LOC118936460 (LOC106592292)


Basic Information

Item Value
gene id LOC118936460
gene name LOC106592292
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 3807131 ~ 3814967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948673.1
GGCGATGCTGCTgatgtgacgtataatctagtggacggaacgcttctttcaacagcaacaacagttagtcagacacctcggtagcttgctagacaaaaTAGACGAACCAATAAAGATCTTTAGAGGCTTTAGTGTTTATTAGCCACTAGGTTTTAAACACACTTCTGTCGTCTTGTTAGTTATCCCATTTACGGCGTTGTTATTATTGGTCTTCTAGctggctggttaagttagcattagcatagctagctaacatctccgACAATGAGTTCACTAAACTACTCTCCTgataaagaagaggaggtctgctggacggaggaAGAGGGTCTcatgaaagaggaagaggaggcagttacaatacaaaaacaagtagagggtgaggctgttaccgtgaaagaagaagagaaagacgtttcagtgaaagaagaggaagactcgttcagagtgaaagaggaggaggatgttacagtaaaagaagaggaggaagataaagaggaggagatgactgTCACGTcgaaaaaggaggaggaagaagatgaggaaactgaatatctgggcccggtttcccaaaggCATTTTAAGGCATCcaatggttctaacgatgaaGTTAGCAGTAAGATGGTTTTGAGAAACCGTTCCTCgattaacactagagagagacgtgacAATCGTGGATCcactggggagcctcaacaacctcaCGAAGCTGACGAGGCAGACAAGAATCTCTCCACATCAGAACATCTCAAGCGGAAACCCACAGGGAGGAAATCTCTCCACTGCTCTGACCGTGGGAAGAGTTACTCAATATCAGGTTCACTGAAAGTGCACCAGAGATTTCACACAGAAGAGACatctcactgctgctctgactgttgGAAGAGATTCACCTCTTCAGCAGAGCTCAAAAGACATCAGAGAATCCATACAGGAGAGAAACGtaatagctgtgatcaatgtgggaagagttttaatgCTCCAAGCAGCCTGAAaacacaccagagaatacacacaggaaagaaaccttatagctgctctgactgtgggaagaccTTTTCAAAACTATATACATTACaatcacaccagagaattcacactggagagaaaccccatagctgtgatcaatgtgggatgAGTTTTACAACATCTAGTCATCTGACtattcaccagagaacacacacaggagagaaaccttatagctgtgatcaatgtgggaagacaTTTTCCAAATTATATACATTACaatcacaccagagaattcacacaggagagaaacctcatagctgtgatcaatgtgggatgagttttactacatctagcaATCTGACtattcaccagagaacacacacaggagagaaacctcatggctgtaatcaatgtgggaagagttttgttacaTCCAGCAATCTGACtattcaccagagaacacacacaggagagaaaccttatagctgtaatcaatgtgggaagagttttgttacaTCCAGCAATCTGACtattcaccagagaacacacacaggagagaaaccatatagctgtaatcaatgtggaaagtgttttgcTCATGCAGGCAACCTGGTAGCACACCtgagaatacacactggagagaaaccttatagctgtgatcaatgtgggaagagttttacttcaTCTAGCCATCTGActacacaccagagaacacacaggagagaaacctcataGCTGTCATCAATGTTGgaagagatactctgataaaatATCTGTGAtttaaacatcagaaaatacatttaTGAAGGACTTGTTTCATGAAATCAGTgaaataatgtcacaatgtagaatgttttaacattgtagtaggagtgttctaatgatgtcacaatgtagaatgttttaacattgtagtaggagtgttctaatgatgtcacaat

Function

NR:

description
zinc finger protein OZF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948673.1 True 1907 mRNA 0.42 2 3807131 3814967

Neighbor

gene id symbol gene type direction distance location
LOC110487318 LOC106594474 coding upstream 3552 3795458 ~ 3803579 (+)
LOC118940210 NA coding upstream 13126 3778498 ~ 3794005 (+)
LOC110487321 LOC106593224 coding upstream 29203 3770658 ~ 3777928 (+)
LOC110487330 LOC106591998 coding upstream 38188 3755811 ~ 3768943 (+)
LOC118940209 LOC106607538 coding upstream 56199 3733169 ~ 3750932 (+)
LOC110516207 LOC106592850 coding downstream 10990 3825957 ~ 3829616 (+)
LOC110487310 LOC106594479 coding downstream 22817 3837784 ~ 3888090 (+)
LOC110487309 LOC106594479 coding downstream 78493 3893460 ~ 3914294 (+)
LOC118940214 NA coding downstream 143897 3958864 ~ 3959209 (+)
LOC118940213 NA coding downstream 145016 3959983 ~ 3960348 (+)
G1414519 NA non-coding upstream 6495 3797348 ~ 3800636 (+)
G1414520 NA non-coding upstream 7012 3799075 ~ 3800119 (+)
G1414475 NA non-coding upstream 113451 3685300 ~ 3693680 (+)
G1414461 NA non-coding upstream 157177 3648477 ~ 3649954 (+)
G1414547 NA non-coding downstream 28129 3843096 ~ 3844552 (+)
G1414167 NA non-coding downstream 73508 3888475 ~ 3889703 (+)
G1414207 NA non-coding downstream 74132 3889099 ~ 3890121 (+)
G1414562 LOC106593750 non-coding downstream 106307 3921274 ~ 3921664 (+)
LOC118940205 LOC106585892 other upstream 131110 3670220 ~ 3678312 (+)
G1414430 NA other upstream 214216 3587244 ~ 3592915 (+)
LOC110506850 LOC106593733 other upstream 281145 3519620 ~ 3526117 (+)
LOC118940198 LOC106593831 other upstream 449437 3355122 ~ 3359173 (+)
LOC110513329 LOC106595349 other upstream 519173 3279105 ~ 3288531 (+)
G1414190 NA other downstream 75796 3890763 ~ 3893220 (+)
LOC118940211 NA other downstream 300695 4115570 ~ 4119613 (+)
LOC118940222 NA other downstream 671659 4486626 ~ 4489118 (+)
LOC110533195 LOC106591134 other downstream 677199 4489324 ~ 4500670 (+)
radil LOC106592570 other downstream 816719 4631686 ~ 4726137 (+)

Expression


Co-expression Network