LOC110487318 (LOC106594474)


Basic Information

Item Value
gene id LOC110487318
gene name LOC106594474
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 3795458 ~ 3803579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948676.1
ggaacgcttctttcATCAGCAGCAACAGTTAGTCAGACAGGTAGCTTGTTAGACAAAATAGACGCACCAATAAAGCTCTTTAGACGCTTTAGTGTATATTAGCCACCGTGTTTTAAACCCACTCATATCGTCTAGTTAGTTATCCAATTACATTTTATCCAATTTAATTTCCTATTTACGGTGTTGTTTTTGTTCAAGCTTGGTCAGCTAGcgggctggttaagttagcattagcctacCTAGCTAGCATCTCCGACGATGagttcactaagctactctccttCTAAAGAAGAgatctgctggacggagaaagagggTCTGTGGCTGAACATTGttgtgaaagaggagaaggaagatgaggatgtcacaatacaaaaacaagtagagggtgaagctgttacagtgaaagaagagaaagacgttacaTTGACAGTAGATgaagacgcgttcagagtgaaagaggaggaggatgttacagtaaaagaagaggaagagaaagaggaggctgCAGTTTTTgatgtgaaagaggaggagggagagatgactgtcacatcgaaaaaggaggaggaagaagaggaggaaactggatatctgggcccggtttcccaaaggCAACTTAAAGCGTCCAATGGTTCTAACGGTGAACTTAGCCGTAAAATGGTTTTGAGAAACCGGTCCCTGACtaacactaGCATCTTGCAGACTCCCGTCCAGAGCGACCCACAGGAGCAACCAGGGTCAAGCGCCCCGCCCAAGGAAACGTTGACAGATCTCTCACCAAGCTCCTGTTGGCCACCGGCCCAAGCTCTCAACCGCCAGGTCACAAACCACCCAAGACGGATGGATCCCAGAGAGCCCCTCGCccctcagggtccttagcttagtgatgagctttgagggtactatggtgttgaacgctgagctgta
>XM_036948677.1
ggaacgcttctttcATCAGCAGCAACAGTTAGTCAGACAGGTAGCTTGTTAGACAAAATAGACGCACCAATAAAGCTCTTTAGACGCTTTAGTGTATATTAGCCACCGTGTTTTAAACCCACTCATATCGTCTAGTTAGTTATCCAATTACATTTTATCCAATTTAATTTCCTATTTACGGTGTTGTTTTTGTTCAAGCTTGGTCAGCTAGcgggctggttaagttagcattagcctacCTAGCTAGCATCTCCGACGATGagttcactaagctactctccttCTAAAGAAGAgatctgctggacggagaaagagggTCTGTGGCTGAACATTGttgtgaaagaggagaaggaagatgaggatgtcacaatacaaaaacaagtagagggtgaagctgttacagtgaaagaagagaaagacgttacaTTGACAGTAGATgaagacgcgttcagagtgaaagaggaggaggatgttacagtaaaagaagaggaagagaaagaggaggctgCAGTTTTTgatgtgaaagaggaggagggagagatgactgtcacatcgaaaaaggaggaggaagaagaggaggaaactggatatctgggcccggtttcccaaaggCAACTTAAAGCGTCCAATGGTTCTAACGGTGAACTTAGCCGTAAAATGGTTTTGAGAAACCGGTCCCTGACtaacactagtgggaaagggcagtgtggagtgcaatagagattgcatcatctgtggatctgttggtgcggtatgcaaattggagtgggttaaATAAGTTTGTGCACAACATCATGTGCATCATTTTTTTAGTTAAAATAAACAGTGGATTactgctgttgtgggcctt
>XM_036948675.1
ggaacgcttctttcATCAGCAGCAACAGTTAGTCAGACAGGTAGCTTGTTAGACAAAATAGACGCACCAATAAAGCTCTTTAGACGCTTTAGTGTATATTAGCCACCGTGTTTTAAACCCACTCATATCGTCTAGTTAGTTATCCAATTACATTTTATCCAATTTAATTTCCTATTTACGGTGTTGTTTTTGTTCAAGCTTGGTCAGCTAGcgggctggttaagttagcattagcctacCTAGCTAGCATCTCCGACGATGagttcactaagctactctccttCTAAAGAAGAgatctgctggacggagaaagagggTCTGTGGCTGAACATTGttgtgaaagaggagaaggaagatgaggatgtcacaatacaaaaacaagtagagggtgaagctgttacagtgaaagaagagaaagacgttacaTTGACAGTAGATgaagacgcgttcagagtgaaagaggaggaggatgttacagtaaaagaagaggaagagaaagaggaggctgCAGTTTTTgatgtgaaagaggaggagggagagatgactgtcacatcgaaaaaggaggaggaagaagaggaggaaactggatatctgggcccggtttcccaaaggCAACTTAAAGCGTCCAATGGTTCTAACGGTGAACTTAGCCGTAAAATGGTTTTGAGAAACCGGTCCCTGACtaacactagagagagacgtgactattgtggatcctctggggagcctcaacaacatcatgatgctgacgaggcagagaagagtctctccacttcaaaacacctcaagaaacaccagcagagacccacagggaagaaatctcattgctgctctgactgtgggaagagattccCCTCTTCAGCTGACCTTAAAAGACATCTGAGAAtccacacgggagagaaacctaatagctgtgatcaatgtgggaagagttttagtgTTACAAGCAGCCTGAAAGCacaccagaaaacacacacaggagagaaaccttatagctgtgatcaatgtgggaagagatttgttACATCTAGCAGTctgactatacaccagagaatacacactggtgagaaaccttatagctgtgatcgatgtggaaagagttttaatgTTCCAAGCAGCCTGAAAacacatcagagaacacacacaggagatagaCCTTATAGCTgtagtcaatgtgggaagagttttacttcaTCTAGCCAGCTGACTATTCACgagagcacacacacaggagagaaaccttatagctgtagtCAATGTGAGAAGAGGTTTACTCACTCAAGCAACCTGATGGTACATttgagaacacacactggagagaaaccttatagctgtgatcaatgtgcgAAGAGTTTTGTTACATCTAGCTGTCTGACTatgcaccagagaacacacacaggagagaaaccttttagctgtgatcaatgtgggaagagtttcactcAGGCAAATATCCTGATTGCACAccggagaacacacacaggagagaaacctcatagctgtgatcaatgtgggaagagttactCTGGTAAAAGATCTCTGATAAAACATCAGAAAGTACATACATGAAGGActtgtttcatgatatcaatgaaataatgtcacaatgtagaatgttttaacattgtagtaggagtattttaatgaggtcacaatgtagaatgatttaacattgtagtagaagtattttaatgatgtcacaatgtagaatgttttaacattatagtaggagtattttaatgatgtcataaTGTAGAACCCTAAACGTTTGCCccctgttctattgatttcagcATGATATGGATATGAGCTTCATCAGGGGAAAAATTCAGGGTCTGAAATGAAAGAGTACTATTTATATGATTAACATCGTGTTGTGTTAGACTTACCTCGTCGGggacccacttgaatcaaaatgcaacacttcaaaatgtagctagctgttttCTACAAATTGTACTCTAACCAAtgatgtacacattattcccagattccttgtggtttttgagctgttagttttaacaggaagtgcaacctcatctccttctctcggCACAATTGATTTCAACGTGATATTTATATGAGTGATGACAAATAAGTGTTGTGTTCCTTTGCTTAGCAACCCCTAAATTTAAATGCATCactccaaaatgtagctgactgtcttctgcaggttgtcctctaaccagtgaggtaaaatatatctcccatttccatgtgtttttttagttgtgttagCATCAATAGAATGTTAGCCTGATTTCCACCCTAGATatatcagtgatttattgccTCTTGTTGTTTCTGGAAATTGCTTATTGATTCGGACAGGTTaaaactgtgttttgacattggggCTATCCCACCTAGCAACACCAAGGAAAGACTATTCTGACATCCAATCTAAATTCATGACATTTATTTTGAAAGTACGTATTTTTGCAGGTTGTTGTTTCAACGTACTGGCAGCATGGAGgcttttatatataaaaaaaccgTAAATTAACAGTTTTATTAACAATCTGACATCACTCCAGTTTTATTAACAATCTGACATCACTCCAGTTTTATTAACAATCTGACATCACTCCATTTTTATTAACAATCTGACATCACTCCAGTT

