~ 3750932 (+)
LOC110513872 LOC106593751 coding upstream 42056 3721454 ~ 3728602 (+)
LOC110487326 LOC106607542 coding upstream 59529 3683577 ~ 3711129 (+)
LOC118940205 LOC106585892 coding upstream 92346 3670220 ~ 3678312 (+)
LOC118940210 NA coding downstream 5916 3778498 ~ 3794005 (+)
LOC110487318 LOC106594474 coding downstream 17530 3795458 ~ 3803579 (+)
LOC118936460 LOC106592292 coding downstream 29203 3807131 ~ 3814967 (+)
LOC110516207 LOC106592850 coding downstream 48029 3825957 ~ 3829616 (+)
LOC110487310 LOC106594479 coding downstream 59856 3837784 ~ 3888090 (+)
G1414475 NA non-coding upstream 76978 3685300 ~ 3693680 (+)
G1414461 NA non-coding upstream 120704 3648477 ~ 3649954 (+)
G1414459 NA non-coding upstream 124239 3645725 ~ 3646419 (+)
G1414440 NA non-coding upstream 163828 3605120 ~ 3606830 (+)
G1414434 NA non-coding upstream 169725 3590393 ~ 3600933 (+)
G1414519 NA non-coding downstream 19420 3797348 ~ 3800636 (+)
G1414520 NA non-coding downstream 21147 3799075 ~ 3800119 (+)
G1414212 NA non-coding downstream 28157 3806085 ~ 3851350 (+)
G1414547 NA non-coding downstream 65168 3843096 ~ 3844552 (+)
G1414430 NA other upstream 177743 3587244 ~ 3592915 (+)
LOC110506850 LOC106593733 other upstream 244672 3519620 ~ 3526117 (+)
LOC118940198 LOC106593831 other upstream 412964 3355122 ~ 3359173 (+)
LOC110513329 LOC106595349 other upstream 482700 3279105 ~ 3288531 (+)
G1414190 NA other downstream 112835 3890763 ~ 3893220 (+)
LOC118940211 NA other downstream 337734 4115570 ~ 4119613 (+)
LOC118940222 NA other downstream 708698 4486626 ~ 4489118 (+)
LOC110533195 LOC106591134 other downstream 714238 4489324 ~ 4500670 (+)
radil LOC106592570 other downstream 853758 4631686 ~ 4726137 (+)

Expression


Co-expression Network