LOC118940210


Basic Information

Item Value
gene id LOC118940210
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 3778498 ~ 3794005 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948674.1
tctagtggacggaacttTCTTTCtttcaacagcaacaacagctcgtcagacacctcggtagcttgATAGACAAAATAGCCGAACCAATACATTACTTTAGACGCTTTAGTGTATATTAGCCACTGTGTTTTAAACCCACTTCTATCGTCTAGTTAGTTATccgatttaatttcatatttacggtgttgttattagtcagctagcgggctggttaagttagcattagcctagctatctaacatccccgaccatgagttcactaagctactctcctcctgCTGAAGAAGAGGAGGTCTCCTGGACGGAGAAAGATGCTctcgtgaaagaggaggaggaagaggaggctgttacagtacaaaaacaagtagaggttGAGGCTTTTACCGTGAAacaagaagagaaagacgttactgtgaaagaagaggaagacacgttcagagtgaaagaggaggaggatgttacagtaaaagaagaggaggaagagaaagaggaggatgtaggggaggagggggagatgactgtcacatcgaaaaaggaggaggaacctggatatctgggcccggtttcccaaaagcaacTCAAGGCGTCCAATGGTTCTAACGGTGAACTTAGCAGTAATATGGTTTTGAGAAAACGGGCCCCgattaacactagagagagacctgACTATCGGGGATCATCTGgagagcctcaacaacatcatgaaGCTGACGAGGCAGAGGAGAGTccctccagatcagaacacctcaagaaacaccagcGGAAACCCACAAGGAAGAAATCTCgccactgctctgactgtggaaagagattCACCTCTTCAACAGACCTTAAAAGACATCAGAGAATCcatacaggagagaaatcttatagctgtgatcaatgtgggaagagttttagtgTTACAAGCAGCCTGAAAGCacaccagaaaacacacacaagagagaaatcttatagttgtgatcaatgtgggaagagttttgttacaTCTAGCATTCTGActacacaccagagaacacacacaggagagaaaccttatagttgTGAtcggtgtgggaagagttttactacatctaaccagctgactatacaccagagaatacacacaggagagaaaccttaccactgctctgactgtggaaggAGTTTTGTTTCTTCCCAATATTTAAAATCacacaagagaacacacacaatagcgaaaccttaccactgctctgactgtggaaaatgttttGTTTCTTCACAATATTTAAAATCacaccagaaaacacacacaggtgagaagccttatagctgtgatcaatgtgggaagagatttagtCACTCAAGCAACCTGATGGTACATTTGAGAacgcacacaggagagaaaccttataggtgtgatcaatgtgggaagagttttacttcaTTTAGCCAGCTGACTATacacaagagaacacacacaggagataaacCTTACCACTGcgctgactgtggaaagagttttgtttCGTCCCAAAATTTAAAATCacacaagaaaacacacacaggagaaaagccttatagctgtgatcaatgtgggaggagttttactCACTCAAGGAAcatgatatcacaccagagaacacacacaggatagaAATATTGTGGCTGTAATcaatgcaagttcaaacccccgagctgtcatggtacaaatctgtcgttctgcccctgaacaagacagttaacccactgttcctaggccgtcattgaaaataagaatttgttcataactggcttgcctagttaaatgaaggtgaaattaaATACACCTTTTGGAAGATGTTTACTCAGGCAAACATCCTGATAgcccaccagagaacacacagagaatTCTTATAGCTGtgttcaatgtgggaagagttactCTGGTAAAAGATCTCTGATAAAACATCAGAAAGTACATACATGAAGGGGTTatttcatgatatcaatgaaataatgtcacaatgtagaatgttttaacattgtagtaggagtattttaatgatgtcacaatgtagaatgttttaacattgtagtaggagtgttctaatgatgtcacaatgtagaatgctgtagaacattgtagtagaagtattttaatgatgtcataaTGTAGAACCCTAAGCGTTTGTCccctgttctattgatttcagcatgatatggatattagcctcaTTGGGAAAAATAcaggctctgaattgaaagagTACTATTTATATGATTAACATAAACACAAATAACGTGTTGCGTTTTACTTCCCGCGTTGGCGACCTACTTGAATCAAACTGACACACTttaaaatgtagctagctgttttctacaagttgtcctctaaccaggggtgtacacattattcccagattccATGTGGTGTTTGAGCTGTTTTAACAGGACGTGAAacctcatctctcccctctcgcGCAATTGATTTCAACTTGATATCGATATGAGTGATGATATTTAAGTGTTGCGTTTCTCTTAGTTTTGGGGACTCCTAAATTTAAATGCATCATTCCAAcatgtagctgactgtcttctgcaggttgtcctctaaccagtgagataaaagatatctcccattttcatgtgtttgtttaggttgtgttagtttcaacagcacgtACAACCTAATTTCCCCCCTAATTGATATCAGTGATGTATTTGATACTTGTCAAAACAACAGCGTTGTTGGTAGTTTATACGGTGCTCGTTTAGAAAAATACAAGAGATGTGATTAACATGTGGAACATGTTTGTTTCGATAGTAAATATTATGTTTAGGTTTTCAATGTATCAcaaactgtttctgcatattggttattgattttTACACGTTAAAATTGTTTTGACATTGGGGCTATCCCGCCTATCAAAATGTTGTTGAAAAGACGTTGAAAATAAGACTATGTCCGACGTCCAATCTACGTTCGGTTTTGGTTGAAAGTTGAACAAACTGTTTCCAGGTTTCAATGACAACAAAACAACTCAATTCCAACGTACTTGCAGCCTATACATATGGATGCGGTATAATTTTAAAAACTTGGACCAACTTAAACAATCATACATCATTCCAGCATTAACACACAGTATTTCTTTACAACGTTCAAGTGCTAATTGTCtttattccactactgaagaagcatgactcaaatcacctcatatttcaaacattcagcctgacaaaatatacatgttttattattccatGCCTCACCATTAAGTGAAGTATTGCCAATACATATTAACAAAGGGGTGTACATTCGGTTTTGATATTTCATAATATTTCAATGTAACATTTAGTAGTCACAATGTATGCGACTAACTGAATTTTTATTGGTACAATTATATTGTTTACTAACAATGTAGTAAAACTAGTTTATATTTCTGGTTGGATGTTACATCCTATTCTTACTATTTTAATGTCTTTTCCTTAGAGTGATCATTAGTCTttcagtttttattgttattctttAGTTTTTCTATGCTCTTATGTTCGTTGGGTTGTAaacatttcagtttttattttcatGGTTTCTTATTACGTGTGAAGAGCATTGTGTTGTATCcgtgtctgaaatgtgctgtataaataaagctggatttgatttgaa
>TU1616601
GTTAAAATTGTTTTGACATTGGGGCTATCCCGCCTATCAAAATGTTGTTGAAAAGACGTTGAAAATAAGACTATGTCCGACGTCCAATCTACGTTCGGTTTTGGTTGAAAGTCGGAAAAACTGTTTCCAGGTTTCAATGACATCAAAACAACTCAATTCCAGCGTACTTGCAGCCTATACATATGGATGCGGTATAATTTTTAAAACTTGGACCAACTTATGAACGATTTTTTTAAACAATCATACATCATTCCAGCATTAACACACAGTATTTCTTTACAACGTTCAAGTGCTAATTGTCtttattccactactgaagaagcatgactcaaatcacctcatatttcaaacattcagcctgacaaaatatacatgttttattattccatGCCTCACCATTAAGTGAAGTATTGCCAATACATATTAACAAAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948674.1 False 3613 mRNA 0.38 2 3783844 3794005
TU1616601 True 434 lncRNA 0.35 2 3778498 3793646