Function

NR:

description
zinc finger protein 664-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948676.1 False 927 mRNA 0.47 2 3795458 3801414
XM_036948677.1 False 850 mRNA 0.43 2 3795458 3801615
XM_036948675.1 True 2623 mRNA 0.40 2 3795458 3803579

Neighbor

gene id symbol gene type direction distance location
LOC118940210 NA coding upstream 1453 3778498 ~ 3794005 (+)
LOC110487321 LOC106593224 coding upstream 17530 3770658 ~ 3777928 (+)
LOC110487330 LOC106591998 coding upstream 26515 3755811 ~ 3768943 (+)
LOC118940209 LOC106607538 coding upstream 44526 3733169 ~ 3750932 (+)
LOC110513872 LOC106593751 coding upstream 66856 3721454 ~ 3728602 (+)
LOC118936460 LOC106592292 coding downstream 3552 3807131 ~ 3814967 (+)
LOC110516207 LOC106592850 coding downstream 22378 3825957 ~ 3829616 (+)
LOC110487310 LOC106594479 coding downstream 34205 3837784 ~ 3888090 (+)
LOC110487309 LOC106594479 coding downstream 89881 3893460 ~ 3914294 (+)
LOC118940214 NA coding downstream 155285 3958864 ~ 3959209 (+)
G1414475 NA non-coding upstream 101778 3685300 ~ 3693680 (+)
G1414461 NA non-coding upstream 145504 3648477 ~ 3649954 (+)
G1414459 NA non-coding upstream 149039 3645725 ~ 3646419 (+)
G1414440 NA non-coding upstream 188628 3605120 ~ 3606830 (+)
G1414212 NA non-coding downstream 2506 3806085 ~ 3851350 (+)
G1414547 NA non-coding downstream 39517 3843096 ~ 3844552 (+)
G1414167 NA non-coding downstream 84896 3888475 ~ 3889703 (+)
G1414207 NA non-coding downstream 85520 3889099 ~ 3890121 (+)
LOC118940205 LOC106585892 other upstream 119437 3670220 ~ 3678312 (+)
G1414430 NA other upstream 202543 3587244 ~ 3592915 (+)
LOC110506850 LOC106593733 other upstream 269472 3519620 ~ 3526117 (+)
LOC118940198 LOC106593831 other upstream 437764 3355122 ~ 3359173 (+)
LOC110513329 LOC106595349 other upstream 507500 3279105 ~ 3288531 (+)
G1414190 NA other downstream 87184 3890763 ~ 3893220 (+)
LOC118940211 NA other downstream 312083 4115570 ~ 4119613 (+)
LOC118940222 NA other downstream 683047 4486626 ~ 4489118 (+)
LOC110533195 LOC106591134 other downstream 688587 4489324 ~ 4500670 (+)
radil LOC106592570 other downstream 828107 4631686 ~ 4726137 (+)

Expression


Co-expression Network