XLOC_033141


Basic Information

Item Value
gene id XLOC_033141
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 47979305 ~ 48061659 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065223
GGGGAGTGctggtaacaacaacaacatggggTGCAGGACGAGACGAAAACGGGAACCAGTACCATATCCCTGCAACAGAATTTCAGctGGCTCTTGTGCTCTGGTGGCTCAGGCTTTGGCCAAAACATCTTTACAGAAGGAATATTTAATTGGTCTGGATTCTCTCTTCTTCTCATCATGCTGTCCCAGCCAGCCCTATCATGCTCTCTTTGCATGAGATGTCTCCCCCTTCGGGCTTCATAAATAAACCAGTACTGGAATGG
>TCONS_00064401
GAAAAACTCCCAAAGAACGGAGACgttttgttgttatttgtattttGCTTCTGCTGACCGCCTTCAAAAATCCTCAATAAAGTCTCAACTCCATCGTCGCGGTAAATCCTCTCTGtgtcaagtccgccaacgtacataGTGAGCTTCTGAACAAACTGGTAGCAGCcgaaagctgtccatacagagGGGGAGTGctggtaacaacaacaacatggggTGCAGGACGAGACGAAAACGGGAACCAGTACCATATCCCTGCAACAGAATTTCAGctGGCTCTTGTGCTCTGGTGGCTCAGGCTTTGGCCAAAACATCTTTACAGAAGGAATATTTAATTGGTCTGGATTCTCTCTTCTTCTCATCATGCTGTCCCAGCCAGCCCTATCATGCTCTCTTTGCATGAGATGTCTCCCCCTTCGGGCTTCATAAATAAACCAGTACTGGAATGG
>TCONS_00064756
CGGGTTTCCACCTTTAAGAGCACTAACTAAAGTGTTTTGGTCAATTATACAGCCACCTGGCGAGTTCGTCAGGAAACTGCACTGTCTGAACATTAATTTGAATggtaatcaaacacctgactgaACTCATAGCGGGAAAAACTCCCAAAGAACGGAGACgttttgttgttatttgtattttGCTTCTGCTGACCGCCTTCAAAAATCCTCAATAAAGTCTCAACTCCATCGTCGCGGTAAATCCTCTCTGtgtcaagtccgccaacgtacataGTGAGCTTCTGAACAAACTGGTAGCAGCcgaaagctgtccatacagagGGGGAGTGctggtaacaacaacaacatggggTGCAGGACGAGACGAAAACGGGAACCAGTACCATATCCCTGCAACAGAATTTCAGaaacagacaaacacacagagagcACTGTACCGGCTGAGCAGAAAAACGTTGATGAAAGACAGTCGAGAGGTGAGGCTGTACCATGCAGTGCCCAGCCACCAGTACAGCAGAACCAGAGCTTGAGCTgtaaggcacacacacacatgagcacaTGACTACTGCAGGAGAAAAAGACTGATTGTTCATGTTGAGGGCTGAACACAGGCTTTATACATGTAATACCTGGAGATTGAAACACGTCCCACACGCCAAAGCCTGGTTCAGCAGCAGACTGGGTAGAACCTGAATGGGGAAAAAAAGCGACTCTTTACATGGAGGGATTGTTCAACTCCAAGAGTTGGTCAATAGTTGATAGTAACCACTGTCTTCAATAGTAGGAATAATGATATTTGTTTGATCAGATGTTTGGTGACAAACCTTTTTCCAAACTAAttttatacgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacatgtttttgtgacgcatcaggacacaaatctgtataatgataTGGGTATTACAAGAAGGTGGTGAATTATGAGGATATTGCTGATTACCTCATTTCTCAAGAAGCTTagaaatcacacagaatgagtttagtttgctgtgagggttgggtttaggagtaaggccaaagaaaatacagtttgtacaaaataaaaacaatagaagcATATGTTATGTCCCCACAATTTACAAAAAGCCCTGTGTGTGAATGTTAAGCAGAATAAAAGAAAGGTGaagggtaaaataaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000094064

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065223 False 263 lncRNA 0.48 2 47979305 48051590
TCONS_00064401 False 449 lncRNA 0.47 4 47979305 48061524
TCONS_00064756 True 1194 lncRNA 0.43 4 48046286 48061659

Neighbor

gene id symbol gene type direction distance location
XLOC_033140 RAP1GAP coding downstream 25476 47869397 ~ 47953829 (-)
XLOC_033139 lrig2 coding downstream 138840 47809755 ~ 47840465 (-)
XLOC_033137 magi3b coding downstream 182316 47529881 ~ 47796989 (-)
XLOC_033138 AL929512.1 coding downstream 376590 47602599 ~ 47602715 (-)
XLOC_033136 im:7151449 coding downstream 472954 47484084 ~ 47506351 (-)
XLOC_033142 slc2a1b coding upstream 7036 48068695 ~ 48094342 (-)
XLOC_033143 st7l coding upstream 228466 48290125 ~ 48317562 (-)
XLOC_033144 capza1a coding upstream 260591 48322250 ~ 48347724 (-)
XLOC_033145 CU469362.1 coding upstream 318586 48380245 ~ 48381223 (-)
XLOC_033146 rhoca coding upstream 321038 48382697 ~ 48418021 (-)
XLOC_033135 CABZ01055240.1 non-coding downstream 822889 47156302 ~ 47156416 (-)
XLOC_033123 CU041346.1 non-coding downstream 1669294 46294361 ~ 46310011 (-)
XLOC_033121 BX005101.1 non-coding downstream 1727365 46168017 ~ 46251940 (-)
XLOC_033148 CU137649.1 non-coding upstream 550375 48612034 ~ 48612150 (-)
XLOC_033149 NA non-coding upstream 853209 48914868 ~ 48949515 (-)
XLOC_033152 NA non-coding upstream 1039220 49100879 ~ 49104192 (-)
XLOC_033155 BX569793.1 non-coding upstream 1249249 49310908 ~ 49322532 (-)
XLOC_033122 BX005101.2 non-coding downstream 1751073 46228117 ~ 46228232 (-)

Expression


Co-expression Network