Neighbor

gene id symbol gene type direction distance location
LOC110487321 LOC106593224 coding upstream 5916 3770658 ~ 3777928 (+)
LOC110487330 LOC106591998 coding upstream 14901 3755811 ~ 3768943 (+)
LOC118940209 LOC106607538 coding upstream 32912 3733169 ~ 3750932 (+)
LOC110513872 LOC106593751 coding upstream 55242 3721454 ~ 3728602 (+)
LOC110487326 LOC106607542 coding upstream 72715 3683577 ~ 3711129 (+)
LOC110487318 LOC106594474 coding downstream 1453 3795458 ~ 3803579 (+)
LOC118936460 LOC106592292 coding downstream 13126 3807131 ~ 3814967 (+)
LOC110516207 LOC106592850 coding downstream 31952 3825957 ~ 3829616 (+)
LOC110487310 LOC106594479 coding downstream 43779 3837784 ~ 3888090 (+)
LOC110487309 LOC106594479 coding downstream 99455 3893460 ~ 3914294 (+)
G1414475 NA non-coding upstream 90164 3685300 ~ 3693680 (+)
G1414461 NA non-coding upstream 133890 3648477 ~ 3649954 (+)
G1414459 NA non-coding upstream 137425 3645725 ~ 3646419 (+)
G1414440 NA non-coding upstream 177014 3605120 ~ 3606830 (+)
G1414434 NA non-coding upstream 182911 3590393 ~ 3600933 (+)
G1414519 NA non-coding downstream 3343 3797348 ~ 3800636 (+)
G1414520 NA non-coding downstream 5070 3799075 ~ 3800119 (+)
G1414212 NA non-coding downstream 12080 3806085 ~ 3851350 (+)
G1414547 NA non-coding downstream 49091 3843096 ~ 3844552 (+)
G1414167 NA non-coding downstream 94470 3888475 ~ 3889703 (+)
LOC118940205 LOC106585892 other upstream 107823 3670220 ~ 3678312 (+)
G1414430 NA other upstream 190929 3587244 ~ 3592915 (+)
LOC110506850 LOC106593733 other upstream 257858 3519620 ~ 3526117 (+)
LOC118940198 LOC106593831 other upstream 426150 3355122 ~ 3359173 (+)
LOC110513329 LOC106595349 other upstream 495886 3279105 ~ 3288531 (+)
G1414190 NA other downstream 96758 3890763 ~ 3893220 (+)
LOC118940211 NA other downstream 321657 4115570 ~ 4119613 (+)
LOC118940222 NA other downstream 692621 4486626 ~ 4489118 (+)
LOC110533195 LOC106591134 other downstream 698161 4489324 ~ 4500670 (+)
radil LOC106592570 other downstream 837681 4631686 ~ 4726137 (+)
G1414431 NA non-coding upstream 175581 3587428 ~ 3602917 (+)

Expression


Co-expression Network